Wall clock time and date at job start Tue Mar 31 2020 13:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38684 * 119.27714 * 2 1 4 4 C 1.37999 * 119.62742 * 180.30123 * 3 2 1 5 5 C 1.41002 * 118.28275 * 359.45502 * 4 3 2 6 6 C 1.41016 * 120.70756 * 180.30077 * 5 4 3 7 7 H 1.08008 * 119.99631 * 204.89416 * 6 5 4 8 8 C 1.39942 * 120.00230 * 24.89313 * 6 5 4 9 9 N 1.30870 * 119.99994 * 14.49801 * 8 6 5 10 10 Si 1.86797 * 119.99996 * 194.50294 * 8 6 5 11 11 H 1.48505 * 109.47433 * 89.99778 * 10 8 6 12 12 H 1.48506 * 109.47211 * 209.99574 * 10 8 6 13 13 H 1.48506 * 109.47245 * 329.99742 * 10 8 6 14 14 C 1.41711 * 118.58719 * 0.27116 * 5 4 3 15 15 N 1.38092 * 119.90783 * 179.97438 * 14 5 4 16 16 C 1.46495 * 120.00017 * 180.02562 * 15 14 5 17 17 C 1.52999 * 109.47028 * 180.02562 * 16 15 14 18 18 H 1.09005 * 109.62533 * 295.38703 * 17 16 15 19 19 C 1.52904 * 109.63127 * 175.00039 * 17 16 15 20 20 C 1.50718 * 109.96200 * 189.91420 * 19 17 16 21 21 C 1.38678 * 118.48967 * 196.86446 * 20 19 17 22 22 C 1.38033 * 120.34851 * 180.16119 * 21 20 19 23 23 C 1.38262 * 119.82466 * 0.02562 * 22 21 20 24 24 C 1.38006 * 119.87358 * 359.92706 * 23 22 21 25 25 C 1.37828 * 121.66049 * 16.91102 * 20 19 17 26 26 C 1.50632 * 121.85159 * 359.49865 * 25 20 19 27 27 N 1.46637 * 110.48395 * 17.59313 * 26 25 20 28 28 N 1.31975 * 119.27449 * 179.74272 * 2 1 3 29 29 H 1.09000 * 109.47411 * 270.25274 * 1 2 3 30 30 H 1.09004 * 109.47012 * 30.26142 * 1 2 3 31 31 H 1.09003 * 109.47256 * 150.25066 * 1 2 3 32 32 H 1.08004 * 120.18815 * 0.03117 * 3 2 1 33 33 H 1.08001 * 120.86035 * 179.72935 * 4 3 2 34 34 H 0.96998 * 120.00025 * 180.02562 * 9 8 6 35 35 H 0.96996 * 119.99833 * 0.02562 * 15 14 5 36 36 H 1.09005 * 109.47279 * 299.99946 * 16 15 14 37 37 H 1.09004 * 109.47524 * 60.00009 * 16 15 14 38 38 H 1.08999 * 109.38389 * 310.06410 * 19 17 16 39 39 H 1.08999 * 109.38826 * 69.76187 * 19 17 16 40 40 H 1.08003 * 119.82407 * 0.13715 * 21 20 19 41 41 H 1.07995 * 120.08600 * 180.02562 * 22 21 20 42 42 H 1.08009 * 120.06513 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.81350 * 179.97438 * 24 23 22 44 44 H 1.08990 * 109.30016 * 137.90647 * 26 25 20 45 45 H 1.08999 * 109.29690 * 257.49350 * 26 25 20 46 46 H 1.00897 * 110.99533 * 184.02840 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2181 -0.0063 5 6 4.2409 -0.0194 -0.0008 6 6 5.6501 -0.0704 -0.0004 7 1 6.1591 -0.9396 -0.3903 8 6 6.3891 1.0051 0.5050 9 7 5.7987 1.9226 1.2277 10 14 8.2183 1.1313 0.1479 11 1 8.4262 1.8997 -1.1058 12 1 8.8954 1.8261 1.2723 13 1 8.7877 -0.2315 -0.0066 14 6 3.4737 -1.2109 0.0051 15 7 4.1073 -2.4378 0.0100 16 6 3.3162 -3.6708 0.0155 17 6 4.2549 -4.8790 0.0209 18 1 4.8271 -4.9022 -0.9065 19 6 3.4371 -6.1643 0.1522 20 6 4.3539 -7.3342 0.4018 21 6 3.8621 -8.6149 0.1991 22 6 4.6675 -9.7142 0.4193 23 6 5.9711 -9.5374 0.8447 24 6 6.4618 -8.2633 1.0457 25 6 5.6543 -7.1573 0.8230 26 6 6.2377 -5.7869 1.0474 27 7 5.1706 -4.7885 1.1693 28 7 2.1523 -1.1512 0.0052 29 1 -0.3634 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6365 2.1400 0.0005 33 1 4.1134 2.1486 -0.0108 34 1 6.3109 2.6682 1.5778 35 1 5.0762 -2.4832 0.0099 36 1 2.6878 -3.6954 0.9059 37 1 2.6872 -3.7029 -0.8741 38 1 2.7404 -6.0664 0.9847 39 1 2.8777 -6.3327 -0.7680 40 1 2.8436 -8.7530 -0.1324 41 1 4.2803 -10.7096 0.2598 42 1 6.6045 -10.3948 1.0186 43 1 7.4801 -8.1263 1.3784 44 1 6.8312 -5.7933 1.9616 45 1 6.8772 -5.5251 0.2045 46 1 5.5533 -3.8588 1.2542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163276300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:54 Heat of formation + Delta-G solvation = 37.264677 kcal Electronic energy + Delta-G solvation = -26395.608796 eV Core-core repulsion = 22862.139135 eV Total energy + Delta-G solvation = -3533.469662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06928 -40.37191 -38.28692 -36.07371 -35.77226 -33.80471 -32.71856 -32.20496 -31.22669 -30.32423 -29.35068 -26.80919 -25.58050 -25.37500 -23.24671 -23.02798 -22.52824 -21.99837 -20.38069 -19.11873 -18.16969 -17.57821 -17.33554 -16.80442 -16.61355 -16.32330 -15.73543 -15.57330 -15.41703 -15.34275 -15.01037 -14.61569 -14.30803 -14.17487 -13.96792 -13.88366 -13.72975 -13.48956 -13.28744 -13.17639 -12.96430 -12.84125 -12.73682 -12.57381 -12.52096 -12.30757 -12.14157 -11.71178 -11.65268 -11.48273 -11.10229 -10.58926 -9.93725 -9.82077 -9.75399 -9.52087 -9.32218 -8.61840 -8.29192 -6.12355 0.46338 0.49288 0.92042 1.24150 1.40193 1.51696 1.52651 2.21892 2.65689 2.83757 2.86658 3.14271 3.63429 3.76202 3.79865 4.02066 4.09798 4.16994 4.20171 4.25801 4.35295 4.46557 4.49974 4.54208 4.62748 4.74461 4.75174 4.79885 4.84789 4.87713 4.97986 5.01453 5.05246 5.10856 5.14608 5.18766 5.25751 5.27295 5.44776 5.57319 5.63211 5.70276 5.81587 5.91715 5.96109 6.11953 6.14582 6.30596 6.41857 6.77255 6.82196 6.92254 7.14456 7.94757 8.40871 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003430 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.156221 B = 8160.211281 C =10294.126854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.021 3.979 3 C -0.200 4.200 4 C -0.146 4.146 5 C -0.005 4.005 6 C -0.478 4.478 7 H 0.079 0.921 8 C 0.033 3.967 9 N -0.834 5.834 10 Si 0.980 3.020 11 H -0.268 1.268 12 H -0.274 1.274 13 H -0.254 1.254 14 C 0.302 3.698 15 N -0.723 5.723 16 C 0.159 3.841 17 C 0.086 3.914 18 H 0.045 0.955 19 C -0.064 4.064 20 C -0.083 4.083 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.126 4.126 25 C -0.096 4.096 26 C 0.094 3.906 27 N -0.687 5.687 28 N -0.540 5.540 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.284 0.716 35 H 0.400 0.600 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.096 0.904 45 H 0.047 0.953 46 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -17.570 -1.720 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C -0.223 4.223 4 C -0.173 4.173 5 C -0.012 4.012 6 C -0.509 4.509 7 H 0.097 0.903 8 C -0.180 4.180 9 N -0.461 5.461 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.178 1.178 14 C 0.064 3.936 15 N -0.363 5.363 16 C 0.034 3.966 17 C -0.024 4.024 18 H 0.063 0.937 19 C -0.102 4.102 20 C -0.084 4.084 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.096 4.096 26 C -0.034 4.034 27 N -0.320 5.320 28 N -0.259 5.259 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.114 0.886 45 H 0.065 0.935 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.004 -18.601 -1.160 18.637 hybrid contribution 2.153 1.850 -0.572 2.896 sum 2.149 -16.750 -1.731 16.976 Atomic orbital electron populations 1.20341 0.88268 1.02280 1.01708 1.20794 0.96750 0.87495 1.06304 1.21484 0.94833 0.98077 1.07863 1.21444 0.93244 0.98001 1.04608 1.18259 0.94829 0.90862 0.97236 1.19346 0.90851 1.03468 1.37234 0.90280 1.26631 1.05191 0.94186 0.91995 1.69877 1.40161 1.10929 1.25127 0.85228 0.76456 0.79691 0.78483 1.19333 1.19901 1.17761 1.18642 0.88259 0.86370 1.00352 1.43686 1.07441 1.01355 1.83807 1.20990 0.93072 0.82055 1.00447 1.21666 0.94100 0.94639 0.92018 0.93745 1.20471 0.96600 0.90098 1.03054 1.19703 0.94146 0.95141 0.99386 1.21347 1.00867 0.91669 1.00883 1.21416 0.94305 0.99440 0.99216 1.21380 0.96359 0.97320 0.99609 1.21277 1.00271 0.92211 1.00634 1.19776 0.94311 0.95181 1.00380 1.20853 0.92364 0.88716 1.01505 1.60684 1.19743 1.09025 1.42581 1.66513 1.08184 1.30313 1.20852 0.91901 0.90556 0.91935 0.86646 0.87038 0.90525 0.76264 0.93693 0.92898 0.90109 0.88911 0.84601 0.83774 0.83775 0.84635 0.88618 0.93527 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.37 10.15 71.24 0.72 -1.65 16 2 C 0.02 0.96 6.79 42.64 0.29 1.25 16 3 C -0.20 -9.60 9.69 22.32 0.22 -9.38 16 4 C -0.15 -7.84 8.79 22.89 0.20 -7.64 16 5 C 0.00 -0.26 5.60 -21.06 -0.12 -0.38 16 6 C -0.48 -24.44 8.54 23.36 0.20 -24.24 16 7 H 0.08 3.76 6.67 -2.91 -0.02 3.74 16 8 C 0.03 1.64 5.23 85.25 0.45 2.08 16 9 N -0.83 -43.33 10.83 21.83 0.24 -43.10 16 10 Si 0.98 37.34 29.58 68.60 2.03 39.37 16 11 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 12 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 13 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 14 C 0.30 14.92 7.52 134.05 1.01 15.93 16 15 N -0.72 -29.58 5.20 -343.65 -1.79 -31.37 16 16 C 0.16 5.46 5.37 86.38 0.46 5.92 16 17 C 0.09 2.40 2.68 44.83 0.12 2.52 16 18 H 0.04 1.26 8.05 -2.38 -0.02 1.24 16 19 C -0.06 -1.55 5.26 29.82 0.16 -1.40 16 20 C -0.08 -1.97 5.77 -19.85 -0.11 -2.09 16 21 C -0.13 -2.56 9.66 22.33 0.22 -2.34 16 22 C -0.13 -2.13 10.05 22.23 0.22 -1.91 16 23 C -0.13 -2.18 10.05 22.22 0.22 -1.96 16 24 C -0.13 -2.46 9.65 22.33 0.22 -2.25 16 25 C -0.10 -2.27 5.79 -19.86 -0.12 -2.38 16 26 C 0.09 2.26 6.34 85.59 0.54 2.81 16 27 N -0.69 -19.52 6.60 -495.93 -3.27 -22.79 16 28 N -0.54 -26.10 9.44 -179.56 -1.70 -27.80 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.11 6.20 6.17 -2.91 -0.02 6.19 16 34 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 35 H 0.40 15.68 5.43 -92.71 -0.50 15.18 16 36 H 0.04 1.69 8.12 -2.38 -0.02 1.67 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.04 8.09 -2.39 -0.02 2.02 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.10 2.08 8.13 -2.39 -0.02 2.06 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.35 10.59 7.00 -89.70 -0.63 9.96 16 Total: -1.00 -62.20 370.93 0.28 -61.92 By element: Atomic # 1 Polarization: 51.00 SS G_CDS: -0.13 Total: 50.87 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.90 Total: -27.10 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -6.52 Total: -125.06 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -62.20 0.28 -61.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163276300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.182 kcal (2) G-P(sol) polarization free energy of solvation -62.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds