Wall clock time and date at job start Tue Mar 31 2020 14:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47159 * 110.99753 * 2 1 4 4 C 1.52892 * 108.67596 * 165.41709 * 3 2 1 5 5 C 1.50710 * 109.96653 * 50.19466 * 4 3 2 6 6 C 1.37783 * 121.69188 * 343.26144 * 5 4 3 7 7 C 1.38732 * 119.76783 * 180.24951 * 6 5 4 8 8 C 1.38084 * 120.49182 * 359.84598 * 7 6 5 9 9 C 1.38126 * 119.92861 * 0.02562 * 8 7 6 10 10 C 1.38571 * 119.77111 * 0.09573 * 9 8 7 11 11 O 1.35906 * 119.88836 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99614 * 5.56341 * 11 10 9 13 13 H 1.09004 * 109.47295 * 39.39751 * 12 11 10 14 14 C 1.50697 * 109.47447 * 279.39382 * 12 11 10 15 15 H 1.07998 * 119.99911 * 125.49026 * 14 12 11 16 16 C 1.37874 * 119.99930 * 305.49166 * 14 12 11 17 17 N 1.31516 * 120.00242 * 9.48235 * 16 14 12 18 18 Si 1.86798 * 120.00264 * 189.48085 * 16 14 12 19 19 H 1.48508 * 109.46702 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47379 * 120.00016 * 18 16 14 21 21 H 1.48494 * 109.47527 * 240.00374 * 18 16 14 22 22 C 1.50700 * 109.46617 * 159.39228 * 12 11 10 23 23 C 1.38233 * 120.00070 * 31.02595 * 22 12 11 24 24 C 1.38243 * 119.99864 * 179.80595 * 23 22 12 25 25 C 1.38240 * 119.99829 * 0.39812 * 24 23 22 26 26 C 1.38230 * 120.00151 * 359.85462 * 25 24 23 27 27 C 1.38235 * 119.99801 * 211.29218 * 22 12 11 28 28 C 1.46533 * 111.13180 * 236.86232 * 2 1 3 29 29 H 1.09001 * 109.47467 * 60.00148 * 1 2 3 30 30 H 1.08996 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47765 * 299.99895 * 1 2 3 32 32 H 1.09001 * 109.63309 * 45.61361 * 3 2 1 33 33 H 1.09006 * 109.63573 * 285.22489 * 3 2 1 34 34 H 1.08999 * 109.39288 * 170.34546 * 4 3 2 35 35 H 1.09002 * 109.39120 * 290.14937 * 4 3 2 36 36 H 1.08003 * 119.75398 * 179.87034 * 7 6 5 37 37 H 1.07998 * 120.03446 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.11634 * 180.02562 * 9 8 7 39 39 H 0.96998 * 120.00299 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.00373 * 359.97438 * 23 22 12 41 41 H 1.08000 * 120.00069 * 180.23159 * 24 23 22 42 42 H 1.07999 * 119.99803 * 179.83410 * 25 24 23 43 43 H 1.08001 * 120.00290 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00478 * 359.97438 * 27 22 12 45 45 H 1.08999 * 109.12385 * 55.50423 * 28 2 1 46 46 H 1.09001 * 109.17329 * 296.10301 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3739 0.0000 4 6 3.4804 1.3287 0.3647 5 6 4.1903 0.3125 -0.4926 6 6 3.5000 -0.6539 -1.1912 7 6 4.1944 -1.5729 -1.9643 8 6 5.5722 -1.5245 -2.0417 9 6 6.2679 -0.5557 -1.3451 10 6 5.5785 0.3627 -0.5696 11 8 6.2607 1.3167 0.1172 12 6 7.6708 1.3903 -0.1020 13 1 7.8834 1.2256 -1.1584 14 6 8.3629 0.3339 0.7203 15 1 9.0269 -0.3722 0.2439 16 6 8.1484 0.2689 2.0807 17 7 7.2052 1.0000 2.6334 18 14 9.1974 -0.8576 3.1389 19 1 10.1813 -1.5670 2.2820 20 1 9.9183 -0.0514 4.1564 21 1 8.3270 -1.8498 3.8194 22 6 8.1719 2.7520 0.3049 23 6 7.5485 3.4404 1.3287 24 6 8.0107 4.6879 1.7046 25 6 9.0913 5.2504 1.0512 26 6 9.7114 4.5642 0.0239 27 6 9.2517 3.3151 -0.3494 28 6 1.9972 -0.7472 -1.1445 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.4571 1.9731 0.7337 33 1 1.8758 1.8125 -0.9906 34 1 3.9230 2.3114 0.2024 35 1 3.5870 1.0525 1.4137 36 1 3.6533 -2.3317 -2.5102 37 1 6.1054 -2.2439 -2.6455 38 1 7.3456 -0.5148 -1.4037 39 1 7.0540 0.9540 3.5904 40 1 6.7020 3.0026 1.8368 41 1 7.5259 5.2242 2.5070 42 1 9.4507 6.2261 1.3431 43 1 10.5554 5.0038 -0.4869 44 1 9.7364 2.7789 -1.1519 45 1 1.5820 -0.3335 -2.0635 46 1 1.7038 -1.7931 -1.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234422725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:22 Heat of formation + Delta-G solvation = 22.250618 kcal Electronic energy + Delta-G solvation = -27657.279885 eV Core-core repulsion = 24090.866414 eV Total energy + Delta-G solvation = -3566.413471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79461 -38.50978 -37.45257 -35.88005 -33.10078 -32.17350 -30.88781 -30.48980 -29.86363 -28.13443 -27.06499 -26.35435 -23.50489 -23.34784 -22.44173 -21.69069 -20.95922 -20.22600 -18.88192 -17.31013 -16.20111 -16.13312 -15.46070 -15.26928 -15.15707 -14.69334 -14.57830 -14.29352 -13.81343 -13.74034 -13.58200 -13.15693 -12.99371 -12.70082 -12.45174 -12.42685 -12.18743 -12.08714 -11.73364 -11.67851 -11.39407 -11.27258 -11.15412 -11.02966 -10.79328 -10.53953 -10.46167 -10.37407 -10.12945 -10.00383 -9.41403 -9.26683 -8.67712 -8.27090 -7.97878 -7.88002 -7.64974 -7.00535 -6.15825 -4.35096 2.05593 2.28363 2.31358 2.40786 3.21598 3.30612 3.32887 4.07207 4.28470 4.45600 4.54673 4.82644 5.06320 5.13419 5.16052 5.35764 5.45778 5.57741 5.63241 5.67984 5.68713 5.71846 5.77162 5.78284 5.81127 5.85431 5.91121 6.15292 6.22073 6.26234 6.33346 6.42341 6.45782 6.52525 6.64454 6.67501 6.87630 6.91111 7.04009 7.08782 7.16807 7.25443 7.28469 7.35327 7.35738 7.50545 7.65318 7.71184 7.83178 7.88221 8.04883 8.51712 8.92020 9.37944 10.80889 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.004564 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.346503 B = 6132.874457 C = 6842.776360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.056 4.056 5 C -0.120 4.120 6 C -0.056 4.056 7 C -0.184 4.184 8 C -0.089 4.089 9 C -0.205 4.205 10 C 0.181 3.819 11 O -0.281 6.281 12 C 0.241 3.759 13 H 0.031 0.969 14 C -0.554 4.554 15 H 0.066 0.934 16 C 0.089 3.911 17 N -0.835 5.835 18 Si 0.888 3.112 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.034 4.034 23 C -0.069 4.069 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.127 4.127 28 C 0.103 3.897 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.263 0.737 40 H 0.152 0.848 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.039 0.961 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 1.640 -5.935 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.073 4.073 4 C -0.093 4.093 5 C -0.121 4.121 6 C -0.056 4.056 7 C -0.203 4.203 8 C -0.107 4.107 9 C -0.224 4.224 10 C 0.132 3.868 11 O -0.192 6.192 12 C 0.187 3.813 13 H 0.049 0.951 14 C -0.590 4.590 15 H 0.084 0.916 16 C -0.120 4.120 17 N -0.469 5.469 18 Si 0.715 3.285 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.034 4.034 23 C -0.088 4.088 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.157 4.157 27 C -0.145 4.145 28 C -0.024 4.024 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.170 0.830 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.057 0.943 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.638 1.623 -5.170 9.365 hybrid contribution 0.753 -0.511 -0.012 0.910 sum -6.885 1.113 -5.182 8.689 Atomic orbital electron populations 1.22365 0.87643 1.01818 1.00450 1.62155 1.07067 1.14645 1.42382 1.22207 0.96757 0.88586 0.99728 1.20185 0.91578 0.97846 0.99732 1.18742 0.90748 0.99915 1.02673 1.19086 0.93707 0.95300 0.97523 1.20549 0.94260 1.01281 1.04227 1.20712 0.93752 0.97658 0.98556 1.21354 1.00925 0.98105 1.01987 1.18904 0.90527 0.88791 0.88608 1.86197 1.23473 1.48808 1.60757 1.18926 0.76988 0.90969 0.94450 0.95092 1.21307 1.29543 1.15124 0.93061 0.91564 1.24925 0.94072 0.95098 0.97872 1.69956 1.27696 1.37740 1.11485 0.86598 0.80649 0.80696 0.80549 1.19574 1.20682 1.20762 1.19926 0.94724 0.93645 0.95141 1.21565 1.00649 0.91835 0.94703 1.21151 0.97729 0.96876 1.00212 1.20857 0.97954 0.99545 0.98178 1.20782 1.00332 0.95720 0.98857 1.20769 0.97809 0.95301 1.00657 1.20836 0.91737 0.98718 0.91135 0.95966 0.91568 0.91316 0.90802 0.94877 0.90495 0.90065 0.87469 0.87116 0.84919 0.92657 0.83027 0.87640 0.87870 0.87581 0.87345 0.94264 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.54 60.06 0.57 0.85 16 2 N -0.54 -7.85 4.94 -244.57 -1.21 -9.06 16 3 C 0.05 0.81 5.56 -3.74 -0.02 0.79 16 4 C -0.06 -1.02 5.54 -27.93 -0.15 -1.17 16 5 C -0.12 -2.38 5.78 -104.45 -0.60 -2.99 16 6 C -0.06 -0.98 5.79 -104.64 -0.61 -1.59 16 7 C -0.18 -3.10 9.64 -39.46 -0.38 -3.48 16 8 C -0.09 -1.58 10.04 -39.68 -0.40 -1.97 16 9 C -0.20 -4.23 8.60 -39.50 -0.34 -4.57 16 10 C 0.18 3.98 6.53 -39.13 -0.26 3.72 16 11 O -0.28 -6.66 6.82 -19.44 -0.13 -6.79 16 12 C 0.24 5.67 2.12 -29.04 -0.06 5.61 16 13 H 0.03 0.70 6.53 -51.93 -0.34 0.36 16 14 C -0.55 -14.12 7.49 -34.44 -0.26 -14.37 16 15 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 16 C 0.09 2.30 5.21 -17.82 -0.09 2.21 16 17 N -0.84 -21.77 9.45 55.43 0.52 -21.25 16 18 Si 0.89 20.59 29.55 -169.99 -5.02 15.56 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.03 -0.76 4.84 -104.62 -0.51 -1.27 16 23 C -0.07 -1.55 8.12 -39.58 -0.32 -1.87 16 24 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.15 -2.65 10.05 -39.58 -0.40 -3.04 16 26 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 27 C -0.13 -2.57 9.70 -39.58 -0.38 -2.95 16 28 C 0.10 1.50 5.25 -5.21 -0.03 1.47 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 33 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 2.80 5.57 -52.48 -0.29 2.51 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 40 H 0.15 3.68 5.87 -52.49 -0.31 3.37 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 45 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 46 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -27.45 367.13 -12.13 -39.59 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.80 Total: 7.13 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: -5.03 Total: -30.72 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: -0.68 Total: -30.31 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.13 Total: -6.79 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.45 -12.13 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234422725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.838 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds