Wall clock time and date at job start Tue Mar 31 2020 13:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46946 * 2 1 4 4 C 1.53001 * 109.47495 * 240.00313 * 2 1 3 5 5 C 1.53000 * 109.47150 * 120.00020 * 2 1 3 6 6 C 1.52996 * 109.47250 * 53.48067 * 5 2 1 7 7 H 1.08999 * 109.47017 * 305.92752 * 6 5 2 8 8 N 1.46892 * 109.47302 * 185.92678 * 6 5 2 9 9 C 1.46899 * 111.00316 * 82.62977 * 8 6 5 10 10 C 1.52995 * 109.47408 * 174.76717 * 9 8 6 11 11 C 1.53000 * 109.47543 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00326 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00184 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00362 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46945 * 90.00044 * 16 14 12 18 18 H 1.48498 * 109.47206 * 210.00119 * 16 14 12 19 19 H 1.48497 * 109.47325 * 330.00316 * 16 14 12 20 20 C 1.50705 * 109.47164 * 65.92315 * 6 5 2 21 21 C 1.38234 * 119.98663 * 236.38555 * 20 6 5 22 22 C 1.38216 * 120.01409 * 180.02562 * 21 20 6 23 23 C 1.38349 * 119.98527 * 0.25777 * 22 21 20 24 24 Cl 1.73597 * 120.01524 * 179.70156 * 23 22 21 25 25 C 1.38354 * 119.97178 * 359.46281 * 23 22 21 26 26 C 1.38214 * 119.98865 * 0.56089 * 25 23 22 27 27 H 1.09005 * 109.47005 * 293.00252 * 1 2 3 28 28 H 1.09004 * 109.47050 * 53.00219 * 1 2 3 29 29 H 1.08996 * 109.46946 * 173.00246 * 1 2 3 30 30 H 1.09004 * 109.46958 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47104 * 299.99775 * 3 2 1 32 32 H 1.08994 * 109.46597 * 60.00261 * 3 2 1 33 33 H 1.09007 * 109.46376 * 316.51776 * 4 2 1 34 34 H 1.09002 * 109.47354 * 76.51101 * 4 2 1 35 35 H 1.08989 * 109.47470 * 196.51979 * 4 2 1 36 36 H 1.09002 * 109.46991 * 293.47793 * 5 2 1 37 37 H 1.08999 * 109.46841 * 173.47898 * 5 2 1 38 38 H 1.00905 * 111.00341 * 318.67018 * 8 6 5 39 39 H 1.09001 * 109.46847 * 294.76484 * 9 8 6 40 40 H 1.08992 * 109.47110 * 54.76226 * 9 8 6 41 41 H 1.09001 * 109.46926 * 299.99718 * 10 9 8 42 42 H 1.09004 * 109.47714 * 59.99391 * 10 9 8 43 43 H 1.09001 * 109.46796 * 299.99818 * 11 10 9 44 44 H 1.08992 * 109.47026 * 59.99477 * 11 10 9 45 45 H 0.96999 * 120.00087 * 180.02562 * 15 14 12 46 46 H 1.08008 * 119.99847 * 359.97438 * 21 20 6 47 47 H 1.08004 * 120.01042 * 179.97438 * 22 21 20 48 48 H 1.08002 * 120.00596 * 180.25749 * 25 23 22 49 49 H 1.07997 * 119.99749 * 179.72601 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.4007 -2.1087 1.3338 7 1 0.3161 -2.0126 1.2842 8 7 1.7783 -2.7453 2.6027 9 6 0.9122 -2.2900 3.6984 10 6 1.2488 -3.0685 4.9717 11 6 0.3472 -2.5939 6.1131 12 6 0.6792 -3.3602 7.3675 13 1 1.4554 -4.1110 7.3521 14 6 -0.0086 -3.1036 8.5345 15 7 0.2808 -3.7727 9.6292 16 14 -1.3516 -1.8055 8.5610 17 1 -2.6542 -2.4340 8.2239 18 1 -1.4294 -1.2011 9.9152 19 1 -1.0391 -0.7494 7.5649 20 6 1.8831 -2.9550 0.1840 21 6 0.9709 -3.5305 -0.6806 22 6 1.4127 -4.3073 -1.7350 23 6 2.7680 -4.5132 -1.9219 24 17 3.3234 -5.4950 -3.2414 25 6 3.6807 -3.9322 -1.0596 26 6 3.2377 -3.1560 -0.0053 27 1 -0.3633 0.4016 0.9460 28 1 -0.3633 0.6185 -0.8208 29 1 -0.3633 -1.0200 -0.1252 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.4581 -1.6292 -1.4076 34 1 1.9352 -0.0669 -2.1148 35 1 3.0900 -0.9813 -1.1154 36 1 1.7751 -0.1444 2.1354 37 1 3.1237 -0.8234 1.1927 38 1 2.7501 -2.5775 2.8163 39 1 1.0727 -1.2257 3.8701 40 1 -0.1307 -2.4619 3.4324 41 1 1.0883 -4.1328 4.8000 42 1 2.2919 -2.8967 5.2377 43 1 0.5082 -1.5296 6.2847 44 1 -0.6958 -2.7654 5.8474 45 1 -0.2034 -3.5924 10.4501 46 1 -0.0873 -3.3739 -0.5318 47 1 0.7000 -4.7573 -2.4103 48 1 4.7390 -4.0891 -1.2074 49 1 3.9499 -2.7061 0.6705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540414069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:26 Heat of formation + Delta-G solvation = -9.449657 kcal Electronic energy + Delta-G solvation = -25404.615404 eV Core-core repulsion = 21970.227550 eV Total energy + Delta-G solvation = -3434.387853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.171 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59846 -38.07623 -36.54196 -36.11975 -33.74383 -32.09040 -31.33949 -30.56372 -28.37854 -27.55133 -27.25484 -26.16127 -23.92019 -23.07421 -22.03319 -20.89426 -20.02371 -18.95233 -17.44320 -16.73608 -16.03234 -15.74869 -15.31398 -15.12825 -14.83506 -14.40625 -14.26131 -14.02538 -13.77082 -13.65412 -13.57056 -13.30322 -12.96055 -12.63616 -12.36545 -12.34098 -12.10807 -11.96432 -11.84216 -11.64769 -11.60979 -11.46819 -11.20070 -11.03398 -10.98581 -10.85758 -10.74559 -10.72479 -10.60154 -9.96017 -9.72119 -9.60278 -9.16985 -9.15199 -8.64572 -8.52755 -8.23133 -6.02989 -4.00724 0.96750 1.10473 1.94251 3.30607 3.37826 3.40894 3.41102 4.22067 4.45733 4.46155 4.49036 4.61989 4.64088 4.68439 4.82386 5.05173 5.09844 5.15948 5.26609 5.30795 5.34757 5.40925 5.44541 5.48415 5.55959 5.56897 5.68233 5.70858 5.74011 5.75439 5.77453 5.79891 5.90985 6.02638 6.03923 6.07787 6.15504 6.17187 6.23458 6.36118 6.55303 6.56515 6.60211 6.92108 7.16297 7.34893 7.42359 7.52033 7.81457 8.56335 9.02849 9.59588 11.10643 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.002738 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.691722 B =10224.055387 C =11613.251031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.156 4.156 5 C -0.138 4.138 6 C 0.118 3.882 7 H 0.091 0.909 8 N -0.680 5.680 9 C 0.058 3.942 10 C -0.098 4.098 11 C -0.012 4.012 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.034 4.034 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.041 4.041 24 Cl -0.080 7.080 25 C -0.108 4.108 26 C -0.097 4.097 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.339 0.661 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.013 0.987 44 H 0.010 0.990 45 H 0.262 0.738 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 6.062 -27.840 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.199 4.199 4 C -0.213 4.213 5 C -0.177 4.177 6 C 0.008 3.992 7 H 0.109 0.891 8 N -0.309 5.309 9 C -0.070 4.070 10 C -0.136 4.136 11 C -0.050 4.050 12 C -0.556 4.556 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.035 4.035 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.068 4.068 24 Cl -0.052 7.052 25 C -0.126 4.126 26 C -0.116 4.116 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.031 0.969 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.943 5.379 -27.858 28.646 hybrid contribution -0.297 1.439 0.230 1.487 sum 3.647 6.818 -27.629 28.690 Atomic orbital electron populations 1.21983 0.94712 1.01827 1.01760 1.20439 0.95588 0.95143 0.95159 1.21893 1.00891 0.95483 1.01595 1.22432 1.01414 1.01037 0.96387 1.22473 1.00683 0.96449 0.98142 1.20690 1.00412 0.89808 0.88266 0.89053 1.60613 1.07846 1.60842 1.01619 1.22183 0.96710 0.96929 0.91211 1.21424 1.00088 0.99732 0.92366 1.19536 0.94808 0.96477 0.94206 1.21153 1.20575 1.21299 0.92620 0.91028 1.25047 0.97005 0.95993 0.95562 1.69920 1.42041 1.41701 1.00729 0.86770 0.82619 0.82606 0.77214 1.20307 1.21451 1.19102 1.19800 0.93205 0.95792 0.94667 1.20934 0.99832 0.97138 0.94350 1.20973 0.93635 0.99378 0.98833 1.20855 0.94146 0.99012 0.92788 1.98362 1.89944 1.69535 1.47317 1.20988 0.99410 0.97621 0.94615 1.20870 0.95472 0.98306 0.96922 0.92574 0.92791 0.92332 0.92815 0.92797 0.92741 0.90922 0.93523 0.92565 0.91258 0.91498 0.84235 0.95588 0.91524 0.91964 0.93029 0.96909 0.97124 0.92782 0.85308 0.85218 0.85272 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.68 37.16 0.29 -0.91 16 2 C -0.06 -0.52 0.80 -154.50 -0.12 -0.64 16 3 C -0.14 -1.12 8.40 37.16 0.31 -0.81 16 4 C -0.16 -1.29 7.07 37.16 0.26 -1.02 16 5 C -0.14 -1.27 3.82 -26.73 -0.10 -1.37 16 6 C 0.12 1.21 1.92 -68.87 -0.13 1.08 16 7 H 0.09 0.97 5.49 -51.93 -0.29 0.68 16 8 N -0.68 -8.64 6.11 -107.96 -0.66 -9.30 16 9 C 0.06 0.88 5.49 -3.83 -0.02 0.86 16 10 C -0.10 -1.90 5.46 -26.73 -0.15 -2.05 16 11 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 12 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 13 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 16 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 20 C -0.03 -0.33 2.74 -104.62 -0.29 -0.61 16 21 C -0.10 -0.96 7.61 -39.59 -0.30 -1.26 16 22 C -0.11 -1.00 9.81 -39.55 -0.39 -1.39 16 23 C -0.04 -0.40 6.32 -39.50 -0.25 -0.65 16 24 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 25 C -0.11 -0.99 9.83 -39.55 -0.39 -1.38 16 26 C -0.10 -0.90 7.25 -39.59 -0.29 -1.19 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.62 4.05 -51.92 -0.21 0.41 16 34 H 0.05 0.37 8.03 -51.93 -0.42 -0.04 16 35 H 0.06 0.48 6.51 -51.94 -0.34 0.14 16 36 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 37 H 0.07 0.58 6.87 -51.93 -0.36 0.23 16 38 H 0.34 4.05 8.57 -39.29 -0.34 3.72 16 39 H 0.03 0.38 7.32 -51.93 -0.38 0.00 16 40 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 44 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.13 1.04 7.95 -52.48 -0.42 0.62 16 47 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 49 H 0.13 1.05 7.32 -52.49 -0.38 0.67 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -30.33 388.62 -10.72 -41.05 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.41 Total: 0.05 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -2.11 Total: -25.16 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.11 Total: -36.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.33 -10.72 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540414069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.605 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds