Wall clock time and date at job start Tue Mar 31 2020 13:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38121 * 120.39870 * 2 1 4 4 C 1.39624 * 118.33340 * 180.19683 * 3 2 1 5 5 N 1.38544 * 120.53315 * 179.80146 * 4 3 2 6 6 C 1.46498 * 119.99945 * 354.84355 * 5 4 3 7 7 H 1.08996 * 109.47171 * 37.27631 * 6 5 4 8 8 C 1.53001 * 109.47123 * 157.27877 * 6 5 4 9 9 C 1.50694 * 109.46833 * 294.64986 * 8 6 5 10 10 H 1.07995 * 120.00737 * 4.84644 * 9 8 6 11 11 C 1.37884 * 119.99756 * 184.85389 * 9 8 6 12 12 N 1.31518 * 119.99908 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99900 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47089 * 90.00218 * 13 11 9 15 15 H 1.48503 * 109.47092 * 209.99447 * 13 11 9 16 16 H 1.48496 * 109.47683 * 329.99703 * 13 11 9 17 17 C 1.50704 * 109.46718 * 277.27895 * 6 5 4 18 18 C 1.38236 * 119.99888 * 140.00407 * 17 6 5 19 19 C 1.38237 * 119.99962 * 179.97438 * 18 17 6 20 20 C 1.38233 * 119.99661 * 359.97438 * 19 18 17 21 21 C 1.38225 * 120.00441 * 0.07200 * 20 19 18 22 22 C 1.38228 * 120.00241 * 319.97684 * 17 6 5 23 23 N 1.32992 * 118.93383 * 359.52954 * 4 3 2 24 24 C 1.31753 * 120.69075 * 0.25201 * 23 4 3 25 25 C 1.50694 * 119.08618 * 179.97438 * 24 23 4 26 26 C 1.52999 * 117.50015 * 188.74427 * 25 24 23 27 27 C 1.53004 * 117.49745 * 120.08665 * 25 24 23 28 28 N 1.31796 * 121.82959 * 359.97438 * 24 23 4 29 29 H 1.09005 * 109.46947 * 270.27791 * 1 2 3 30 30 H 1.09000 * 109.47436 * 30.27643 * 1 2 3 31 31 H 1.09001 * 109.47507 * 150.28182 * 1 2 3 32 32 H 1.08002 * 120.83522 * 359.97438 * 3 2 1 33 33 H 0.96994 * 119.99612 * 174.83694 * 5 4 3 34 34 H 1.09004 * 109.46803 * 54.65052 * 8 6 5 35 35 H 1.09001 * 109.46898 * 174.64647 * 8 6 5 36 36 H 0.96993 * 119.99630 * 180.02562 * 12 11 9 37 37 H 1.07999 * 119.99808 * 359.97438 * 18 17 6 38 38 H 1.07997 * 119.99571 * 179.72163 * 19 18 17 39 39 H 1.08002 * 119.99095 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.00531 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.00124 * 359.97438 * 22 17 6 42 42 H 1.09000 * 115.55023 * 334.41961 * 25 24 23 43 43 H 1.09007 * 117.49792 * 0.02562 * 26 25 24 44 44 H 1.09002 * 117.49806 * 145.02145 * 26 25 24 45 45 H 1.09000 * 117.49926 * 214.98152 * 27 25 24 46 46 H 1.08999 * 117.49897 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1410 -0.0042 5 7 4.3476 2.3082 -0.0085 6 6 3.6774 3.6058 -0.1227 7 1 2.7412 3.5816 0.4350 8 6 4.5827 4.6994 0.4476 9 6 4.7629 4.4810 1.9277 10 1 4.3454 3.6036 2.3989 11 6 5.4608 5.4017 2.6804 12 7 5.9696 6.4701 2.1066 13 14 5.6836 5.1313 4.5153 14 1 6.9307 4.3612 4.7544 15 1 5.7739 6.4450 5.2018 16 1 4.5235 4.3730 5.0484 17 6 3.3904 3.8970 -1.5733 18 6 2.1920 4.4822 -1.9368 19 6 1.9290 4.7498 -3.2673 20 6 2.8646 4.4325 -4.2341 21 6 4.0626 3.8465 -3.8707 22 6 4.3258 3.5793 -2.5402 23 7 4.2023 -0.0453 0.0015 24 6 3.4956 -1.1572 0.0060 25 6 4.2140 -2.4819 0.0118 26 6 3.3718 -3.7433 -0.1894 27 6 3.9524 -3.4222 1.1901 28 7 2.1777 -1.1432 0.0056 29 1 -0.3633 0.0050 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3634 -0.8925 -0.5094 32 1 1.6862 2.1381 -0.0004 33 1 5.3139 2.2661 0.0641 34 1 5.5537 4.6614 -0.0462 35 1 4.1263 5.6745 0.2770 36 1 6.4608 7.1174 2.6361 37 1 1.4612 4.7304 -1.1813 38 1 0.9908 5.2029 -3.5517 39 1 2.6589 4.6412 -5.2736 40 1 4.7935 3.5982 -4.6261 41 1 5.2625 3.1229 -2.2561 42 1 5.2180 -2.4740 -0.4125 43 1 2.2980 -3.6149 -0.3264 44 1 3.8218 -4.5654 -0.7459 45 1 4.7842 -4.0333 1.5406 46 1 3.2610 -3.0826 1.9612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164346141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:59 Heat of formation + Delta-G solvation = 75.788976 kcal Electronic energy + Delta-G solvation = -26717.012629 eV Core-core repulsion = 23185.213507 eV Total energy + Delta-G solvation = -3531.799123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02597 -40.41473 -38.33499 -37.43403 -35.47633 -34.68116 -33.14290 -31.81613 -31.19978 -30.43923 -29.01209 -26.95121 -25.87396 -23.85249 -23.51278 -23.25597 -22.88252 -22.06937 -21.12304 -19.04139 -18.53960 -17.94551 -17.57686 -16.76434 -16.64701 -16.38165 -16.14538 -15.98858 -15.84892 -15.33565 -14.97303 -14.67377 -14.36355 -14.21783 -14.12752 -13.89598 -13.68388 -13.46311 -13.16483 -13.11149 -12.94299 -12.69096 -12.60355 -12.46041 -12.30327 -12.08462 -11.89224 -11.67330 -11.53762 -11.45338 -11.30045 -11.26252 -10.63747 -10.34490 -10.12539 -9.78866 -9.58054 -9.02276 -8.24841 -6.34573 0.11573 0.45287 0.48103 0.53396 1.35175 1.36752 1.46505 2.06972 2.35645 2.67767 2.92633 3.03576 3.10131 3.18554 3.41147 3.79876 3.89540 3.96039 3.98550 4.17166 4.17764 4.21441 4.26504 4.30920 4.33548 4.50958 4.58989 4.63930 4.69789 4.76214 4.77455 4.80863 4.91270 4.99110 5.08413 5.10129 5.17030 5.19851 5.27565 5.36512 5.37790 5.51403 5.58531 5.62528 5.71045 5.75135 5.93575 6.10930 6.16137 6.41813 6.64765 6.78271 7.34466 7.39916 8.85918 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007904 B = 0.004800 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.450793 B = 5831.471350 C = 8146.322952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.195 3.805 3 C -0.310 4.310 4 C 0.437 3.563 5 N -0.683 5.683 6 C 0.209 3.791 7 H 0.080 0.920 8 C 0.037 3.963 9 C -0.529 4.529 10 H 0.053 0.947 11 C 0.012 3.988 12 N -0.925 5.925 13 Si 0.953 3.047 14 H -0.278 1.278 15 H -0.280 1.280 16 H -0.270 1.270 17 C -0.102 4.102 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.122 4.122 23 N -0.608 5.608 24 C 0.377 3.623 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.148 4.148 28 N -0.574 5.574 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.402 0.598 34 H -0.001 1.001 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 -13.259 -9.542 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 C -0.338 4.338 4 C 0.193 3.807 5 N -0.310 5.310 6 C 0.104 3.896 7 H 0.098 0.902 8 C 0.000 4.000 9 C -0.567 4.567 10 H 0.071 0.929 11 C -0.187 4.187 12 N -0.565 5.565 13 Si 0.779 3.221 14 H -0.204 1.204 15 H -0.205 1.205 16 H -0.194 1.194 17 C -0.104 4.104 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.141 4.141 23 N -0.334 5.334 24 C 0.108 3.892 25 C -0.143 4.143 26 C -0.171 4.171 27 C -0.186 4.186 28 N -0.296 5.296 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.237 0.763 34 H 0.018 0.982 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.119 0.881 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.825 -13.681 -9.507 19.341 hybrid contribution 0.894 1.424 1.213 2.073 sum -8.931 -12.256 -8.294 17.285 Atomic orbital electron populations 1.20801 0.85374 1.04776 1.04379 1.21921 0.98798 0.86948 0.87063 1.22092 0.93276 1.01521 1.16913 1.18786 0.89268 0.86395 0.86265 1.44624 1.09033 1.01922 1.75437 1.19955 0.96653 0.81865 0.91120 0.90214 1.19124 0.93555 0.92716 0.94643 1.21382 1.34372 1.06834 0.94084 0.92892 1.25745 0.95319 0.94841 1.02766 1.70059 1.36890 1.11927 1.37615 0.85623 0.78554 0.77548 0.80364 1.20350 1.20505 1.19430 1.20459 0.95298 0.99312 0.95307 1.21229 0.96218 0.99194 0.97607 1.21435 1.00497 0.99574 0.92139 1.21466 0.93546 0.98681 1.00752 1.21369 0.98424 0.99519 0.95432 1.20987 0.98760 1.00507 0.93808 1.67628 1.42330 0.97845 1.25635 1.22272 0.86616 0.92455 0.87838 1.20722 1.00214 0.85127 1.08264 1.23058 1.00152 0.95337 0.98527 1.23018 1.03726 1.00420 0.91436 1.67998 1.08809 1.30118 1.22645 0.88805 0.88860 0.89307 0.83730 0.76294 0.98227 0.96435 0.92692 0.85078 0.83172 0.83305 0.84646 0.87913 0.85496 0.88092 0.85825 0.85918 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 10.21 71.24 0.73 -1.19 16 2 C 0.19 5.83 6.81 42.42 0.29 6.11 16 3 C -0.31 -10.44 8.97 22.58 0.20 -10.24 16 4 C 0.44 16.67 7.65 133.16 1.02 17.68 16 5 N -0.68 -26.91 4.21 -327.63 -1.38 -28.29 16 6 C 0.21 8.28 1.87 44.25 0.08 8.37 16 7 H 0.08 3.14 6.30 -2.39 -0.02 3.12 16 8 C 0.04 1.83 4.48 29.85 0.13 1.96 16 9 C -0.53 -28.63 8.84 25.60 0.23 -28.40 16 10 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 11 C 0.01 0.68 5.46 84.66 0.46 1.14 16 12 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 13 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C -0.10 -3.58 4.86 -19.87 -0.10 -3.68 16 18 C -0.12 -3.69 9.67 22.27 0.22 -3.47 16 19 C -0.12 -2.90 10.05 22.27 0.22 -2.68 16 20 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 21 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 22 C -0.12 -4.16 9.32 22.27 0.21 -3.95 16 23 N -0.61 -23.24 10.37 -185.44 -1.92 -25.17 16 24 C 0.38 12.69 7.31 138.76 1.01 13.71 16 25 C -0.12 -3.20 6.23 -11.54 -0.07 -3.27 16 26 C -0.13 -2.58 10.01 30.62 0.31 -2.28 16 27 C -0.15 -3.07 10.24 30.62 0.31 -2.76 16 28 N -0.57 -18.27 9.28 -176.28 -1.64 -19.90 16 29 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.14 4.53 6.31 -2.91 -0.02 4.52 16 33 H 0.40 16.65 8.71 -92.71 -0.81 15.84 16 34 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.13 3.50 8.04 -2.91 -0.02 3.48 16 38 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.10 3.67 7.72 -2.91 -0.02 3.65 16 42 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.10 2.16 7.54 -2.38 -0.02 2.14 16 44 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.94 388.16 3.25 -63.68 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.18 Total: 36.69 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.70 Total: -19.13 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -4.65 Total: -127.33 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -66.94 3.25 -63.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164346141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.473 kcal (2) G-P(sol) polarization free energy of solvation -66.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds