Wall clock time and date at job start Tue Mar 31 2020 13:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29025 * 124.91610 * 2 1 4 4 C 1.31780 * 117.12532 * 180.23174 * 3 2 1 5 5 C 1.50701 * 122.75221 * 179.75085 * 4 3 2 6 6 N 1.46898 * 109.47047 * 274.70643 * 5 4 3 7 7 C 1.46953 * 111.00067 * 170.00200 * 6 5 4 8 8 C 1.53047 * 109.36328 * 183.18795 * 7 6 5 9 9 N 1.46959 * 109.36458 * 301.59265 * 8 7 6 10 10 C 1.46898 * 110.99907 * 183.18963 * 9 8 7 11 11 C 1.53004 * 109.47015 * 75.78060 * 10 9 8 12 12 H 1.09000 * 109.47054 * 305.23592 * 11 10 9 13 13 C 1.52994 * 109.47385 * 65.23646 * 11 10 9 14 14 C 1.53002 * 109.47036 * 185.23525 * 11 10 9 15 15 C 1.50693 * 109.47082 * 174.99737 * 14 11 10 16 16 H 1.07997 * 120.00234 * 0.02562 * 15 14 11 17 17 C 1.37882 * 120.00213 * 180.02562 * 15 14 11 18 18 N 1.31509 * 120.00444 * 179.72534 * 17 15 14 19 19 Si 1.86809 * 119.99737 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46942 * 269.72727 * 19 17 15 21 21 H 1.48503 * 109.46921 * 29.72719 * 19 17 15 22 22 H 1.48495 * 109.47037 * 149.72490 * 19 17 15 23 23 C 1.46953 * 110.87598 * 59.32479 * 9 8 7 24 24 C 1.46964 * 110.99551 * 293.79537 * 6 5 4 25 25 C 1.33641 * 114.49806 * 359.47452 * 4 3 2 26 26 S 1.70976 * 124.91553 * 179.69183 * 2 1 3 27 27 H 1.09000 * 109.47219 * 180.33065 * 1 2 3 28 28 H 1.09002 * 109.47277 * 300.33374 * 1 2 3 29 29 H 1.09006 * 109.47296 * 60.32994 * 1 2 3 30 30 H 1.09003 * 109.46875 * 154.70269 * 5 4 3 31 31 H 1.09003 * 109.46980 * 34.70687 * 5 4 3 32 32 H 1.09002 * 109.49236 * 63.21438 * 7 6 5 33 33 H 1.09000 * 109.48772 * 303.15334 * 7 6 5 34 34 H 1.09003 * 109.48821 * 181.63142 * 8 7 6 35 35 H 1.08998 * 109.51010 * 61.57784 * 8 7 6 36 36 H 1.08997 * 109.47424 * 315.77627 * 10 9 8 37 37 H 1.09004 * 109.47085 * 195.77920 * 10 9 8 38 38 H 1.09003 * 109.47141 * 305.01331 * 13 11 10 39 39 H 1.09004 * 109.47397 * 65.00937 * 13 11 10 40 40 H 1.09002 * 109.47603 * 185.00665 * 13 11 10 41 41 H 1.09009 * 109.47007 * 54.99939 * 14 11 10 42 42 H 1.09004 * 109.47179 * 295.00229 * 14 11 10 43 43 H 0.97003 * 120.00419 * 180.27141 * 18 17 15 44 44 H 1.09002 * 109.49236 * 60.64954 * 23 9 8 45 45 H 1.09004 * 109.49014 * 180.71498 * 23 9 8 46 46 H 1.08993 * 109.48952 * 296.78029 * 24 6 5 47 47 H 1.09004 * 109.48556 * 56.82713 * 24 6 5 48 48 H 1.07998 * 126.03815 * 180.27604 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0047 5 6 4.5307 2.0246 -0.0109 6 7 4.7572 2.4678 -1.3929 7 6 5.5159 3.7259 -1.4249 8 6 5.6616 4.1939 -2.8747 9 7 6.3417 3.1522 -3.6571 10 6 6.5682 3.5954 -5.0391 11 6 7.7317 4.5886 -5.0720 12 1 7.5324 5.4047 -4.3775 13 6 9.0225 3.8757 -4.6643 14 6 7.8839 5.1490 -6.4875 15 6 8.9477 6.2163 -6.4935 16 1 9.4640 6.4693 -5.5792 17 6 9.2621 6.8700 -7.6661 18 7 10.1866 7.8052 -7.6702 19 14 8.3696 6.4319 -9.2477 20 1 9.1079 5.3516 -9.9497 21 1 6.9961 5.9662 -8.9283 22 1 8.2952 7.6298 -10.1221 23 6 5.5830 1.8941 -3.6251 24 6 5.4374 1.4260 -2.1752 25 6 3.9354 -0.4006 0.0022 26 16 2.4856 -1.4020 0.0075 27 1 -0.3634 -1.0276 0.0059 28 1 -0.3634 0.5190 0.8870 29 1 -0.3634 0.5087 -0.8930 30 1 5.4746 1.6976 0.4253 31 1 4.1271 2.8510 0.5742 32 1 6.5040 3.5658 -0.9933 33 1 4.9860 4.4848 -0.8493 34 1 6.2489 5.1117 -2.9033 35 1 4.6746 4.3805 -3.2979 36 1 5.6675 4.0782 -5.4182 37 1 6.8082 2.7339 -5.6623 38 1 8.8839 3.4003 -3.6932 39 1 9.2695 3.1177 -5.4078 40 1 9.8339 4.6008 -4.6015 41 1 6.9361 5.5789 -6.8120 42 1 8.1705 4.3465 -7.1673 43 1 10.4050 8.2678 -8.4944 44 1 4.5949 2.0542 -4.0567 45 1 6.1129 1.1351 -4.2007 46 1 6.4245 1.2398 -1.7522 47 1 4.8502 0.5081 -2.1463 48 1 4.9545 -0.7581 0.0042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602435468.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:27 Heat of formation + Delta-G solvation = 46.571753 kcal Electronic energy + Delta-G solvation = -25026.828986 eV Core-core repulsion = 21629.206860 eV Total energy + Delta-G solvation = -3397.622125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41570 -39.11167 -36.48870 -34.27123 -32.69648 -31.92458 -30.90557 -29.23981 -28.25233 -27.28921 -25.78105 -24.09077 -23.54928 -22.61146 -21.79464 -20.01574 -19.72334 -18.89706 -17.90502 -16.79952 -16.34729 -15.78307 -15.33904 -15.04421 -14.95216 -14.62380 -14.41527 -14.34385 -13.98569 -13.79506 -13.53586 -13.27935 -12.97452 -12.75263 -12.61532 -12.40525 -12.27647 -12.08788 -11.77988 -11.60670 -11.34824 -11.26089 -10.95859 -10.90303 -10.80403 -10.62332 -10.42147 -9.91174 -9.71509 -9.69330 -9.67085 -9.33363 -9.08601 -9.02618 -8.49083 -8.48534 -8.04094 -5.98869 -3.95389 0.37769 1.03237 1.39079 2.42951 3.33560 3.40948 3.44876 3.69066 3.86460 4.09732 4.49653 4.52089 4.79018 4.85646 4.89412 4.93311 5.06487 5.07288 5.14651 5.26273 5.29496 5.34901 5.43206 5.43912 5.51243 5.53270 5.66206 5.72769 5.82434 5.85173 5.91165 6.02419 6.08994 6.09867 6.30607 6.45827 6.65219 6.79807 6.87554 6.90393 7.08128 7.16827 7.30126 7.32047 7.41335 7.49275 7.54715 7.86641 8.61271 9.07285 9.64271 11.14566 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029134 B = 0.002139 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.857721 B =13089.770546 C =13286.873918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.457 5.457 4 C 0.087 3.913 5 C 0.128 3.872 6 N -0.532 5.532 7 C 0.061 3.939 8 C 0.057 3.943 9 N -0.535 5.535 10 C 0.059 3.941 11 C -0.069 4.069 12 H 0.061 0.939 13 C -0.123 4.123 14 C -0.010 4.010 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.266 1.266 22 H -0.289 1.289 23 C 0.058 3.942 24 C 0.057 3.943 25 C -0.259 4.259 26 S 0.109 5.891 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.261 0.739 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 -19.813 18.384 32.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.229 4.229 3 N -0.172 5.172 4 C -0.045 4.045 5 C -0.002 4.002 6 N -0.258 5.258 7 C -0.067 4.067 8 C -0.071 4.071 9 N -0.259 5.259 10 C -0.069 4.069 11 C -0.088 4.088 12 H 0.079 0.921 13 C -0.180 4.180 14 C -0.048 4.048 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.215 1.215 23 C -0.070 4.070 24 C -0.071 4.071 25 C -0.399 4.399 26 S 0.363 5.637 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -18.112 -20.253 18.275 32.744 hybrid contribution 0.283 0.487 -1.052 1.193 sum -17.829 -19.765 17.224 31.705 Atomic orbital electron populations 1.20429 0.85172 1.03425 1.04598 1.27094 1.01814 0.90792 1.03205 1.66035 1.04481 1.31291 1.15428 1.20082 0.90086 0.93641 1.00718 1.20541 0.94520 0.94450 0.90678 1.62071 1.48772 1.04245 1.10669 1.22174 0.96223 0.90846 0.97410 1.22174 0.97371 0.95304 0.92297 1.62174 1.46792 1.03250 1.13727 1.22332 0.98421 0.99009 0.87094 1.20976 0.93118 0.95567 0.99104 0.92087 1.21574 0.97567 0.99521 0.99345 1.19636 0.96992 0.96060 0.92096 1.21127 1.19090 1.18051 0.96546 0.90854 1.25037 0.94880 0.94849 0.98905 1.69913 1.31991 1.24988 1.27619 0.86809 0.80989 0.77864 0.83786 1.20417 1.19121 1.21523 1.22113 0.96550 0.92823 0.95545 1.22206 0.96769 0.94292 0.93811 1.26852 1.03126 0.95884 1.13993 1.83969 0.98048 1.13091 1.68583 0.90334 0.89381 0.89278 0.92947 0.88975 0.93707 0.90285 0.89463 0.94283 0.95083 0.91546 0.93660 0.94354 0.92539 0.97003 0.97167 0.92877 0.94541 0.90534 0.93917 0.90871 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.47 36.01 0.38 -0.04 16 2 C 0.05 0.43 7.39 -13.46 -0.10 0.33 16 3 N -0.46 -5.17 10.53 -8.06 -0.08 -5.26 16 4 C 0.09 0.90 5.58 -84.22 -0.47 0.43 16 5 C 0.13 1.28 5.41 -4.98 -0.03 1.25 16 6 N -0.53 -6.16 4.70 -235.91 -1.11 -7.27 16 7 C 0.06 0.71 5.61 -3.77 -0.02 0.69 16 8 C 0.06 0.79 5.43 -3.77 -0.02 0.76 16 9 N -0.53 -7.83 4.02 -234.46 -0.94 -8.77 16 10 C 0.06 0.98 4.39 -3.82 -0.02 0.97 16 11 C -0.07 -1.37 2.39 -90.62 -0.22 -1.59 16 12 H 0.06 1.26 6.73 -51.93 -0.35 0.91 16 13 C -0.12 -2.37 8.87 37.15 0.33 -2.04 16 14 C -0.01 -0.24 3.51 -27.89 -0.10 -0.34 16 15 C -0.51 -14.53 9.02 -34.44 -0.31 -14.85 16 16 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 19 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C 0.06 0.75 5.56 -3.77 -0.02 0.73 16 24 C 0.06 0.65 5.36 -3.76 -0.02 0.63 16 25 C -0.26 -2.20 9.80 29.12 0.29 -1.92 16 26 S 0.11 0.80 23.17 -107.50 -2.49 -1.69 16 27 H 0.08 0.27 8.12 -51.93 -0.42 -0.16 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.09 1.27 6.71 -51.93 -0.35 0.92 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 37 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 38 H 0.04 0.79 7.63 -51.93 -0.40 0.39 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.20 7.10 -51.93 -0.37 0.83 16 41 H 0.01 0.29 7.20 -51.92 -0.37 -0.09 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.78 6.29 -51.93 -0.33 0.45 16 48 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -32.22 384.90 -11.55 -43.77 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.40 Total: -3.37 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.43 Total: -13.19 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -1.36 Total: -48.72 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.22 -11.55 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602435468.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.343 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds