Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81390 * 103.00480 * 2 1 4 4 H 1.08999 * 110.36994 * 52.81262 * 3 2 1 5 5 C 1.54387 * 110.32454 * 290.63766 * 3 2 1 6 6 N 1.48558 * 104.59320 * 217.24805 * 5 3 2 7 7 C 1.46903 * 110.99510 * 159.03648 * 6 5 3 8 8 C 1.53000 * 109.47059 * 74.58680 * 7 6 5 9 9 H 1.09005 * 109.46522 * 304.99436 * 8 7 6 10 10 C 1.47201 * 109.47399 * 64.99566 * 8 7 6 11 11 N 7.25165 * 92.10228 * 342.51679 * 2 1 3 12 12 C 1.53000 * 109.47044 * 184.99745 * 8 7 6 13 13 C 1.50703 * 109.47218 * 174.99651 * 12 8 7 14 14 H 1.07998 * 119.99765 * 359.97438 * 13 12 8 15 15 C 1.37869 * 120.00440 * 180.02562 * 13 12 8 16 16 N 1.31521 * 119.99974 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00562 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46965 * 59.99598 * 17 15 13 19 19 H 1.48499 * 109.47556 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46993 * 300.00121 * 17 15 13 21 21 C 1.48564 * 104.22434 * 39.48191 * 6 5 3 22 22 C 1.54264 * 110.32833 * 175.00108 * 3 2 1 23 23 H 1.09002 * 110.32021 * 237.89145 * 22 3 2 24 24 N 1.46894 * 110.32053 * 359.97438 * 22 3 2 25 25 C 1.48534 * 110.99733 * 168.13797 * 24 22 3 26 26 C 1.54946 * 103.22480 * 159.72447 * 25 24 22 27 27 C 1.54596 * 102.92234 * 322.58504 * 26 25 24 28 28 C 1.47895 * 111.00481 * 285.53546 * 24 22 3 29 29 H 1.09003 * 109.47045 * 59.99697 * 1 2 3 30 30 H 1.09003 * 109.47801 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47467 * 300.00272 * 1 2 3 32 32 H 1.09002 * 110.40657 * 336.02910 * 5 3 2 33 33 H 1.08995 * 110.40935 * 98.46762 * 5 3 2 34 34 H 1.09007 * 109.46878 * 194.58038 * 7 6 5 35 35 H 1.08998 * 109.47384 * 314.58191 * 7 6 5 36 36 H 1.09002 * 109.47455 * 294.99653 * 12 8 7 37 37 H 1.09004 * 109.47182 * 54.99853 * 12 8 7 38 38 H 0.96995 * 120.00219 * 180.02562 * 16 15 13 39 39 H 1.09000 * 110.41057 * 201.73285 * 21 6 5 40 40 H 1.09001 * 110.50764 * 79.34293 * 21 6 5 41 41 H 1.08993 * 110.66952 * 278.15657 * 25 24 22 42 42 H 1.08994 * 110.66949 * 41.29292 * 25 24 22 43 43 H 1.08999 * 110.72253 * 204.22816 * 26 25 24 44 44 H 1.08996 * 110.72145 * 80.94587 * 26 25 24 45 45 H 1.08996 * 110.30993 * 263.04436 * 27 26 25 46 46 H 1.08998 * 110.30556 * 140.87380 * 27 26 25 47 47 H 1.09002 * 109.91609 * 333.51060 * 28 24 22 48 48 H 1.09008 * 109.91898 * 94.60527 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7057 2.2760 0.8141 5 6 1.8456 2.4047 -1.3548 6 7 2.9257 3.3901 -1.6180 7 6 3.0013 3.7189 -3.0478 8 6 1.8340 4.6341 -3.4230 9 1 0.8949 4.1617 -3.1347 10 6 1.9728 5.9198 -2.7198 11 7 2.0799 6.9120 -2.1771 12 6 1.8407 4.8758 -4.9338 13 6 0.6228 5.6749 -5.3200 14 1 -0.0854 5.9796 -4.5637 15 6 0.4120 6.0162 -6.6391 16 7 1.2741 5.6448 -7.5603 17 14 -1.0980 7.0062 -7.1180 18 1 -1.0802 8.3105 -6.4083 19 1 -1.0915 7.2409 -8.5843 20 1 -2.3223 6.2547 -6.7419 21 6 4.1632 2.7054 -1.1631 22 6 3.7468 1.9653 0.1260 23 1 3.9788 2.5695 1.0031 24 7 4.4247 0.6648 0.2100 25 6 5.8930 0.8185 0.0460 26 6 6.4574 -0.4825 0.6702 27 6 5.5186 -0.7238 1.8745 28 6 4.2298 0.0504 1.5411 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8230 1.6470 -2.1381 33 1 0.8813 2.9077 -1.2834 34 1 3.9429 4.2278 -3.2543 35 1 2.9475 2.8021 -3.6348 36 1 2.7395 5.4272 -5.2096 37 1 1.8274 3.9185 -5.4549 38 1 1.1260 5.8853 -8.4882 39 1 4.9439 3.4349 -0.9474 40 1 4.5053 1.9950 -1.9157 41 1 6.1573 0.8850 -1.0093 42 1 6.2514 1.6927 0.5893 43 1 7.4843 -0.3357 1.0050 44 1 6.3960 -1.3084 -0.0384 45 1 5.9679 -0.3350 2.7883 46 1 5.3045 -1.7874 1.9801 47 1 4.0595 0.8267 2.2871 48 1 3.3799 -0.6316 1.5145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362011887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = 19.828855 kcal Electronic energy + Delta-G solvation = -25562.453528 eV Core-core repulsion = 22163.671743 eV Total energy + Delta-G solvation = -3398.781784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.173 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86745 -39.11681 -37.67640 -35.65811 -34.44038 -32.74010 -31.28763 -29.97420 -29.44025 -28.73278 -27.67149 -24.98469 -23.59331 -22.89184 -22.50794 -21.21598 -21.02927 -18.58398 -18.14469 -17.86749 -17.47513 -16.74775 -16.45739 -16.23668 -15.80116 -15.33611 -15.13851 -14.96289 -14.72530 -14.44336 -14.21433 -14.05249 -13.96866 -13.84913 -13.70934 -13.49048 -13.31134 -13.10473 -13.01639 -12.93458 -12.58784 -12.49783 -12.39097 -12.28301 -12.09402 -12.01999 -11.96443 -11.93062 -11.71872 -11.41435 -11.37775 -11.13685 -10.55381 -10.50564 -9.51453 -9.39947 -8.28163 -8.19722 -6.28197 0.83684 1.40437 1.42219 1.49201 1.79711 2.04206 2.11885 2.40915 2.82395 3.15125 3.19249 3.31036 3.39081 3.48056 3.81777 3.98227 4.07010 4.13716 4.21527 4.28431 4.30739 4.40264 4.42418 4.45174 4.47066 4.62377 4.66483 4.71192 4.73700 4.80503 4.87437 4.88090 4.91306 4.94836 5.00887 5.02848 5.07512 5.18453 5.29934 5.40232 5.45441 5.58647 5.73431 5.77650 5.90152 6.02202 6.10831 6.20115 6.81880 6.91354 7.40314 8.91007 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002870 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.640467 B = 9754.842101 C =10340.805986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.196 6.196 3 C -0.056 4.056 4 H 0.092 0.908 5 C 0.040 3.960 6 N -0.521 5.521 7 C 0.064 3.936 8 C 0.026 3.974 9 H 0.112 0.888 10 C 0.267 3.733 11 N -0.513 5.513 12 C 0.039 3.961 13 C -0.540 4.540 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.923 5.923 17 Si 0.947 3.053 18 H -0.281 1.281 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.046 3.954 22 C 0.098 3.902 23 H 0.060 0.940 24 N -0.508 5.508 25 C 0.031 3.969 26 C -0.118 4.118 27 C -0.128 4.128 28 C 0.031 3.969 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.002 0.998 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 -17.583 18.655 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.031 5.969 3 C -0.186 4.186 4 H 0.110 0.890 5 C -0.089 4.089 6 N -0.245 5.245 7 C -0.065 4.065 8 C 0.004 3.996 9 H 0.130 0.870 10 C -0.049 4.049 11 N -0.191 5.191 12 C 0.000 4.000 13 C -0.578 4.578 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.773 3.227 18 H -0.207 1.207 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.083 4.083 22 C -0.012 4.012 23 H 0.078 0.922 24 N -0.233 5.233 25 C -0.097 4.097 26 C -0.156 4.156 27 C -0.166 4.166 28 C -0.098 4.098 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.283 -16.770 19.164 26.487 hybrid contribution -1.326 1.483 -0.687 2.105 sum 5.956 -15.287 18.477 24.710 Atomic orbital electron populations 1.23645 0.96876 1.06728 1.04906 1.87290 1.04357 1.07965 1.97303 1.24037 0.98823 0.95462 1.00233 0.88957 1.23567 0.96160 0.93829 0.95385 1.65414 1.04105 1.37868 1.17144 1.22217 0.97710 0.98621 0.87992 1.19090 1.00900 0.84743 0.94874 0.87022 1.29303 0.90797 0.94262 0.90557 1.80976 1.11293 1.13286 1.13505 1.18982 0.95920 0.97249 0.87814 1.21503 1.08510 1.34719 0.93096 0.92875 1.25699 0.99165 0.96941 0.96843 1.70022 1.37290 1.47257 1.01660 0.85767 0.80649 0.79163 0.77126 1.20707 1.20655 1.18742 1.23120 0.92881 0.96430 0.95836 1.22246 0.91226 0.90080 0.97673 0.92237 1.64857 1.09052 1.19346 1.30081 1.23287 0.87079 0.97812 1.01484 1.22444 0.99049 0.96958 0.97171 1.22411 0.94685 1.01094 0.98397 1.23201 0.99599 0.98539 0.88422 0.90895 0.87509 0.90416 0.91767 0.90049 0.90215 0.90948 0.97947 0.94722 0.92667 0.89843 0.91883 0.90065 0.93565 0.89902 0.91033 0.90988 0.90536 0.94342 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.69 113.37 1.21 -1.19 16 2 S -0.20 -3.78 17.19 -56.49 -0.97 -4.75 16 3 C -0.06 -1.13 3.47 31.49 0.11 -1.02 16 4 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.04 0.93 5.40 86.45 0.47 1.40 16 6 N -0.52 -13.40 5.04 -881.48 -4.44 -17.84 16 7 C 0.06 1.85 4.19 86.30 0.36 2.21 16 8 C 0.03 0.94 2.26 -12.60 -0.03 0.91 16 9 H 0.11 3.77 7.28 -2.38 -0.02 3.76 16 10 C 0.27 11.11 13.67 89.44 1.22 12.33 16 11 N -0.51 -23.31 18.54 20.01 0.37 -22.94 16 12 C 0.04 1.81 4.42 29.85 0.13 1.94 16 13 C -0.54 -28.70 8.60 25.60 0.22 -28.48 16 14 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 15 C 0.01 0.69 5.46 84.65 0.46 1.16 16 16 N -0.92 -53.01 13.29 21.45 0.28 -52.72 16 17 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 C 0.05 0.99 5.12 86.45 0.44 1.43 16 22 C 0.10 1.94 2.60 45.81 0.12 2.06 16 23 H 0.06 1.20 7.78 -2.39 -0.02 1.18 16 24 N -0.51 -9.22 3.99 -852.65 -3.40 -12.62 16 25 C 0.03 0.47 5.56 86.65 0.48 0.96 16 26 C -0.12 -1.50 7.06 31.80 0.22 -1.28 16 27 C -0.13 -1.61 6.93 31.47 0.22 -1.40 16 28 C 0.03 0.50 5.64 86.45 0.49 0.98 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.52 7.43 -2.39 -0.02 1.51 16 33 H 0.08 1.91 7.73 -2.39 -0.02 1.89 16 34 H 0.08 2.32 8.08 -2.38 -0.02 2.30 16 35 H 0.07 1.93 7.77 -2.39 -0.02 1.91 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.37 7.26 -2.39 -0.02 1.35 16 41 H 0.08 1.30 7.53 -2.39 -0.02 1.28 16 42 H 0.05 0.70 8.02 -2.39 -0.02 0.68 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 47 H 0.04 0.63 7.55 -2.39 -0.02 0.62 16 48 H 0.10 1.71 5.78 -8.37 -0.05 1.67 16 Total: -1.00 -62.23 387.66 0.89 -61.35 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.88 Total: 12.04 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 6.13 Total: -8.00 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -7.19 Total: -106.12 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -0.97 Total: -4.75 kcal Total: -62.23 0.89 -61.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362011887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.177 kcal (2) G-P(sol) polarization free energy of solvation -62.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds