Wall clock time and date at job start Tue Mar 31 2020 13:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38117 * 120.39943 * 2 1 4 4 C 1.39627 * 118.32750 * 180.24359 * 3 2 1 5 5 N 1.38551 * 120.52922 * 179.80641 * 4 3 2 6 6 C 1.46497 * 119.99952 * 354.88420 * 5 4 3 7 7 H 1.09007 * 109.46922 * 325.46905 * 6 5 4 8 8 C 1.52999 * 109.47345 * 205.47551 * 6 5 4 9 9 C 1.50706 * 109.47144 * 65.29550 * 8 6 5 10 10 H 1.07994 * 120.00218 * 355.17205 * 9 8 6 11 11 C 1.37877 * 119.99894 * 175.16419 * 9 8 6 12 12 N 1.31515 * 120.00029 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99937 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46786 * 90.00082 * 13 11 9 15 15 H 1.48495 * 109.47118 * 210.00048 * 13 11 9 16 16 H 1.48491 * 109.47172 * 330.00133 * 13 11 9 17 17 C 1.50697 * 109.47388 * 85.47279 * 6 5 4 18 18 C 1.38235 * 119.99725 * 39.72565 * 17 6 5 19 19 C 1.38235 * 119.99628 * 179.81245 * 18 17 6 20 20 C 1.38241 * 120.00123 * 0.39223 * 19 18 17 21 21 C 1.38239 * 119.99672 * 359.86399 * 20 19 18 22 22 C 1.38225 * 120.00143 * 359.95090 * 21 20 19 23 23 N 1.32989 * 118.94089 * 359.52541 * 4 3 2 24 24 C 1.31743 * 120.68642 * 0.25741 * 23 4 3 25 25 C 1.50700 * 119.08657 * 179.97438 * 24 23 4 26 26 C 1.53003 * 117.49938 * 188.74526 * 25 24 23 27 27 C 1.53000 * 117.50240 * 120.08442 * 25 24 23 28 28 N 1.31792 * 121.83438 * 359.97405 * 24 23 4 29 29 H 1.08994 * 109.47065 * 270.23396 * 1 2 3 30 30 H 1.09004 * 109.47061 * 30.23053 * 1 2 3 31 31 H 1.08998 * 109.47272 * 150.23148 * 1 2 3 32 32 H 1.07993 * 120.83707 * 0.02562 * 3 2 1 33 33 H 0.96994 * 119.99886 * 174.60632 * 5 4 3 34 34 H 1.08994 * 109.47730 * 185.30092 * 8 6 5 35 35 H 1.09001 * 109.46784 * 305.30231 * 8 6 5 36 36 H 0.96995 * 120.00039 * 179.97438 * 12 11 9 37 37 H 1.07995 * 120.00132 * 359.97438 * 18 17 6 38 38 H 1.07994 * 119.99953 * 180.23249 * 19 18 17 39 39 H 1.07996 * 119.99913 * 179.82822 * 20 19 18 40 40 H 1.08006 * 119.99294 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.99992 * 180.02562 * 22 21 20 42 42 H 1.09000 * 115.54998 * 334.41469 * 25 24 23 43 43 H 1.08991 * 117.49879 * 0.02562 * 26 25 24 44 44 H 1.09006 * 117.49585 * 145.02071 * 26 25 24 45 45 H 1.09003 * 117.49871 * 214.97968 * 27 25 24 46 46 H 1.08996 * 117.49607 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1408 -0.0052 5 7 4.3477 2.3080 -0.0095 6 6 3.6774 3.6058 -0.1217 7 1 2.8023 3.5084 -0.7643 8 6 4.6424 4.6278 -0.7259 9 6 4.9710 4.2321 -2.1425 10 1 4.5982 3.3012 -2.5434 11 6 5.7474 5.0587 -2.9266 12 7 6.2018 6.1921 -2.4383 13 14 6.1541 4.5686 -4.6827 14 1 5.1095 5.0945 -5.5979 15 1 7.4741 5.1338 -5.0613 16 1 6.2019 3.0880 -4.7849 17 6 3.2470 4.0689 1.2463 18 6 4.0753 3.8710 2.3352 19 6 3.6822 4.2993 3.5894 20 6 2.4574 4.9182 3.7560 21 6 1.6269 5.1112 2.6679 22 6 2.0216 4.6864 1.4132 23 7 4.2023 -0.0455 -0.0003 24 6 3.4956 -1.1573 0.0042 25 6 4.2139 -2.4820 0.0090 26 6 3.3715 -3.7433 -0.1922 27 6 3.9531 -3.4229 1.1870 28 7 2.1777 -1.1433 0.0046 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5174 31 1 -0.3634 -0.8920 -0.5102 32 1 1.6862 2.1380 0.0004 33 1 5.3138 2.2661 0.0659 34 1 4.1769 5.6133 -0.7226 35 1 5.5579 4.6564 -0.1351 36 1 6.7483 6.7734 -2.9898 37 1 5.0306 3.3842 2.2056 38 1 4.3309 4.1481 4.4395 39 1 2.1491 5.2502 4.7363 40 1 0.6698 5.5944 2.7983 41 1 1.3729 4.8377 0.5630 42 1 5.2176 -2.4741 -0.4160 43 1 2.2978 -3.6148 -0.3285 44 1 3.8211 -4.5653 -0.7493 45 1 4.7851 -4.0342 1.5367 46 1 3.2623 -3.0835 1.9587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164346262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:02 Heat of formation + Delta-G solvation = 75.445043 kcal Electronic energy + Delta-G solvation = -26719.404740 eV Core-core repulsion = 23187.590704 eV Total energy + Delta-G solvation = -3531.814037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.02931 -40.41477 -38.33116 -37.43364 -35.47653 -34.68855 -33.13854 -31.81518 -31.19971 -30.43971 -29.00958 -26.94537 -25.87545 -23.84959 -23.52016 -23.24966 -22.87917 -22.05599 -21.13750 -19.04587 -18.54803 -17.94080 -17.58984 -16.79334 -16.63946 -16.24790 -16.15406 -16.00701 -15.92140 -15.30721 -14.97872 -14.66610 -14.36816 -14.21348 -14.14654 -13.89244 -13.68377 -13.46497 -13.17298 -13.04908 -12.97889 -12.71395 -12.61679 -12.42312 -12.32201 -12.07906 -11.87887 -11.70662 -11.53053 -11.46332 -11.30791 -11.25643 -10.63876 -10.34039 -10.12805 -9.78140 -9.57022 -9.02867 -8.25233 -6.34820 0.11558 0.46137 0.47620 0.54132 1.34388 1.36082 1.46145 2.06779 2.35295 2.67981 2.93383 3.03135 3.09401 3.19149 3.40611 3.78296 3.90934 3.95748 3.99621 4.17646 4.18566 4.21414 4.27742 4.31308 4.32525 4.51828 4.58905 4.63325 4.70485 4.76431 4.77459 4.80533 4.91216 4.98991 5.08295 5.10568 5.17735 5.20024 5.27421 5.36135 5.37536 5.51442 5.59217 5.63378 5.70934 5.75291 5.93495 6.11088 6.16625 6.41632 6.64411 6.77793 7.34134 7.39941 8.85464 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007908 B = 0.004804 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3539.759012 B = 5827.497812 C = 8148.165485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.194 3.806 3 C -0.309 4.309 4 C 0.436 3.564 5 N -0.682 5.682 6 C 0.210 3.790 7 H 0.079 0.921 8 C 0.037 3.963 9 C -0.528 4.528 10 H 0.051 0.949 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.275 1.275 17 C -0.101 4.101 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.125 4.125 23 N -0.609 5.609 24 C 0.377 3.623 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.142 4.142 28 N -0.574 5.574 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.401 0.599 34 H 0.018 0.982 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.321 -11.976 10.629 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 C -0.337 4.337 4 C 0.192 3.808 5 N -0.310 5.310 6 C 0.105 3.895 7 H 0.097 0.903 8 C -0.001 4.001 9 C -0.566 4.566 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.779 3.221 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.200 1.200 17 C -0.103 4.103 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.143 4.143 23 N -0.335 5.335 24 C 0.108 3.892 25 C -0.146 4.146 26 C -0.174 4.174 27 C -0.180 4.180 28 N -0.295 5.295 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.163 0.837 33 H 0.236 0.764 34 H 0.036 0.964 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.119 0.881 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.876 -12.407 10.544 19.580 hybrid contribution 1.009 1.273 -1.156 1.993 sum -9.867 -11.134 9.388 17.591 Atomic orbital electron populations 1.20797 0.85332 1.04689 1.04471 1.21935 0.98819 0.86952 0.87071 1.22088 0.93174 1.01528 1.16881 1.18803 0.89299 0.86380 0.86344 1.44611 1.08936 1.01947 1.75472 1.19950 0.96002 0.81606 0.91987 0.90338 1.19134 0.93222 0.93318 0.94400 1.21369 1.31799 1.05191 0.98275 0.93121 1.25732 0.95765 0.94876 1.02262 1.70054 1.36023 1.12141 1.38237 0.85627 0.77815 0.78238 0.80439 1.19640 1.20648 1.20023 1.20440 0.95396 0.99295 0.95131 1.20979 0.99217 1.00466 0.93392 1.21370 0.97675 0.98879 0.96731 1.21470 0.93966 0.98942 1.00050 1.21429 1.00801 0.99405 0.91930 1.21220 0.95445 0.98886 0.98751 1.67629 1.42388 0.97898 1.25593 1.22264 0.86627 0.92440 0.87862 1.20719 1.00147 0.85182 1.08517 1.23058 1.00149 0.95347 0.98856 1.23015 1.03635 1.00075 0.91256 1.68002 1.08768 1.30133 1.22634 0.88510 0.88997 0.89442 0.83682 0.76359 0.96424 0.98167 0.92678 0.87883 0.84622 0.83313 0.83194 0.85142 0.85778 0.88095 0.86035 0.85832 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.21 71.24 0.73 -1.17 16 2 C 0.19 5.81 6.81 42.42 0.29 6.10 16 3 C -0.31 -10.38 8.83 22.58 0.20 -10.18 16 4 C 0.44 16.72 7.68 133.16 1.02 17.75 16 5 N -0.68 -26.98 4.17 -327.62 -1.37 -28.35 16 6 C 0.21 8.31 1.81 44.24 0.08 8.39 16 7 H 0.08 3.11 6.58 -2.38 -0.02 3.10 16 8 C 0.04 1.82 4.50 29.85 0.13 1.95 16 9 C -0.53 -28.85 8.84 25.60 0.23 -28.63 16 10 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 11 C 0.01 0.70 5.46 84.65 0.46 1.16 16 12 N -0.92 -54.38 13.29 21.45 0.28 -54.09 16 13 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 C -0.10 -3.50 4.58 -19.87 -0.09 -3.59 16 18 C -0.12 -4.08 9.33 22.27 0.21 -3.87 16 19 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 20 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 21 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 22 C -0.12 -3.65 9.67 22.27 0.22 -3.44 16 23 N -0.61 -23.56 10.37 -185.44 -1.92 -25.48 16 24 C 0.38 12.82 7.31 138.77 1.01 13.84 16 25 C -0.13 -3.31 6.23 -11.54 -0.07 -3.38 16 26 C -0.14 -2.71 10.01 30.62 0.31 -2.40 16 27 C -0.14 -2.84 10.24 30.62 0.31 -2.53 16 28 N -0.57 -18.34 9.28 -176.28 -1.64 -19.98 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.15 4.52 6.31 -2.91 -0.02 4.51 16 33 H 0.40 16.62 8.73 -92.71 -0.81 15.81 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.10 3.61 7.71 -2.91 -0.02 3.59 16 38 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.13 3.45 8.04 -2.91 -0.02 3.43 16 42 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.10 2.21 7.54 -2.39 -0.02 2.19 16 44 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -67.40 387.97 3.27 -64.14 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.17 Total: 35.97 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 5.71 Total: -18.62 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -4.64 Total: -127.91 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -67.40 3.27 -64.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164346262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.581 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds