Wall clock time and date at job start Tue Mar 31 2020 14:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36880 * 126.39785 * 2 1 4 4 C 1.34674 * 106.82015 * 179.73791 * 3 2 1 5 5 N 1.34130 * 108.01710 * 0.23538 * 4 3 2 6 6 C 1.30496 * 109.26014 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.65380 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46824 * 89.97844 * 7 6 5 9 9 H 1.08997 * 109.50266 * 305.08083 * 8 7 6 10 10 C 1.53116 * 109.50229 * 65.19984 * 8 7 6 11 11 C 1.53122 * 109.16010 * 177.59557 * 10 8 7 12 12 C 1.53040 * 109.27713 * 302.34480 * 11 10 8 13 13 N 1.46845 * 109.52279 * 59.17935 * 12 11 10 14 14 C 1.46904 * 110.99925 * 174.16148 * 13 12 11 15 15 C 1.52994 * 109.47216 * 314.20798 * 14 13 12 16 16 C 1.52998 * 109.47411 * 179.97438 * 15 14 13 17 17 S 1.80995 * 109.47440 * 180.02562 * 16 15 14 18 18 C 1.76202 * 100.00325 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99306 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00271 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00216 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47088 * 89.99842 * 22 20 18 24 24 H 1.48500 * 109.47340 * 210.00370 * 22 20 18 25 25 H 1.48503 * 109.46856 * 330.00261 * 22 20 18 26 26 C 1.46851 * 111.20169 * 298.25750 * 13 12 11 27 27 H 1.09004 * 109.47080 * 90.02327 * 1 2 3 28 28 H 1.09003 * 109.46992 * 210.02011 * 1 2 3 29 29 H 1.08994 * 109.47184 * 330.01958 * 1 2 3 30 30 H 1.08002 * 126.59253 * 0.02562 * 3 2 1 31 31 H 1.07997 * 125.99347 * 180.23004 * 4 3 2 32 32 H 1.08996 * 109.47390 * 209.97829 * 7 6 5 33 33 H 1.09002 * 109.46915 * 329.98538 * 7 6 5 34 34 H 1.09001 * 109.52365 * 297.49810 * 10 8 7 35 35 H 1.08999 * 109.52710 * 57.68971 * 10 8 7 36 36 H 1.08995 * 109.50495 * 182.40449 * 11 10 8 37 37 H 1.08999 * 109.53315 * 62.30426 * 11 10 8 38 38 H 1.09000 * 109.46180 * 299.16463 * 12 11 10 39 39 H 1.09000 * 109.46278 * 179.19741 * 12 11 10 40 40 H 1.08998 * 109.46986 * 74.21233 * 14 13 12 41 41 H 1.09001 * 109.47150 * 194.20932 * 14 13 12 42 42 H 1.08998 * 109.47498 * 300.00121 * 15 14 13 43 43 H 1.09001 * 109.46952 * 60.00013 * 15 14 13 44 44 H 1.08998 * 109.46911 * 300.00508 * 16 15 14 45 45 H 1.09001 * 109.47030 * 60.00088 * 16 15 14 46 46 H 0.96994 * 120.00239 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.45832 * 301.73003 * 26 13 12 48 48 H 1.08990 * 109.45782 * 181.75244 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0059 5 7 3.5096 -0.6903 0.0042 6 6 2.2664 -1.0870 -0.0020 7 6 1.8019 -2.5207 -0.0053 8 6 1.6383 -3.0070 1.4361 9 1 2.5700 -2.8524 1.9803 10 6 0.5124 -2.2228 2.1156 11 6 0.3152 -2.7564 3.5372 12 6 0.0031 -4.2534 3.4762 13 7 1.1101 -4.9591 2.8185 14 6 0.9091 -6.4136 2.8653 15 6 0.4824 -6.8243 4.2760 16 6 0.2724 -8.3390 4.3247 17 16 -0.2331 -8.8247 5.9934 18 6 -0.3991 -10.5644 5.7686 19 1 -0.1998 -11.0056 4.8031 20 6 -0.7848 -11.3680 6.8325 21 7 -1.0272 -10.8304 8.0093 22 14 -0.9601 -13.2124 6.5944 23 1 0.3364 -13.8747 6.8871 24 1 -2.0015 -13.7338 7.5158 25 1 -1.3545 -13.4950 5.1909 26 6 1.2879 -4.4967 1.4360 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5135 30 1 1.9612 2.1345 0.0004 31 1 4.4368 1.2611 0.0110 32 1 0.8455 -2.5916 -0.5234 33 1 2.5388 -3.1402 -0.5163 34 1 0.7776 -1.1663 2.1566 35 1 -0.4107 -2.3459 1.5491 36 1 -0.5136 -2.2309 4.0115 37 1 1.2254 -2.5977 4.1156 38 1 -0.9150 -4.4102 2.9100 39 1 -0.1238 -4.6394 4.4877 40 1 0.1329 -6.6961 2.1542 41 1 1.8402 -6.9176 2.6062 42 1 1.2586 -6.5417 4.9871 43 1 -0.4486 -6.3202 4.5352 44 1 -0.5040 -8.6211 3.6136 45 1 1.2033 -8.8433 4.0654 46 1 -1.2971 -11.3918 8.7527 47 1 0.3637 -4.6524 0.8794 48 1 2.0942 -5.0595 0.9659 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119986267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:06 Heat of formation + Delta-G solvation = 25.675428 kcal Electronic energy + Delta-G solvation = -24582.246449 eV Core-core repulsion = 21183.718191 eV Total energy + Delta-G solvation = -3398.528258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03880 -40.29075 -36.71294 -34.87012 -34.60908 -33.89075 -32.72671 -30.53923 -28.14747 -27.95714 -27.17447 -26.87903 -24.23984 -23.61835 -22.28492 -21.66119 -20.77902 -20.25334 -19.54668 -17.93197 -17.31157 -16.89646 -16.54232 -16.48588 -16.04596 -15.96545 -15.51280 -15.23549 -15.16149 -14.77681 -14.71489 -14.37082 -14.08917 -13.87794 -13.69818 -13.55675 -13.30411 -13.28367 -13.18662 -12.92383 -12.85012 -12.81384 -12.40212 -12.31220 -12.04094 -11.85043 -11.56387 -11.44160 -11.18923 -11.15090 -11.10201 -10.89432 -10.48484 -10.31076 -9.26281 -9.20750 -8.66568 -8.37360 -6.13624 1.14116 1.31398 1.39395 1.48627 1.74581 1.97186 2.19999 2.28386 2.92081 2.96776 3.32574 3.47422 3.79295 3.83009 3.89383 3.94179 4.02595 4.07262 4.14476 4.29280 4.32679 4.40919 4.43296 4.46752 4.50694 4.52978 4.57821 4.65094 4.67943 4.74372 4.77841 4.80882 4.83534 4.84057 4.96799 5.01174 5.09054 5.19401 5.20675 5.28262 5.30628 5.39643 5.39720 5.47626 5.88726 6.13467 6.18157 6.22195 6.32379 7.04796 7.22016 8.72042 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.040544 B = 0.001830 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.435667 B =15295.573245 C =15525.637126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.455 5.455 3 C -0.053 4.053 4 C -0.062 4.062 5 N -0.536 5.536 6 C 0.201 3.799 7 C -0.025 4.025 8 C -0.068 4.068 9 H 0.059 0.941 10 C -0.111 4.111 11 C -0.113 4.113 12 C 0.046 3.954 13 N -0.549 5.549 14 C 0.072 3.928 15 C -0.088 4.088 16 C -0.087 4.087 17 S -0.198 6.198 18 C -0.538 4.538 19 H 0.073 0.927 20 C 0.014 3.986 21 N -0.907 5.907 22 Si 0.994 3.006 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.263 1.263 26 C 0.064 3.936 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.205 0.795 31 H 0.177 0.823 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.271 0.729 47 H 0.047 0.953 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 24.684 -19.485 31.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.137 5.137 3 C -0.186 4.186 4 C -0.210 4.210 5 N -0.256 5.256 6 C -0.062 4.062 7 C -0.064 4.064 8 C -0.088 4.088 9 H 0.077 0.923 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.082 4.082 13 N -0.274 5.274 14 C -0.057 4.057 15 C -0.126 4.126 16 C -0.237 4.237 17 S 0.030 5.970 18 C -0.686 4.686 19 H 0.091 0.909 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.816 3.184 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.187 1.187 26 C -0.064 4.064 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.222 0.778 31 H 0.194 0.806 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.197 24.895 -18.110 30.808 hybrid contribution -0.971 -1.405 -1.113 2.039 sum 0.226 23.489 -19.223 30.354 Atomic orbital electron populations 1.22602 0.74691 1.06624 1.05113 1.45500 1.08771 1.05964 1.53462 1.23179 0.90798 0.93840 1.10803 1.22657 0.98036 0.90919 1.09363 1.70185 1.20410 1.13442 1.21571 1.23397 0.85637 0.91844 1.05289 1.20044 1.02845 0.86153 0.97355 1.21027 0.99198 0.93989 0.94605 0.92286 1.21807 0.98285 0.98900 0.95814 1.21552 1.01940 0.94180 0.97386 1.22243 0.91670 0.94717 0.99537 1.61912 1.43703 1.04058 1.17694 1.21989 1.00677 0.87739 0.95329 1.21315 1.01793 0.91902 0.97621 1.23155 1.02406 0.99520 0.98593 1.84629 1.89253 1.09096 1.13998 1.23043 1.53676 0.92108 0.99762 0.90912 1.26080 0.93963 1.04994 0.94034 1.70155 1.44410 1.37961 1.01851 0.85009 0.78447 0.76258 0.78652 1.19348 1.19863 1.18672 1.22107 1.01000 0.95077 0.88227 0.89136 0.88064 0.87719 0.77838 0.80594 0.88072 0.88952 0.92083 0.90090 0.90147 0.92752 0.94320 0.91146 0.94127 0.90452 0.91872 0.91316 0.91905 0.91980 0.91973 0.93477 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.26 10.02 127.77 1.28 1.54 16 2 N -0.45 -6.05 2.79 -537.61 -1.50 -7.55 16 3 C -0.05 -0.72 11.58 83.09 0.96 0.24 16 4 C -0.06 -1.21 11.87 83.52 0.99 -0.21 16 5 N -0.54 -13.11 11.25 -188.12 -2.12 -15.22 16 6 C 0.20 3.74 6.40 138.13 0.88 4.62 16 7 C -0.02 -0.35 4.88 29.85 0.15 -0.21 16 8 C -0.07 -1.13 2.34 -10.74 -0.03 -1.16 16 9 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 10 C -0.11 -1.54 3.62 30.67 0.11 -1.43 16 11 C -0.11 -1.99 6.09 30.65 0.19 -1.81 16 12 C 0.05 0.99 4.85 86.33 0.42 1.40 16 13 N -0.55 -12.65 4.81 -896.36 -4.31 -16.96 16 14 C 0.07 1.84 5.27 86.30 0.46 2.30 16 15 C -0.09 -2.83 4.47 30.59 0.14 -2.69 16 16 C -0.09 -3.52 5.67 71.98 0.41 -3.11 16 17 S -0.20 -10.66 21.44 -56.49 -1.21 -11.87 16 18 C -0.54 -31.34 9.50 67.95 0.65 -30.70 16 19 H 0.07 4.08 7.80 -2.91 -0.02 4.05 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 22 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 26 C 0.06 1.13 4.71 86.33 0.41 1.54 16 27 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 28 H 0.10 0.44 4.29 -2.39 -0.01 0.43 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.10 0.92 7.72 -2.39 -0.02 0.90 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 0.87 6.20 -2.39 -0.01 0.86 16 35 H 0.08 0.80 6.84 -2.39 -0.02 0.78 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 1.76 5.81 -2.39 -0.01 1.74 16 40 H 0.04 0.98 8.08 -2.39 -0.02 0.96 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.07 2.21 6.21 -2.39 -0.01 2.20 16 44 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 45 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 48 H 0.08 1.38 8.12 -2.39 -0.02 1.37 16 Total: -1.00 -74.87 384.35 1.57 -73.29 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.92 Total: 15.38 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 7.47 Total: -28.39 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -7.64 Total: -94.57 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.21 Total: -11.87 kcal Total: -74.87 1.57 -73.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119986267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.970 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds