Wall clock time and date at job start Tue Mar 31 2020 13:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46880 * 2 1 4 4 H 1.08990 * 109.47065 * 302.93541 * 3 2 1 5 5 C 1.53001 * 109.46906 * 182.93055 * 3 2 1 6 6 C 1.50704 * 109.46873 * 174.99875 * 5 3 2 7 7 C 1.38248 * 119.98547 * 269.72939 * 6 5 3 8 8 C 1.38216 * 120.00786 * 179.72764 * 7 6 5 9 9 C 1.38349 * 119.98884 * 0.54910 * 8 7 6 10 10 Cl 1.73598 * 120.01506 * 179.70493 * 9 8 7 11 11 C 1.38356 * 119.97220 * 359.72486 * 9 8 7 12 12 C 1.38210 * 119.98828 * 359.97438 * 11 9 8 13 13 N 1.46897 * 109.47192 * 62.93442 * 3 2 1 14 14 C 1.46904 * 110.99961 * 54.56230 * 13 3 2 15 15 C 1.52999 * 109.47036 * 178.82013 * 14 13 3 16 16 C 1.53003 * 109.47455 * 299.99963 * 15 14 13 17 17 C 1.52998 * 109.47252 * 60.00263 * 15 14 13 18 18 C 1.53006 * 109.47256 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47138 * 180.02562 * 18 15 14 20 20 H 1.07995 * 120.00283 * 359.97438 * 19 18 15 21 21 C 1.37884 * 119.99962 * 180.02562 * 19 18 15 22 22 N 1.31510 * 120.00009 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99804 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46605 * 90.00294 * 23 21 19 25 25 H 1.48495 * 109.47197 * 210.00415 * 23 21 19 26 26 H 1.48498 * 109.47149 * 330.00575 * 23 21 19 27 27 H 1.09001 * 109.47721 * 294.24421 * 1 2 3 28 28 H 1.08994 * 109.47103 * 54.25162 * 1 2 3 29 29 H 1.09007 * 109.46913 * 174.24657 * 1 2 3 30 30 H 1.08994 * 109.47446 * 239.99456 * 2 1 3 31 31 H 1.09008 * 109.47018 * 119.99776 * 2 1 3 32 32 H 1.08999 * 109.47739 * 295.00257 * 5 3 2 33 33 H 1.09007 * 109.46923 * 55.00398 * 5 3 2 34 34 H 1.08001 * 119.99210 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.00123 * 180.26959 * 8 7 6 36 36 H 1.08000 * 120.00570 * 179.97438 * 11 9 8 37 37 H 1.08002 * 119.99510 * 179.97438 * 12 11 9 38 38 H 1.00901 * 111.00113 * 290.61540 * 13 3 2 39 39 H 1.08993 * 109.47434 * 298.82052 * 14 13 3 40 40 H 1.08999 * 109.47099 * 58.82190 * 14 13 3 41 41 H 1.09004 * 109.46742 * 60.00283 * 16 15 14 42 42 H 1.08993 * 109.47442 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47142 * 300.00106 * 16 15 14 44 44 H 1.09005 * 109.47262 * 59.99631 * 17 15 14 45 45 H 1.09003 * 109.47374 * 180.02562 * 17 15 14 46 46 H 1.09004 * 109.47233 * 299.99893 * 17 15 14 47 47 H 1.09005 * 109.46786 * 300.00080 * 18 15 14 48 48 H 1.08999 * 109.47102 * 60.00041 * 18 15 14 49 49 H 0.97003 * 120.00127 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6343 1.9712 -0.8624 5 6 3.5682 1.4431 -0.0738 6 6 4.0645 2.8607 -0.1975 7 6 4.2398 3.4247 -1.4475 8 6 4.6896 4.7267 -1.5615 9 6 4.9752 5.4616 -0.4247 10 17 5.5475 7.0944 -0.5673 11 6 4.8049 4.8947 0.8258 12 6 4.3491 3.5948 0.9387 13 7 1.6090 2.1142 1.2333 14 6 2.0291 1.3567 2.4197 15 6 1.5890 2.1007 3.6821 16 6 2.2343 3.4877 3.7078 17 6 0.0660 2.2467 3.6832 18 6 2.0271 1.3120 4.9179 19 6 1.5930 2.0446 6.1612 20 1 1.0586 2.9793 6.0784 21 6 1.8792 1.5219 7.4046 22 7 1.4999 2.1609 8.4897 23 14 2.8042 -0.0946 7.5479 24 1 4.2640 0.1734 7.5991 25 1 2.3859 -0.7961 8.7881 26 1 2.4983 -0.9461 6.3704 27 1 -0.3634 0.4220 0.9370 28 1 -0.3633 0.6004 -0.8340 29 1 -0.3633 -1.0226 -0.1030 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9759 0.9932 0.8314 33 1 3.8902 0.8683 -0.9421 34 1 4.0215 2.8492 -2.3349 35 1 4.8224 5.1686 -2.5380 36 1 5.0281 5.4678 1.7136 37 1 4.2166 3.1520 1.9148 38 1 0.6111 2.2632 1.2342 39 1 1.5694 0.3686 2.4015 40 1 3.1141 1.2526 2.4190 41 1 1.9225 4.0498 2.8275 42 1 1.9204 4.0180 4.6069 43 1 3.3193 3.3837 3.7071 44 1 -0.3938 1.2585 3.6649 45 1 -0.2476 2.7772 4.5823 46 1 -0.2458 2.8088 2.8029 47 1 1.5676 0.3237 4.8998 48 1 3.1121 1.2084 4.9169 49 1 1.7015 1.7934 9.3645 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595053826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:55 Heat of formation + Delta-G solvation = -23.805843 kcal Electronic energy + Delta-G solvation = -26104.753023 eV Core-core repulsion = 22669.742639 eV Total energy + Delta-G solvation = -3435.010384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64711 -39.43192 -37.58857 -37.09827 -34.48892 -33.09659 -32.11719 -31.82025 -29.66904 -28.61855 -27.90194 -26.81962 -24.80184 -24.05901 -23.62067 -22.07395 -20.62880 -19.40948 -18.85729 -17.92214 -17.17198 -16.43370 -16.17520 -16.11208 -16.05273 -15.30007 -15.08271 -15.04082 -14.61872 -14.41163 -14.29762 -14.21086 -14.01949 -13.98294 -13.49518 -13.22278 -12.94081 -12.80226 -12.74849 -12.62753 -12.45187 -12.28903 -12.19119 -12.11968 -12.05008 -11.75632 -11.67582 -11.65779 -11.63282 -11.48822 -11.17579 -10.90518 -10.75739 -10.68617 -9.83672 -9.35715 -9.04186 -8.20534 -6.20444 0.32757 0.50641 1.26641 1.35774 1.37221 1.47936 2.39931 2.81146 3.14844 3.41026 3.85829 3.95791 4.07951 4.11067 4.18835 4.25984 4.28261 4.39148 4.40309 4.45506 4.55577 4.67859 4.76365 4.79655 4.83276 4.88134 4.93787 4.96682 5.02958 5.04626 5.10864 5.17293 5.19451 5.21166 5.23825 5.35692 5.39531 5.41291 5.44649 5.48536 5.52707 5.58147 5.66814 5.79891 5.82607 5.86892 6.03652 6.30010 6.45889 6.67371 6.87575 7.42049 8.95871 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011132 B = 0.003712 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.722850 B = 7540.323856 C = 9152.546021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.157 4.157 3 C 0.098 3.902 4 H 0.090 0.910 5 C -0.075 4.075 6 C -0.057 4.057 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.053 4.053 10 Cl -0.085 7.085 11 C -0.125 4.125 12 C -0.090 4.090 13 N -0.675 5.675 14 C 0.078 3.922 15 C -0.046 4.046 16 C -0.105 4.105 17 C -0.122 4.122 18 C -0.001 4.001 19 C -0.501 4.501 20 H 0.042 0.958 21 C 0.001 3.999 22 N -0.956 5.956 23 Si 0.939 3.061 24 H -0.271 1.271 25 H -0.290 1.290 26 H -0.248 1.248 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.342 0.658 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.064 0.936 47 H 0.011 0.989 48 H 0.010 0.990 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -1.315 -26.119 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C -0.012 4.012 4 H 0.109 0.891 5 C -0.113 4.113 6 C -0.058 4.058 7 C -0.125 4.125 8 C -0.135 4.135 9 C -0.079 4.079 10 Cl -0.057 7.057 11 C -0.144 4.144 12 C -0.108 4.108 13 N -0.307 5.307 14 C -0.051 4.051 15 C -0.046 4.046 16 C -0.162 4.162 17 C -0.179 4.179 18 C -0.039 4.039 19 C -0.540 4.540 20 H 0.060 0.940 21 C -0.195 4.195 22 N -0.598 5.598 23 Si 0.764 3.236 24 H -0.197 1.197 25 H -0.216 1.216 26 H -0.171 1.171 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.083 0.917 47 H 0.029 0.971 48 H 0.028 0.972 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.221 -0.747 -25.949 26.480 hybrid contribution -0.293 -0.854 1.334 1.611 sum 4.928 -1.601 -24.615 25.155 Atomic orbital electron populations 1.21755 0.95683 1.01966 1.01593 1.22226 0.96385 0.98278 1.02711 1.21598 0.94042 0.92521 0.93018 0.89145 1.20764 0.94962 0.92159 1.03407 1.19930 0.96508 0.96691 0.92622 1.21245 0.99054 0.94338 0.97872 1.21193 1.00066 0.94695 0.97572 1.21022 1.04732 0.86570 0.95604 1.98351 1.87774 1.21178 1.98366 1.21126 1.00830 0.96247 0.96179 1.21132 0.96990 0.93216 0.99492 1.60624 1.20248 1.48984 1.00826 1.21895 0.99885 0.94290 0.89008 1.20332 0.95274 0.95689 0.93333 1.21524 0.98865 0.96074 0.99729 1.21669 0.95387 1.00395 1.00466 1.19581 0.95430 0.95319 0.93583 1.21450 1.34624 1.07306 0.90585 0.93956 1.25917 0.96998 1.00842 0.95711 1.70070 1.49855 1.41525 0.98344 0.85823 0.79207 0.80619 0.77959 1.19669 1.21642 1.17144 0.93872 0.91713 0.92572 0.90173 0.92580 0.91553 0.88507 0.82807 0.83762 0.85900 0.85907 0.83741 0.95160 0.91521 0.91640 0.96034 0.94216 0.93900 0.95047 0.91676 0.97108 0.97155 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.50 71.98 0.68 -1.71 16 2 C -0.16 -2.41 4.99 30.59 0.15 -2.26 16 3 C 0.10 1.59 2.54 44.92 0.11 1.71 16 4 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.08 -1.21 4.73 29.85 0.14 -1.07 16 6 C -0.06 -1.08 4.95 -19.86 -0.10 -1.18 16 7 C -0.11 -1.71 9.70 22.27 0.22 -1.50 16 8 C -0.12 -2.09 9.83 22.29 0.22 -1.87 16 9 C -0.05 -1.16 6.32 22.32 0.14 -1.02 16 10 Cl -0.09 -1.83 28.96 -2.72 -0.08 -1.90 16 11 C -0.13 -3.00 9.83 22.29 0.22 -2.79 16 12 C -0.09 -2.11 9.31 22.26 0.21 -1.90 16 13 N -0.68 -14.51 4.87 -491.59 -2.39 -16.90 16 14 C 0.08 2.12 3.75 86.30 0.32 2.44 16 15 C -0.05 -1.63 0.60 -52.18 -0.03 -1.66 16 16 C -0.10 -3.81 7.67 71.98 0.55 -3.26 16 17 C -0.12 -4.25 7.89 71.98 0.57 -3.69 16 18 C 0.00 -0.06 3.11 29.85 0.09 0.03 16 19 C -0.50 -27.99 8.20 25.60 0.21 -27.78 16 20 H 0.04 2.61 5.92 -2.91 -0.02 2.59 16 21 C 0.00 0.05 5.47 84.66 0.46 0.51 16 22 N -0.96 -60.28 13.96 21.45 0.30 -59.98 16 23 Si 0.94 44.53 27.47 68.60 1.88 46.42 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 27 H 0.04 0.80 7.26 -2.39 -0.02 0.78 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.05 6.19 -2.38 -0.01 1.03 16 32 H 0.07 1.25 6.23 -2.39 -0.01 1.23 16 33 H 0.10 1.10 8.08 -2.38 -0.02 1.08 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.12 3.20 5.72 -2.91 -0.02 3.18 16 38 H 0.34 7.33 5.71 -89.69 -0.51 6.82 16 39 H 0.03 0.83 6.22 -2.39 -0.01 0.81 16 40 H 0.07 1.83 5.75 -2.39 -0.01 1.81 16 41 H 0.06 2.12 7.60 -2.39 -0.02 2.10 16 42 H 0.02 0.91 6.62 -2.39 -0.02 0.90 16 43 H 0.04 1.40 6.88 -2.39 -0.02 1.38 16 44 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 46 H 0.06 1.87 6.60 -2.39 -0.02 1.85 16 47 H 0.01 0.48 7.20 -2.38 -0.02 0.47 16 48 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 49 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -64.23 383.78 4.26 -59.97 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.37 Total: 19.38 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 4.17 Total: -46.98 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.09 Total: -76.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.90 kcal Total: -64.23 4.26 -59.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595053826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.165 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds