Wall clock time and date at job start Tue Mar 31 2020 14:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39843 * 110.99783 * 236.04559 * 2 1 3 5 5 C 1.38833 * 120.08042 * 59.72800 * 4 2 1 6 6 C 1.38155 * 119.95225 * 179.76752 * 5 4 2 7 7 C 1.38275 * 120.10705 * 0.48601 * 6 5 4 8 8 C 1.50706 * 119.91499 * 179.76770 * 7 6 5 9 9 N 1.46502 * 109.46982 * 270.01741 * 8 7 6 10 10 C 1.34769 * 119.99889 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99898 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00259 * 180.02562 * 10 9 8 13 13 H 1.08997 * 109.46971 * 39.99937 * 12 10 9 14 14 N 1.46899 * 109.47364 * 160.00262 * 12 10 9 15 15 C 1.53001 * 109.47151 * 280.00527 * 12 10 9 16 16 C 1.52999 * 109.46938 * 174.99462 * 15 12 10 17 17 C 1.50706 * 109.47141 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99676 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00297 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99566 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00118 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47380 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47598 * 119.99517 * 21 19 17 24 24 H 1.48506 * 109.47036 * 239.99606 * 21 19 17 25 25 C 1.38284 * 120.16519 * 359.78699 * 7 6 5 26 26 C 1.38282 * 120.04715 * 359.96121 * 25 7 6 27 27 F 1.35102 * 120.05551 * 180.02562 * 26 25 7 28 28 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 29 29 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 30 30 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 31 31 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 32 32 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 34 34 H 1.08001 * 120.02206 * 359.97438 * 5 4 2 35 35 H 1.07994 * 119.94429 * 180.24964 * 6 5 4 36 36 H 1.08997 * 109.47136 * 30.02199 * 8 7 6 37 37 H 1.09001 * 109.46631 * 150.01980 * 8 7 6 38 38 H 0.97000 * 119.99535 * 0.02562 * 9 8 7 39 39 H 1.00896 * 111.00220 * 296.04901 * 14 12 10 40 40 H 1.00899 * 110.99832 * 60.00496 * 14 12 10 41 41 H 1.09001 * 109.47459 * 294.99705 * 15 12 10 42 42 H 1.09003 * 109.47226 * 54.99531 * 15 12 10 43 43 H 1.08996 * 109.47567 * 299.99704 * 16 15 12 44 44 H 1.08996 * 109.47009 * 60.00345 * 16 15 12 45 45 H 0.97000 * 119.99670 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.97560 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9701 -0.7292 -1.0829 5 6 1.6541 -0.3526 -2.3813 6 6 2.1545 -1.0721 -3.4494 7 6 2.9615 -2.1727 -3.2271 8 6 3.5008 -2.9574 -4.3952 9 7 2.5587 -4.0240 -4.7435 10 6 2.8335 -4.8585 -5.7655 11 8 3.8608 -4.7267 -6.3966 12 6 1.8643 -5.9553 -6.1243 13 1 0.8444 -5.5786 -6.0465 14 7 2.1178 -6.4020 -7.5005 15 6 2.0477 -7.1322 -5.1640 16 6 0.9823 -8.1929 -5.4480 17 6 1.1634 -9.3525 -4.5026 18 1 1.9586 -9.3345 -3.7720 19 6 0.3139 -10.4364 -4.5703 20 7 -0.6548 -10.4580 -5.4596 21 14 0.5379 -11.8733 -3.3980 22 1 1.6907 -11.6054 -2.5010 23 1 -0.6927 -12.0455 -2.5850 24 1 0.7943 -13.1118 -4.1763 25 6 3.2747 -2.5553 -1.9356 26 6 2.7816 -1.8368 -0.8619 27 9 3.0879 -2.2102 0.3999 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.6461 1.8947 0.8901 32 1 3.0851 1.3422 0.0005 33 1 1.6460 1.8948 -0.8900 34 1 1.0202 0.5041 -2.5563 35 1 1.9118 -0.7766 -4.4594 36 1 3.6305 -2.2937 -5.2500 37 1 4.4620 -3.3952 -4.1260 38 1 1.7370 -4.1290 -4.2390 39 1 1.9405 -5.6595 -8.1602 40 1 3.0575 -6.7560 -7.5984 41 1 3.0381 -7.5652 -5.3049 42 1 1.9471 -6.7821 -4.1367 43 1 -0.0081 -7.7600 -5.3070 44 1 1.0829 -8.5431 -6.4752 45 1 -1.2526 -11.2204 -5.5070 46 1 3.9049 -3.4156 -1.7656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827902009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:46 Heat of formation + Delta-G solvation = -82.237046 kcal Electronic energy + Delta-G solvation = -26568.791775 eV Core-core repulsion = 22599.370905 eV Total energy + Delta-G solvation = -3969.420870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.83402 -41.25033 -40.64247 -38.17830 -36.79554 -35.62398 -34.79960 -31.93600 -31.80199 -31.61679 -28.56804 -28.56192 -27.33970 -25.42815 -24.30267 -23.78113 -22.33693 -21.91527 -21.17455 -18.93613 -18.36052 -17.98275 -17.78247 -17.54704 -17.20686 -16.87783 -16.72713 -16.42499 -15.93962 -15.69855 -15.47932 -15.33570 -15.15405 -15.06023 -14.67265 -14.30732 -14.26509 -13.82344 -13.52576 -13.45125 -13.35706 -13.22968 -12.94136 -12.87822 -12.82192 -12.68925 -12.50820 -12.22617 -12.17664 -11.76178 -11.64860 -11.24259 -10.99078 -10.49006 -10.18531 -10.05621 -9.76677 -9.61268 -9.49977 -8.13675 -6.23385 -0.12263 0.10959 1.41327 1.42270 1.51427 1.55034 2.07764 2.44601 2.60515 2.70298 3.17949 3.19551 3.53144 3.60717 3.69259 3.89210 4.02362 4.12156 4.14996 4.19146 4.33995 4.35023 4.38978 4.49184 4.57113 4.60691 4.67070 4.79985 4.87968 4.92289 4.94523 4.96494 5.01187 5.15682 5.26904 5.32897 5.36256 5.58428 5.59580 5.82376 5.86130 6.00074 6.12307 6.20665 6.31516 6.44101 6.56390 6.95730 7.12725 7.44673 8.97715 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.002599 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.718025 B =10768.885867 C =12204.584783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.531 5.531 3 C 0.029 3.971 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.091 4.091 7 C -0.079 4.079 8 C 0.162 3.838 9 N -0.713 5.713 10 C 0.492 3.508 11 O -0.580 6.580 12 C 0.086 3.914 13 H 0.111 0.889 14 N -0.819 5.819 15 C -0.083 4.083 16 C 0.039 3.961 17 C -0.542 4.542 18 H 0.054 0.946 19 C 0.001 3.999 20 N -0.929 5.929 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.281 1.281 25 C -0.133 4.133 26 C 0.096 3.904 27 F -0.143 7.143 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.413 0.587 39 H 0.347 0.653 40 H 0.345 0.655 41 H 0.042 0.958 42 H 0.066 0.934 43 H -0.006 1.006 44 H 0.006 0.994 45 H 0.262 0.738 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 28.016 7.786 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.253 5.253 3 C -0.117 4.117 4 C -0.040 4.040 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.079 4.079 8 C 0.039 3.961 9 N -0.365 5.365 10 C 0.277 3.723 11 O -0.460 6.460 12 C -0.030 4.030 13 H 0.129 0.871 14 N -0.348 5.348 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.207 1.207 25 C -0.153 4.153 26 C 0.075 3.925 27 F -0.121 7.121 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.013 0.987 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.906 27.262 7.908 28.654 hybrid contribution 0.225 -0.098 0.357 0.433 sum 4.130 27.164 8.265 28.692 Atomic orbital electron populations 1.22523 0.84237 1.02766 1.02400 1.59547 1.09984 1.15553 1.40192 1.22508 1.00541 0.86157 1.02515 1.19015 0.98749 0.95174 0.91068 1.21692 1.00133 1.00865 0.91037 1.21273 0.95457 0.93789 1.00507 1.19609 0.98888 0.96763 0.92678 1.20198 0.92346 0.88505 0.95022 1.46119 1.24894 1.31705 1.33786 1.22324 0.87610 0.82890 0.79472 1.90648 1.28209 1.73514 1.53596 1.21630 0.98290 0.92080 0.90994 0.87114 1.58965 1.33562 1.39239 1.03074 1.21392 0.99558 0.94219 0.96932 1.18834 0.92799 0.92340 0.95880 1.21765 1.14165 1.03939 1.18107 0.92738 1.25885 0.95058 1.01330 0.97361 1.70107 1.18697 1.31644 1.36533 0.85508 0.78252 0.79025 0.78900 1.18900 1.20327 1.20650 1.21149 1.01948 1.00842 0.91354 1.17805 0.99668 0.95832 0.79150 1.91472 1.91515 1.90846 1.38295 0.92090 0.93434 0.89292 0.89389 0.91879 0.93478 0.82899 0.82816 0.89512 0.91159 0.75087 0.83929 0.84117 0.93896 0.91567 0.98715 0.97514 0.92945 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.34 127.69 1.19 1.52 16 2 N -0.53 -8.44 4.83 -744.80 -3.59 -12.04 16 3 C 0.03 0.32 9.33 127.69 1.19 1.51 16 4 C 0.06 0.95 4.73 38.21 0.18 1.13 16 5 C -0.12 -1.47 8.62 22.39 0.19 -1.28 16 6 C -0.09 -1.13 9.69 22.26 0.22 -0.91 16 7 C -0.08 -1.24 5.25 -19.84 -0.10 -1.35 16 8 C 0.16 2.97 5.79 85.63 0.50 3.46 16 9 N -0.71 -15.33 5.55 -466.78 -2.59 -17.92 16 10 C 0.49 14.07 7.07 87.66 0.62 14.69 16 11 O -0.58 -19.85 16.25 -3.04 -0.05 -19.90 16 12 C 0.09 2.73 3.15 44.17 0.14 2.86 16 13 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 14 N -0.82 -26.82 8.44 -171.80 -1.45 -28.27 16 15 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 16 C 0.04 1.99 4.86 29.85 0.15 2.14 16 17 C -0.54 -30.77 9.11 25.60 0.23 -30.53 16 18 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 19 C 0.00 0.08 5.46 84.65 0.46 0.54 16 20 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 21 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C -0.13 -2.49 9.67 22.29 0.22 -2.27 16 26 C 0.10 2.00 7.31 22.48 0.16 2.16 16 27 F -0.14 -3.59 17.08 44.97 0.77 -2.82 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.43 7.11 -2.39 -0.02 0.41 16 30 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.05 0.37 7.49 -2.39 -0.02 0.36 16 34 H 0.15 1.21 7.05 -2.91 -0.02 1.19 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 37 H 0.07 1.43 8.08 -2.39 -0.02 1.42 16 38 H 0.41 7.72 8.46 -92.71 -0.78 6.93 16 39 H 0.35 9.59 9.06 -89.70 -0.81 8.77 16 40 H 0.35 11.62 8.58 -89.69 -0.77 10.85 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.01 0.37 7.75 -2.39 -0.02 0.35 16 45 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 46 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -71.82 389.42 -0.47 -72.29 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -1.35 Total: 27.76 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.49 Total: -9.45 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -7.35 Total: -114.60 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.77 Total: -2.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.82 -0.47 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827902009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.947 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds