Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81390 * 103.00480 * 2 1 4 4 H 1.08999 * 110.36994 * 52.81262 * 3 2 1 5 5 C 1.54387 * 110.32454 * 290.63766 * 3 2 1 6 6 N 1.48558 * 104.59320 * 217.24805 * 5 3 2 7 7 C 1.46903 * 110.99510 * 159.03648 * 6 5 3 8 8 C 1.53000 * 109.47059 * 74.58680 * 7 6 5 9 9 H 1.09005 * 109.46522 * 304.99436 * 8 7 6 10 10 C 1.47201 * 109.47399 * 64.99566 * 8 7 6 11 11 N 7.25165 * 92.10228 * 342.51679 * 2 1 3 12 12 C 1.53000 * 109.47044 * 184.99745 * 8 7 6 13 13 C 1.50703 * 109.47218 * 174.99651 * 12 8 7 14 14 H 1.07998 * 119.99765 * 359.97438 * 13 12 8 15 15 C 1.37869 * 120.00440 * 180.02562 * 13 12 8 16 16 N 1.31521 * 119.99974 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00562 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46965 * 59.99598 * 17 15 13 19 19 H 1.48499 * 109.47556 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46993 * 300.00121 * 17 15 13 21 21 C 1.48564 * 104.22434 * 39.48191 * 6 5 3 22 22 C 1.54264 * 110.32833 * 175.00108 * 3 2 1 23 23 H 1.09002 * 110.32021 * 237.89145 * 22 3 2 24 24 N 1.46894 * 110.32053 * 359.97438 * 22 3 2 25 25 C 1.48534 * 110.99733 * 168.13797 * 24 22 3 26 26 C 1.54946 * 103.22480 * 159.72447 * 25 24 22 27 27 C 1.54596 * 102.92234 * 322.58504 * 26 25 24 28 28 C 1.47895 * 111.00481 * 285.53546 * 24 22 3 29 29 H 1.09003 * 109.47045 * 59.99697 * 1 2 3 30 30 H 1.09003 * 109.47801 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47467 * 300.00272 * 1 2 3 32 32 H 1.09002 * 110.40657 * 336.02910 * 5 3 2 33 33 H 1.08995 * 110.40935 * 98.46762 * 5 3 2 34 34 H 1.09007 * 109.46878 * 194.58038 * 7 6 5 35 35 H 1.08998 * 109.47384 * 314.58191 * 7 6 5 36 36 H 1.09002 * 109.47455 * 294.99653 * 12 8 7 37 37 H 1.09004 * 109.47182 * 54.99853 * 12 8 7 38 38 H 0.96995 * 120.00219 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.41057 * 201.73285 * 21 6 5 40 40 H 1.09001 * 110.50764 * 79.34293 * 21 6 5 41 41 H 1.08993 * 110.66952 * 278.15657 * 25 24 22 42 42 H 1.08994 * 110.66949 * 41.29292 * 25 24 22 43 43 H 1.08999 * 110.72253 * 204.22816 * 26 25 24 44 44 H 1.08996 * 110.72145 * 80.94587 * 26 25 24 45 45 H 1.08996 * 110.30993 * 263.04436 * 27 26 25 46 46 H 1.08998 * 110.30556 * 140.87380 * 27 26 25 47 47 H 1.09002 * 109.91609 * 333.51060 * 28 24 22 48 48 H 1.09008 * 109.91898 * 94.60527 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7057 2.2760 0.8141 5 6 1.8456 2.4047 -1.3548 6 7 2.9257 3.3901 -1.6180 7 6 3.0013 3.7189 -3.0478 8 6 1.8340 4.6341 -3.4230 9 1 0.8949 4.1617 -3.1347 10 6 1.9728 5.9198 -2.7198 11 7 2.0799 6.9120 -2.1771 12 6 1.8407 4.8758 -4.9338 13 6 0.6228 5.6749 -5.3200 14 1 -0.0854 5.9796 -4.5637 15 6 0.4120 6.0162 -6.6391 16 7 1.2741 5.6448 -7.5603 17 14 -1.0980 7.0062 -7.1180 18 1 -1.0802 8.3105 -6.4083 19 1 -1.0915 7.2409 -8.5843 20 1 -2.3223 6.2547 -6.7419 21 6 4.1632 2.7054 -1.1631 22 6 3.7468 1.9653 0.1260 23 1 3.9788 2.5695 1.0031 24 7 4.4247 0.6648 0.2100 25 6 5.8930 0.8185 0.0460 26 6 6.4574 -0.4825 0.6702 27 6 5.5186 -0.7238 1.8745 28 6 4.2298 0.0504 1.5411 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8230 1.6470 -2.1381 33 1 0.8813 2.9077 -1.2834 34 1 3.9429 4.2278 -3.2543 35 1 2.9475 2.8021 -3.6348 36 1 2.7395 5.4272 -5.2096 37 1 1.8274 3.9185 -5.4549 38 1 1.1260 5.8853 -8.4882 39 1 4.9439 3.4349 -0.9474 40 1 4.5053 1.9950 -1.9157 41 1 6.1573 0.8850 -1.0093 42 1 6.2514 1.6927 0.5893 43 1 7.4843 -0.3357 1.0050 44 1 6.3960 -1.3084 -0.0384 45 1 5.9679 -0.3350 2.7883 46 1 5.3045 -1.7874 1.9801 47 1 4.0595 0.8267 2.2871 48 1 3.3799 -0.6316 1.5145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362011887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = 36.862619 kcal Electronic energy + Delta-G solvation = -25561.714888 eV Core-core repulsion = 22163.671743 eV Total energy + Delta-G solvation = -3398.043145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00464 -38.11876 -36.19353 -33.96019 -32.92404 -31.44727 -30.31703 -29.25946 -28.59209 -27.72068 -26.21335 -23.60103 -22.17135 -21.79872 -21.55386 -20.44427 -20.20982 -17.17664 -16.83251 -16.51480 -16.30803 -15.84299 -15.45932 -14.76961 -14.54554 -14.38808 -14.18836 -13.95209 -13.60610 -13.29837 -13.15632 -13.13572 -12.86313 -12.63633 -12.47043 -12.29470 -12.03437 -11.92981 -11.67236 -11.43172 -11.40462 -11.28665 -11.19066 -11.17439 -11.06527 -11.01903 -10.81217 -10.64557 -10.54029 -10.19021 -9.73107 -9.54216 -9.24747 -8.66895 -8.48544 -8.43683 -7.48055 -6.09837 -4.13147 1.62837 2.56422 3.30620 3.35022 3.38588 3.63958 3.73817 3.83176 4.13464 4.24630 4.34009 4.41503 4.44528 4.65706 4.75205 4.90831 4.97678 5.06763 5.09942 5.11716 5.15487 5.26351 5.28170 5.30941 5.41551 5.47852 5.54353 5.57910 5.62063 5.62972 5.68266 5.73078 5.80310 5.83176 5.88872 5.92450 5.98675 6.02392 6.32064 6.45761 6.67642 6.70651 6.91160 7.04292 7.42011 7.52112 7.85028 8.22661 8.58031 8.91211 9.52270 11.01037 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002870 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.640467 B = 9754.842101 C =10340.805986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 S -0.185 6.185 3 C -0.060 4.060 4 H 0.091 0.909 5 C 0.039 3.961 6 N -0.510 5.510 7 C 0.053 3.947 8 C 0.014 3.986 9 H 0.098 0.902 10 C 0.257 3.743 11 N -0.480 5.480 12 C 0.032 3.968 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.041 3.959 22 C 0.093 3.907 23 H 0.062 0.938 24 N -0.501 5.501 25 C 0.033 3.967 26 C -0.122 4.122 27 C -0.131 4.131 28 C 0.030 3.970 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -16.530 17.664 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 S 0.042 5.958 3 C -0.190 4.190 4 H 0.110 0.890 5 C -0.091 4.091 6 N -0.234 5.234 7 C -0.076 4.076 8 C -0.008 4.008 9 H 0.115 0.885 10 C -0.060 4.060 11 N -0.157 5.157 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.088 4.088 22 C -0.017 4.017 23 H 0.079 0.921 24 N -0.226 5.226 25 C -0.094 4.094 26 C -0.160 4.160 27 C -0.169 4.169 28 C -0.098 4.098 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.512 -15.704 18.158 25.154 hybrid contribution -1.397 1.184 -0.397 1.873 sum 6.115 -14.520 17.761 23.741 Atomic orbital electron populations 1.23615 0.98307 1.05917 1.04708 1.87248 1.02737 1.08469 1.97306 1.24111 0.98592 0.95172 1.01139 0.89033 1.23568 0.96685 0.94212 0.94649 1.65479 1.02732 1.36685 1.18485 1.22416 0.99575 0.99060 0.86587 1.19170 0.98471 0.85034 0.98133 0.88457 1.28859 0.91851 0.94174 0.91144 1.80978 1.09979 1.12387 1.12393 1.19170 0.98323 0.98385 0.84791 1.21091 1.07582 1.34757 0.93060 0.92605 1.24944 0.96562 0.95819 0.96580 1.69927 1.35703 1.45981 1.01389 0.86659 0.83299 0.80790 0.77369 1.20231 1.21163 1.20063 1.23142 0.93773 0.96452 0.95415 1.22343 0.91293 0.89703 0.98394 0.92056 1.64860 1.08350 1.19953 1.29395 1.23243 0.87715 0.97023 1.01459 1.22456 0.98351 0.97847 0.97374 1.22416 0.95474 1.00952 0.98063 1.23224 0.98983 0.98676 0.88964 0.90573 0.88609 0.91152 0.91498 0.89749 0.90106 0.92146 0.95568 0.94431 0.92724 0.90071 0.91950 0.89794 0.93728 0.91267 0.90659 0.91901 0.91061 0.94107 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.69 101.05 1.08 -0.28 16 2 S -0.18 -1.90 17.19 -107.50 -1.85 -3.75 16 3 C -0.06 -0.65 3.47 -25.34 -0.09 -0.74 16 4 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.04 0.47 5.40 -2.18 -0.01 0.46 16 6 N -0.51 -6.84 5.04 -229.97 -1.16 -8.00 16 7 C 0.05 0.79 4.19 -3.82 -0.02 0.77 16 8 C 0.01 0.26 2.26 -93.41 -0.21 0.05 16 9 H 0.10 1.71 7.28 -51.93 -0.38 1.33 16 10 C 0.26 5.39 13.67 -20.76 -0.28 5.11 16 11 N -0.48 -10.97 18.54 42.15 0.78 -10.19 16 12 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 13 C -0.53 -14.04 8.60 -34.44 -0.30 -14.33 16 14 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.04 0.47 5.12 -2.18 -0.01 0.46 16 22 C 0.09 0.98 2.60 -66.34 -0.17 0.80 16 23 H 0.06 0.66 7.78 -51.93 -0.40 0.25 16 24 N -0.50 -4.87 3.99 -220.86 -0.88 -5.75 16 25 C 0.03 0.28 5.56 -1.89 -0.01 0.27 16 26 C -0.12 -0.89 7.06 -24.87 -0.18 -1.06 16 27 C -0.13 -0.95 6.93 -25.37 -0.18 -1.12 16 28 C 0.03 0.26 5.64 -2.76 -0.02 0.25 16 29 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 0.84 7.43 -51.93 -0.39 0.45 16 33 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 34 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.06 0.85 7.77 -51.93 -0.40 0.44 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.72 7.26 -51.93 -0.38 0.34 16 41 H 0.08 0.72 7.53 -51.93 -0.39 0.33 16 42 H 0.04 0.37 8.02 -51.93 -0.42 -0.04 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.36 7.55 -51.93 -0.39 -0.03 16 48 H 0.10 0.98 5.78 -42.50 -0.25 0.74 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -29.76 387.66 -10.56 -40.31 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -8.40 Total: -2.87 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.61 Total: -7.12 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.52 Total: -48.72 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -1.85 Total: -3.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.76 -10.56 -40.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362011887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.177 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds