Wall clock time and date at job start Tue Mar 31 2020 14:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36880 * 126.39785 * 2 1 4 4 C 1.34674 * 106.82015 * 179.73791 * 3 2 1 5 5 N 1.34130 * 108.01710 * 0.23538 * 4 3 2 6 6 C 1.30496 * 109.26014 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.65380 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46824 * 89.97844 * 7 6 5 9 9 H 1.08997 * 109.50266 * 305.08083 * 8 7 6 10 10 C 1.53116 * 109.50229 * 65.19984 * 8 7 6 11 11 C 1.53122 * 109.16010 * 177.59557 * 10 8 7 12 12 C 1.53040 * 109.27713 * 302.34480 * 11 10 8 13 13 N 1.46845 * 109.52279 * 59.17935 * 12 11 10 14 14 C 1.46904 * 110.99925 * 174.16148 * 13 12 11 15 15 C 1.52994 * 109.47216 * 314.20798 * 14 13 12 16 16 C 1.52998 * 109.47411 * 179.97438 * 15 14 13 17 17 S 1.80995 * 109.47440 * 180.02562 * 16 15 14 18 18 C 1.76202 * 100.00325 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99306 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00271 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00216 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47088 * 89.99842 * 22 20 18 24 24 H 1.48500 * 109.47340 * 210.00370 * 22 20 18 25 25 H 1.48503 * 109.46856 * 330.00261 * 22 20 18 26 26 C 1.46851 * 111.20169 * 298.25750 * 13 12 11 27 27 H 1.09004 * 109.47080 * 90.02327 * 1 2 3 28 28 H 1.09003 * 109.46992 * 210.02011 * 1 2 3 29 29 H 1.08994 * 109.47184 * 330.01958 * 1 2 3 30 30 H 1.08002 * 126.59253 * 0.02562 * 3 2 1 31 31 H 1.07997 * 125.99347 * 180.23004 * 4 3 2 32 32 H 1.08996 * 109.47390 * 209.97829 * 7 6 5 33 33 H 1.09002 * 109.46915 * 329.98538 * 7 6 5 34 34 H 1.09001 * 109.52365 * 297.49810 * 10 8 7 35 35 H 1.08999 * 109.52710 * 57.68971 * 10 8 7 36 36 H 1.08995 * 109.50495 * 182.40449 * 11 10 8 37 37 H 1.08999 * 109.53315 * 62.30426 * 11 10 8 38 38 H 1.09000 * 109.46180 * 299.16463 * 12 11 10 39 39 H 1.09000 * 109.46278 * 179.19741 * 12 11 10 40 40 H 1.08998 * 109.46986 * 74.21233 * 14 13 12 41 41 H 1.09001 * 109.47150 * 194.20932 * 14 13 12 42 42 H 1.08998 * 109.47498 * 300.00121 * 15 14 13 43 43 H 1.09001 * 109.46952 * 60.00013 * 15 14 13 44 44 H 1.08998 * 109.46911 * 300.00508 * 16 15 14 45 45 H 1.09001 * 109.47030 * 60.00088 * 16 15 14 46 46 H 0.96994 * 120.00239 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.45832 * 301.73003 * 26 13 12 48 48 H 1.08990 * 109.45782 * 181.75244 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0059 5 7 3.5096 -0.6903 0.0042 6 6 2.2664 -1.0870 -0.0020 7 6 1.8019 -2.5207 -0.0053 8 6 1.6383 -3.0070 1.4361 9 1 2.5700 -2.8524 1.9803 10 6 0.5124 -2.2228 2.1156 11 6 0.3152 -2.7564 3.5372 12 6 0.0031 -4.2534 3.4762 13 7 1.1101 -4.9591 2.8185 14 6 0.9091 -6.4136 2.8653 15 6 0.4824 -6.8243 4.2760 16 6 0.2724 -8.3390 4.3247 17 16 -0.2331 -8.8247 5.9934 18 6 -0.3991 -10.5644 5.7686 19 1 -0.1998 -11.0056 4.8031 20 6 -0.7848 -11.3680 6.8325 21 7 -1.0272 -10.8304 8.0093 22 14 -0.9601 -13.2124 6.5944 23 1 0.3364 -13.8747 6.8871 24 1 -2.0015 -13.7338 7.5158 25 1 -1.3545 -13.4950 5.1909 26 6 1.2879 -4.4967 1.4360 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5135 30 1 1.9612 2.1345 0.0004 31 1 4.4368 1.2611 0.0110 32 1 0.8455 -2.5916 -0.5234 33 1 2.5388 -3.1402 -0.5163 34 1 0.7776 -1.1663 2.1566 35 1 -0.4107 -2.3459 1.5491 36 1 -0.5136 -2.2309 4.0115 37 1 1.2254 -2.5977 4.1156 38 1 -0.9150 -4.4102 2.9100 39 1 -0.1238 -4.6394 4.4877 40 1 0.1329 -6.6961 2.1542 41 1 1.8402 -6.9176 2.6062 42 1 1.2586 -6.5417 4.9871 43 1 -0.4486 -6.3202 4.5352 44 1 -0.5040 -8.6211 3.6136 45 1 1.2033 -8.8433 4.0654 46 1 -1.2971 -11.3918 8.7527 47 1 0.3637 -4.6524 0.8794 48 1 2.0942 -5.0595 0.9659 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119986267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:07 Heat of formation + Delta-G solvation = 45.456510 kcal Electronic energy + Delta-G solvation = -24581.388677 eV Core-core repulsion = 21183.718191 eV Total energy + Delta-G solvation = -3397.670486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42801 -39.43474 -35.75682 -34.29375 -32.95220 -32.42271 -31.71275 -29.80706 -27.65058 -26.42719 -26.18057 -25.45690 -23.14401 -22.78025 -21.65791 -20.63542 -19.90555 -19.59891 -17.47850 -17.36214 -16.50812 -15.72758 -15.32499 -15.26435 -14.81456 -14.79473 -14.54097 -14.44695 -14.02819 -13.86709 -13.77325 -13.37144 -13.29777 -13.13194 -12.84635 -12.77871 -12.34037 -12.17348 -12.02570 -11.61225 -11.34379 -11.22894 -11.06845 -10.91509 -10.81334 -10.72143 -10.52380 -10.43193 -10.21136 -10.16600 -9.88284 -9.51061 -9.04917 -8.63155 -8.29363 -8.28165 -6.51643 -6.21889 -3.91983 1.73696 2.45876 2.88953 3.22304 3.22636 3.29578 3.54486 3.86069 4.12660 4.23535 4.27555 4.42975 4.55629 4.57322 4.65074 4.69639 4.91459 4.94470 5.06832 5.14051 5.17078 5.18869 5.24511 5.29232 5.36080 5.36648 5.41777 5.47061 5.51091 5.53259 5.66517 5.71428 5.74156 5.86520 5.90958 5.96376 6.00975 6.01446 6.18014 6.21225 6.34228 6.48592 6.60031 6.74642 6.86861 7.10615 7.12518 7.61487 7.86143 8.37636 9.24421 10.86309 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.040544 B = 0.001830 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.435667 B =15295.573245 C =15525.637126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.457 5.457 3 C -0.064 4.064 4 C -0.028 4.028 5 N -0.490 5.490 6 C 0.217 3.783 7 C -0.031 4.031 8 C -0.078 4.078 9 H 0.089 0.911 10 C -0.119 4.119 11 C -0.116 4.116 12 C 0.046 3.954 13 N -0.536 5.536 14 C 0.061 3.939 15 C -0.101 4.101 16 C -0.112 4.112 17 S -0.133 6.133 18 C -0.516 4.516 19 H 0.072 0.928 20 C 0.070 3.930 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.063 3.937 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.267 0.733 47 H 0.032 0.968 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 24.155 -17.578 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.140 5.140 3 C -0.197 4.197 4 C -0.176 4.176 5 N -0.208 5.208 6 C -0.046 4.046 7 C -0.071 4.071 8 C -0.098 4.098 9 H 0.107 0.893 10 C -0.157 4.157 11 C -0.154 4.154 12 C -0.081 4.081 13 N -0.260 5.260 14 C -0.068 4.068 15 C -0.139 4.139 16 C -0.262 4.262 17 S 0.095 5.905 18 C -0.664 4.664 19 H 0.090 0.910 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.066 4.066 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.050 0.950 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.549 24.349 -16.195 29.354 hybrid contribution -1.415 -1.359 -1.683 2.585 sum 1.134 22.990 -17.879 29.146 Atomic orbital electron populations 1.22328 0.76940 1.05478 1.03742 1.45285 1.07439 1.06635 1.54636 1.22679 0.91456 0.92508 1.13063 1.22301 0.96392 0.91250 1.07660 1.70266 1.18522 1.11965 1.20047 1.23201 0.85705 0.90797 1.04873 1.20071 1.01805 0.87079 0.98127 1.21185 1.00236 0.94326 0.94063 0.89282 1.21857 0.97772 0.99250 0.96778 1.21580 1.02250 0.95193 0.96347 1.22250 0.91563 0.93766 1.00549 1.61933 1.43169 1.04982 1.15964 1.22183 1.00451 0.86528 0.97606 1.21439 1.01981 0.94809 0.95687 1.23229 1.02686 0.97067 1.03174 1.84610 1.88636 1.09139 1.08127 1.22691 1.53232 0.91052 0.99409 0.90978 1.25015 0.94744 0.99527 0.94546 1.70022 1.43740 1.35890 1.00896 0.86168 0.78079 0.83081 0.78212 1.20253 1.20773 1.19720 1.22064 1.00260 0.94678 0.89553 0.90643 0.88442 0.89584 0.81071 0.81447 0.90554 0.88412 0.92172 0.92313 0.91605 0.90944 0.95097 0.89293 0.95029 0.90600 0.90688 0.91431 0.92381 0.92046 0.92328 0.94989 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.02 59.84 0.60 0.84 16 2 N -0.46 -3.54 2.79 -121.28 -0.34 -3.88 16 3 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 4 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 5 N -0.49 -5.92 11.25 -10.81 -0.12 -6.04 16 6 C 0.22 2.12 6.40 -155.41 -1.00 1.13 16 7 C -0.03 -0.25 4.88 -27.88 -0.14 -0.38 16 8 C -0.08 -0.70 2.34 -90.54 -0.21 -0.91 16 9 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.12 -0.96 3.62 -26.61 -0.10 -1.05 16 11 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 12 C 0.05 0.52 4.85 -3.83 -0.02 0.51 16 13 N -0.54 -6.46 4.81 -234.67 -1.13 -7.59 16 14 C 0.06 0.82 5.27 -3.83 -0.02 0.80 16 15 C -0.10 -1.64 4.47 -26.74 -0.12 -1.76 16 16 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 17 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 18 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 19 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 20 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.06 0.61 4.71 -3.83 -0.02 0.60 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.10 0.39 4.29 -51.93 -0.22 0.17 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.08 0.46 7.72 -51.93 -0.40 0.06 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.49 6.20 -51.93 -0.32 0.17 16 35 H 0.06 0.40 6.84 -51.93 -0.36 0.05 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 1.12 5.81 -51.93 -0.30 0.81 16 40 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.09 6.21 -51.93 -0.32 0.77 16 44 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 45 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -33.76 384.35 -11.79 -45.55 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.23 Total: -1.89 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.17 Total: -17.38 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.85 Total: -42.87 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.76 -11.79 -45.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119986267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.004 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds