Wall clock time and date at job start Tue Mar 31 2020 13:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31483 * 119.81220 * 2 1 4 4 C 1.32746 * 121.72735 * 180.26968 * 3 2 1 5 5 N 1.38366 * 119.43299 * 179.75360 * 4 3 2 6 6 C 1.46646 * 110.99596 * 53.78680 * 5 4 3 7 7 C 1.50620 * 110.48831 * 183.99648 * 6 5 4 8 8 C 1.38734 * 118.43338 * 197.50220 * 7 6 5 9 9 C 1.38020 * 120.37644 * 180.44288 * 8 7 6 10 10 C 1.38258 * 119.87170 * 359.97438 * 9 8 7 11 11 C 1.38041 * 119.82632 * 359.92080 * 10 9 8 12 12 C 1.37834 * 121.84358 * 17.77436 * 7 6 5 13 13 C 1.50720 * 121.65609 * 359.23356 * 12 7 6 14 14 C 1.47161 * 110.99677 * 290.81297 * 5 4 3 15 15 H 1.09004 * 109.63438 * 74.94397 * 14 5 4 16 16 C 1.53001 * 109.63225 * 314.35566 * 14 5 4 17 17 N 1.46897 * 109.47001 * 63.80299 * 16 14 5 18 18 C 1.39713 * 121.13937 * 359.48001 * 4 3 2 19 19 C 1.36561 * 119.48925 * 0.24606 * 18 4 3 20 20 C 1.40753 * 119.81462 * 179.75494 * 2 1 3 21 21 C 1.41202 * 120.57129 * 359.96996 * 20 2 1 22 22 H 1.08002 * 120.00268 * 332.52113 * 21 20 2 23 23 C 1.39865 * 120.00179 * 152.52575 * 21 20 2 24 24 N 1.30904 * 119.99850 * 348.89767 * 23 21 20 25 25 Si 1.86799 * 120.00430 * 168.89600 * 23 21 20 26 26 H 1.48495 * 109.46852 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46774 * 119.99741 * 25 23 21 28 28 H 1.48494 * 109.47171 * 240.00034 * 25 23 21 29 29 H 1.09003 * 109.46670 * 273.09752 * 1 2 3 30 30 H 1.08996 * 109.47190 * 33.09432 * 1 2 3 31 31 H 1.09002 * 109.47204 * 153.10067 * 1 2 3 32 32 H 1.08996 * 109.25748 * 63.74799 * 6 5 4 33 33 H 1.08998 * 109.29489 * 304.27088 * 6 5 4 34 34 H 1.08003 * 119.81383 * 0.41020 * 8 7 6 35 35 H 1.07997 * 120.06334 * 179.97438 * 9 8 7 36 36 H 1.07999 * 120.08737 * 179.90115 * 10 9 8 37 37 H 1.08000 * 119.82659 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.38858 * 137.25313 * 13 12 7 39 39 H 1.09000 * 109.38987 * 257.05683 * 13 12 7 40 40 H 1.09002 * 109.47153 * 183.79894 * 16 14 5 41 41 H 1.08996 * 109.46761 * 303.79795 * 16 14 5 42 42 H 1.00901 * 111.00312 * 64.46842 * 17 16 14 43 43 H 1.00900 * 110.99758 * 188.42641 * 17 16 14 44 44 H 1.07994 * 120.25438 * 180.28102 * 18 4 3 45 45 H 1.07999 * 120.79277 * 179.97438 * 19 18 4 46 46 H 0.96998 * 120.00449 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1852 -0.0053 5 7 4.1267 2.4123 -0.0102 6 6 3.6565 3.2542 1.0946 7 6 4.2866 4.6203 1.0216 8 6 4.2613 5.4208 2.1544 9 6 4.8187 6.6832 2.1295 10 6 5.4064 7.1537 0.9699 11 6 5.4343 6.3577 -0.1576 12 6 4.8754 5.0888 -0.1333 13 6 4.9369 4.2521 -1.3854 14 6 3.9323 3.1030 -1.2951 15 1 2.9179 3.4984 -1.3485 16 6 4.1675 2.1230 -2.4462 17 7 3.1583 1.0568 -2.3955 18 6 4.2495 0.0142 -0.0003 19 6 3.6199 -1.1976 0.0051 20 6 2.2069 -1.2212 0.0052 21 6 1.5091 -2.4488 0.0111 22 1 0.5210 -2.5063 0.4434 23 6 2.0975 -3.5904 -0.5428 24 7 3.1902 -3.4831 -1.2556 25 14 1.3242 -5.2680 -0.2654 26 1 0.1042 -5.1189 0.5678 27 1 0.9591 -5.8671 -1.5742 28 1 2.2943 -6.1513 0.4300 29 1 -0.3633 0.0555 1.0262 30 1 -0.3633 0.8609 -0.5611 31 1 -0.3634 -0.9165 -0.4649 32 1 3.9224 2.7855 2.0420 33 1 2.5727 3.3542 1.0352 34 1 3.8024 5.0543 3.0608 35 1 4.7958 7.3022 3.0141 36 1 5.8422 8.1416 0.9460 37 1 5.8930 6.7254 -1.0635 38 1 4.6988 4.8740 -2.2483 39 1 5.9414 3.8445 -1.4992 40 1 4.0893 2.6524 -3.3958 41 1 5.1621 1.6866 -2.3544 42 1 2.2328 1.4272 -2.5514 43 1 3.3713 0.3255 -3.0573 44 1 5.3282 0.0670 -0.0002 45 1 4.1882 -2.1159 0.0086 46 1 3.5986 -4.2748 -1.6395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162744994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:09 Heat of formation + Delta-G solvation = 60.595353 kcal Electronic energy + Delta-G solvation = -27699.567248 eV Core-core repulsion = 24167.109280 eV Total energy + Delta-G solvation = -3532.457968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50996 -40.05900 -38.19979 -35.63447 -35.05159 -33.85846 -33.01300 -32.33597 -31.19852 -30.11374 -28.48360 -26.97878 -25.74574 -25.12019 -23.25878 -22.78742 -22.18963 -21.78858 -20.26315 -18.96611 -17.83304 -17.44292 -17.01303 -16.68714 -16.42421 -16.08184 -15.76190 -15.49213 -15.33675 -15.22327 -14.84431 -14.50497 -14.18328 -13.97812 -13.89415 -13.76041 -13.46380 -13.24364 -13.19311 -13.01342 -12.85595 -12.72017 -12.59006 -12.49660 -12.34351 -12.18884 -12.10117 -11.68577 -11.50360 -11.31615 -11.04128 -10.03561 -9.73161 -9.63573 -9.46656 -9.41456 -9.11222 -8.66326 -8.40595 -6.13511 0.50212 0.52800 1.04547 1.38153 1.43520 1.55695 1.59581 2.27334 2.88425 2.90289 3.07982 3.56881 3.76094 3.87740 4.04288 4.09945 4.19663 4.25447 4.32146 4.40411 4.43421 4.50432 4.58439 4.65051 4.73370 4.78434 4.81007 4.83167 4.87239 4.94334 5.07169 5.12371 5.16888 5.18969 5.28708 5.30810 5.37070 5.49729 5.62079 5.65626 5.71608 5.79016 5.86726 6.16133 6.17564 6.18900 6.35740 6.42045 6.61488 6.63465 6.90316 7.03687 7.25808 8.05322 8.47581 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.003317 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.708516 B = 8439.770067 C = 8799.780593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.017 3.983 3 N -0.491 5.491 4 C 0.237 3.763 5 N -0.464 5.464 6 C 0.106 3.894 7 C -0.091 4.091 8 C -0.130 4.130 9 C -0.126 4.126 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.083 4.083 13 C -0.064 4.064 14 C 0.097 3.903 15 H 0.027 0.973 16 C 0.078 3.922 17 N -0.830 5.830 18 C -0.117 4.117 19 C -0.130 4.130 20 C 0.046 3.954 21 C -0.481 4.481 22 H 0.076 0.924 23 C 0.035 3.965 24 N -0.830 5.830 25 Si 0.973 3.027 26 H -0.260 1.260 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.331 0.669 43 H 0.333 0.667 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 15.158 -0.451 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.125 4.125 3 N -0.203 5.203 4 C 0.007 3.993 5 N -0.187 5.187 6 C -0.022 4.022 7 C -0.092 4.092 8 C -0.148 4.148 9 C -0.144 4.144 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.083 4.083 13 C -0.102 4.102 14 C -0.012 4.012 15 H 0.045 0.955 16 C -0.053 4.053 17 N -0.359 5.359 18 C -0.139 4.139 19 C -0.157 4.157 20 C 0.042 3.958 21 C -0.513 4.513 22 H 0.094 0.906 23 C -0.178 4.178 24 N -0.457 5.457 25 Si 0.795 3.205 26 H -0.183 1.183 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.230 15.602 0.207 16.167 hybrid contribution -0.787 -1.689 -1.017 2.123 sum 3.442 13.913 -0.809 14.356 Atomic orbital electron populations 1.20198 0.90562 1.01042 1.00343 1.20946 0.95326 0.87805 1.08379 1.66747 1.10191 1.30536 1.12835 1.18332 0.86759 0.88932 1.05241 1.60197 1.54123 1.01390 1.02967 1.20751 0.96709 0.90145 0.94568 1.19739 0.99688 0.95086 0.94674 1.21222 1.00778 0.95221 0.97620 1.21339 0.98284 0.95366 0.99390 1.21426 0.99428 1.00684 0.92676 1.21349 0.99863 0.93075 0.99909 1.19738 0.98385 0.95411 0.94807 1.20552 0.99883 0.94400 0.95359 1.21680 0.96860 0.93451 0.89180 0.95534 1.21708 0.96145 0.92034 0.95416 1.58860 1.04675 1.13165 1.59171 1.20734 0.97877 0.92448 1.02821 1.21116 0.94945 0.96004 1.03590 1.18376 0.92504 0.93546 0.91379 1.19639 1.02916 0.93599 1.35098 0.90623 1.26567 0.94840 1.03966 0.92412 1.69896 1.18523 1.32129 1.25154 0.85285 0.79164 0.77251 0.78768 1.18320 1.19634 1.19662 0.93196 0.92753 0.92040 0.91537 0.94279 0.85758 0.83771 0.83351 0.83926 0.88520 0.89585 0.93700 0.91523 0.85672 0.85356 0.89036 0.88068 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.65 9.66 71.24 0.69 -1.96 16 2 C 0.02 0.82 6.58 43.23 0.28 1.10 16 3 N -0.49 -22.28 8.24 -179.36 -1.48 -23.76 16 4 C 0.24 10.35 2.91 133.32 0.39 10.74 16 5 N -0.46 -17.40 4.54 -682.36 -3.10 -20.49 16 6 C 0.11 3.77 5.08 85.58 0.44 4.20 16 7 C -0.09 -2.73 5.79 -19.87 -0.12 -2.85 16 8 C -0.13 -3.31 9.65 22.34 0.22 -3.09 16 9 C -0.13 -2.55 10.05 22.22 0.22 -2.33 16 10 C -0.12 -2.31 10.05 22.23 0.22 -2.09 16 11 C -0.12 -2.59 9.66 22.33 0.22 -2.37 16 12 C -0.08 -2.20 5.77 -19.85 -0.11 -2.32 16 13 C -0.06 -1.62 5.26 29.82 0.16 -1.46 16 14 C 0.10 3.09 2.31 44.83 0.10 3.20 16 15 H 0.03 0.96 8.05 -2.38 -0.02 0.94 16 16 C 0.08 2.43 5.96 86.30 0.51 2.94 16 17 N -0.83 -30.46 5.22 -186.72 -0.98 -31.44 16 18 C -0.12 -5.52 9.07 22.23 0.20 -5.32 16 19 C -0.13 -6.72 8.71 22.64 0.20 -6.52 16 20 C 0.05 2.37 5.57 -21.18 -0.12 2.26 16 21 C -0.48 -24.95 8.09 23.39 0.19 -24.76 16 22 H 0.08 3.80 6.87 -2.91 -0.02 3.78 16 23 C 0.04 1.74 5.27 85.23 0.45 2.19 16 24 N -0.83 -42.41 10.81 21.82 0.24 -42.17 16 25 Si 0.97 38.16 29.57 68.60 2.03 40.19 16 26 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 27 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 28 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.57 6.65 -2.39 -0.02 2.55 16 32 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 33 H 0.04 1.54 7.55 -2.39 -0.02 1.52 16 34 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 2.11 8.11 -2.39 -0.02 2.09 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.33 12.28 8.85 -89.69 -0.79 11.49 16 43 H 0.33 12.38 9.08 -89.69 -0.81 11.57 16 44 H 0.09 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.10 5.57 6.23 -2.91 -0.02 5.55 16 46 H 0.28 13.20 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -58.34 363.97 0.25 -58.09 By element: Atomic # 1 Polarization: 48.63 SS G_CDS: -0.60 Total: 48.03 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 4.14 Total: -28.44 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.31 Total: -117.87 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -58.34 0.25 -58.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162744994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.687 kcal (2) G-P(sol) polarization free energy of solvation -58.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds