Wall clock time and date at job start Tue Mar 31 2020 14:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47159 * 110.99753 * 2 1 4 4 C 1.52892 * 108.67596 * 165.41709 * 3 2 1 5 5 C 1.50710 * 109.96653 * 50.19466 * 4 3 2 6 6 C 1.37783 * 121.69188 * 343.26144 * 5 4 3 7 7 C 1.38732 * 119.76783 * 180.24951 * 6 5 4 8 8 C 1.38084 * 120.49182 * 359.84598 * 7 6 5 9 9 C 1.38126 * 119.92861 * 0.02562 * 8 7 6 10 10 C 1.38571 * 119.77111 * 0.09573 * 9 8 7 11 11 O 1.35906 * 119.88836 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99614 * 5.56341 * 11 10 9 13 13 H 1.09004 * 109.47295 * 39.39751 * 12 11 10 14 14 C 1.50697 * 109.47447 * 279.39382 * 12 11 10 15 15 H 1.07998 * 119.99911 * 125.49026 * 14 12 11 16 16 C 1.37874 * 119.99930 * 305.49166 * 14 12 11 17 17 N 1.31516 * 120.00242 * 9.48235 * 16 14 12 18 18 Si 1.86798 * 120.00264 * 189.48085 * 16 14 12 19 19 H 1.48508 * 109.46702 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47379 * 120.00016 * 18 16 14 21 21 H 1.48494 * 109.47527 * 240.00374 * 18 16 14 22 22 C 1.50700 * 109.46617 * 159.39228 * 12 11 10 23 23 C 1.38233 * 120.00070 * 31.02595 * 22 12 11 24 24 C 1.38243 * 119.99864 * 179.80595 * 23 22 12 25 25 C 1.38240 * 119.99829 * 0.39812 * 24 23 22 26 26 C 1.38230 * 120.00151 * 359.85462 * 25 24 23 27 27 C 1.38235 * 119.99801 * 211.29218 * 22 12 11 28 28 C 1.46533 * 111.13180 * 236.86232 * 2 1 3 29 29 H 1.09001 * 109.47467 * 60.00148 * 1 2 3 30 30 H 1.08996 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47765 * 299.99895 * 1 2 3 32 32 H 1.09001 * 109.63309 * 45.61361 * 3 2 1 33 33 H 1.09006 * 109.63573 * 285.22489 * 3 2 1 34 34 H 1.08999 * 109.39288 * 170.34546 * 4 3 2 35 35 H 1.09002 * 109.39120 * 290.14937 * 4 3 2 36 36 H 1.08003 * 119.75398 * 179.87034 * 7 6 5 37 37 H 1.07998 * 120.03446 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.11634 * 180.02562 * 9 8 7 39 39 H 0.96998 * 120.00299 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.00373 * 359.97438 * 23 22 12 41 41 H 1.08000 * 120.00069 * 180.23159 * 24 23 22 42 42 H 1.07999 * 119.99803 * 179.83410 * 25 24 23 43 43 H 1.08001 * 120.00290 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00478 * 359.97438 * 27 22 12 45 45 H 1.08999 * 109.12385 * 55.50423 * 28 2 1 46 46 H 1.09001 * 109.17329 * 296.10301 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3739 0.0000 4 6 3.4804 1.3287 0.3647 5 6 4.1903 0.3125 -0.4926 6 6 3.5000 -0.6539 -1.1912 7 6 4.1944 -1.5729 -1.9643 8 6 5.5722 -1.5245 -2.0417 9 6 6.2679 -0.5557 -1.3451 10 6 5.5785 0.3627 -0.5696 11 8 6.2607 1.3167 0.1172 12 6 7.6708 1.3903 -0.1020 13 1 7.8834 1.2256 -1.1584 14 6 8.3629 0.3339 0.7203 15 1 9.0269 -0.3722 0.2439 16 6 8.1484 0.2689 2.0807 17 7 7.2052 1.0000 2.6334 18 14 9.1974 -0.8576 3.1389 19 1 10.1813 -1.5670 2.2820 20 1 9.9183 -0.0514 4.1564 21 1 8.3270 -1.8498 3.8194 22 6 8.1719 2.7520 0.3049 23 6 7.5485 3.4404 1.3287 24 6 8.0107 4.6879 1.7046 25 6 9.0913 5.2504 1.0512 26 6 9.7114 4.5642 0.0239 27 6 9.2517 3.3151 -0.3494 28 6 1.9972 -0.7472 -1.1445 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.4571 1.9731 0.7337 33 1 1.8758 1.8125 -0.9906 34 1 3.9230 2.3114 0.2024 35 1 3.5870 1.0525 1.4137 36 1 3.6533 -2.3317 -2.5102 37 1 6.1054 -2.2439 -2.6455 38 1 7.3456 -0.5148 -1.4037 39 1 7.0540 0.9540 3.5904 40 1 6.7020 3.0026 1.8368 41 1 7.5259 5.2242 2.5070 42 1 9.4507 6.2261 1.3431 43 1 10.5554 5.0038 -0.4869 44 1 9.7364 2.7789 -1.1519 45 1 1.5820 -0.3335 -2.0635 46 1 1.7038 -1.7931 -1.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234422725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:21 Heat of formation + Delta-G solvation = 9.522830 kcal Electronic energy + Delta-G solvation = -27657.831803 eV Core-core repulsion = 24090.866414 eV Total energy + Delta-G solvation = -3566.965390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25392 -40.03466 -38.87629 -37.30986 -34.89671 -33.60455 -32.45301 -31.93129 -31.41176 -29.54370 -28.78875 -27.54752 -25.16578 -24.73631 -23.71138 -23.24479 -22.45900 -21.78917 -20.27071 -19.03610 -17.83826 -17.67070 -16.92405 -16.80406 -16.49502 -16.27242 -15.89297 -15.64507 -15.44401 -15.28343 -15.04248 -14.59862 -14.32686 -14.13157 -13.96132 -13.86388 -13.52348 -13.44145 -13.35966 -12.96948 -12.89883 -12.86918 -12.73890 -12.46174 -12.35592 -12.17595 -12.05050 -11.74683 -11.72073 -11.49943 -11.09436 -10.97496 -10.62353 -9.53914 -9.47390 -9.27853 -9.19402 -8.60442 -8.07964 -6.33977 0.57551 0.72188 0.81535 0.85402 1.33578 1.37401 1.45492 2.35877 2.82282 2.97726 3.07230 3.22307 3.24432 3.83543 3.93963 4.19044 4.25349 4.29063 4.32275 4.33936 4.45206 4.46189 4.50744 4.54183 4.55588 4.66955 4.69772 4.75610 4.80865 4.89896 4.95132 4.96384 5.01251 5.06035 5.08569 5.16944 5.35494 5.43026 5.53142 5.62290 5.69889 5.74039 5.78488 5.83915 5.96412 5.99832 6.07484 6.09243 6.22503 6.31156 6.42756 6.59800 7.16472 7.42413 8.84817 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.004564 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.346503 B = 6132.874457 C = 6842.776360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.065 3.935 4 C -0.050 4.050 5 C -0.142 4.142 6 C -0.058 4.058 7 C -0.175 4.175 8 C -0.089 4.089 9 C -0.227 4.227 10 C 0.141 3.859 11 O -0.297 6.297 12 C 0.244 3.756 13 H 0.025 0.975 14 C -0.565 4.565 15 H 0.055 0.945 16 C 0.050 3.950 17 N -0.851 5.851 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.285 1.285 22 C -0.062 4.062 23 C -0.091 4.091 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.140 4.140 28 C 0.105 3.895 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.260 0.740 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.118 0.882 45 H 0.059 0.941 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 1.715 -6.972 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.063 4.063 4 C -0.087 4.087 5 C -0.143 4.143 6 C -0.058 4.058 7 C -0.194 4.194 8 C -0.107 4.107 9 C -0.246 4.246 10 C 0.093 3.907 11 O -0.210 6.210 12 C 0.189 3.811 13 H 0.042 0.958 14 C -0.602 4.602 15 H 0.073 0.927 16 C -0.156 4.156 17 N -0.485 5.485 18 Si 0.763 3.237 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.211 1.211 22 C -0.062 4.062 23 C -0.110 4.110 24 C -0.166 4.166 25 C -0.157 4.157 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.022 4.022 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.136 0.864 45 H 0.077 0.923 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.556 1.694 -6.217 10.711 hybrid contribution 0.989 -0.535 0.223 1.146 sum -7.568 1.160 -5.993 9.723 Atomic orbital electron populations 1.22431 0.85078 1.03106 1.01454 1.62116 1.09413 1.14108 1.42808 1.22074 0.94113 0.89565 1.00509 1.20061 0.94355 0.96576 0.97733 1.19087 0.90210 1.01262 1.03698 1.19598 0.95910 0.94128 0.96207 1.21013 0.93907 1.01279 1.03191 1.21065 0.94654 0.97048 0.97932 1.21375 1.00362 0.99437 1.03380 1.19384 0.91736 0.89547 0.89997 1.86153 1.23215 1.49754 1.61832 1.18830 0.77101 0.91484 0.93667 0.95755 1.21439 1.29486 1.15724 0.93536 0.92676 1.25484 0.95005 0.96346 0.98773 1.70108 1.28513 1.38726 1.11138 0.85842 0.79388 0.79256 0.79212 1.19324 1.20439 1.21065 1.20015 0.96136 0.93745 0.96314 1.21374 1.00664 0.93476 0.95451 1.21402 0.98446 0.95881 1.00844 1.21299 0.96541 1.00822 0.97045 1.21227 1.00772 0.94518 0.98472 1.21023 0.97281 0.96561 1.00979 1.20915 0.89199 1.00061 0.92064 0.94614 0.90157 0.90631 0.89164 0.94107 0.92185 0.93080 0.83456 0.84226 0.86620 0.93097 0.85978 0.85718 0.83869 0.83728 0.86351 0.92273 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.54 127.69 1.22 1.72 16 2 N -0.56 -15.22 4.94 -927.69 -4.58 -19.80 16 3 C 0.07 1.88 5.56 86.22 0.48 2.36 16 4 C -0.05 -1.91 5.54 29.82 0.17 -1.74 16 5 C -0.14 -5.85 5.78 -19.75 -0.11 -5.96 16 6 C -0.06 -1.99 5.79 -19.87 -0.12 -2.10 16 7 C -0.18 -5.52 9.64 22.35 0.22 -5.31 16 8 C -0.09 -3.12 10.04 22.21 0.22 -2.90 16 9 C -0.23 -9.83 8.60 22.32 0.19 -9.64 16 10 C 0.14 6.62 6.53 22.56 0.15 6.77 16 11 O -0.30 -15.25 6.82 -92.49 -0.63 -15.88 16 12 C 0.24 12.29 2.12 29.10 0.06 12.36 16 13 H 0.02 1.21 6.53 -2.39 -0.02 1.19 16 14 C -0.57 -30.47 7.49 25.60 0.19 -30.28 16 15 H 0.06 2.98 7.83 -2.91 -0.02 2.96 16 16 C 0.05 2.72 5.21 84.65 0.44 3.17 16 17 N -0.85 -46.95 9.45 21.45 0.20 -46.74 16 18 Si 0.94 43.66 29.55 68.60 2.03 45.68 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 C -0.06 -2.92 4.84 -19.87 -0.10 -3.02 16 23 C -0.09 -4.28 8.12 22.27 0.18 -4.10 16 24 C -0.15 -5.75 10.05 22.27 0.22 -5.53 16 25 C -0.14 -4.67 10.05 22.27 0.22 -4.44 16 26 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 27 C -0.14 -5.71 9.70 22.27 0.22 -5.49 16 28 C 0.10 2.75 5.25 85.61 0.45 3.20 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 32 H 0.09 2.27 8.00 -2.39 -0.02 2.25 16 33 H 0.04 1.11 8.05 -2.38 -0.02 1.09 16 34 H 0.06 2.42 7.85 -2.39 -0.02 2.40 16 35 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.12 5.28 5.57 -2.91 -0.02 5.26 16 39 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.12 6.41 5.87 -2.91 -0.02 6.40 16 41 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 46 H 0.10 2.28 8.13 -2.39 -0.02 2.26 16 Total: -1.00 -63.68 367.13 2.51 -61.17 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.96 Total: 30.77 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 4.53 Total: -55.21 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -4.38 Total: -66.54 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.63 Total: -15.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -63.68 2.51 -61.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234422725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.697 kcal (2) G-P(sol) polarization free energy of solvation -63.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds