Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46961 * 111.00250 * 2 1 4 4 C 1.53049 * 109.36604 * 176.81247 * 3 2 1 5 5 N 1.46951 * 109.36449 * 58.40082 * 4 3 2 6 6 C 1.39086 * 111.00081 * 176.81175 * 5 4 3 7 7 C 1.38745 * 119.65332 * 303.80342 * 6 5 4 8 8 C 1.40773 * 118.66592 * 179.70032 * 7 6 5 9 9 C 1.41556 * 120.99145 * 180.25096 * 8 7 6 10 10 H 1.07995 * 120.00048 * 156.15209 * 9 8 7 11 11 C 1.40027 * 120.00053 * 336.14715 * 9 8 7 12 12 N 1.30738 * 119.99790 * 343.16691 * 11 9 8 13 13 Si 1.86794 * 119.99777 * 163.16974 * 11 9 8 14 14 H 1.48497 * 109.47338 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47073 * 120.00116 * 13 11 9 16 16 H 1.48504 * 109.46945 * 239.99673 * 13 11 9 17 17 C 1.41185 * 118.01640 * 0.27169 * 8 7 6 18 18 C 1.36557 * 119.14581 * 0.02562 * 17 8 7 19 19 N 1.32096 * 121.26535 * 359.97438 * 18 17 8 20 20 C 1.46957 * 110.88238 * 300.67602 * 5 4 3 21 21 H 1.08998 * 109.49030 * 299.35956 * 20 5 4 22 22 C 1.50695 * 109.49160 * 179.28749 * 20 5 4 23 23 C 1.38240 * 119.99945 * 319.73388 * 22 20 5 24 24 C 1.38236 * 119.99676 * 179.76659 * 23 22 20 25 25 C 1.38233 * 120.00238 * 0.49740 * 24 23 22 26 26 C 1.38240 * 120.00081 * 359.75259 * 25 24 23 27 27 C 1.38233 * 120.00104 * 139.99786 * 22 20 5 28 28 C 1.46955 * 111.00393 * 236.19931 * 2 1 3 29 29 H 1.09005 * 109.47221 * 183.80276 * 1 2 3 30 30 H 1.09001 * 109.47517 * 303.80145 * 1 2 3 31 31 H 1.09000 * 109.47333 * 63.80224 * 1 2 3 32 32 H 1.09004 * 109.48428 * 296.78252 * 3 2 1 33 33 H 1.09002 * 109.48625 * 56.82186 * 3 2 1 34 34 H 1.08996 * 109.48713 * 298.42933 * 4 3 2 35 35 H 1.09004 * 109.48822 * 178.37169 * 4 3 2 36 36 H 1.07997 * 120.67167 * 359.96957 * 7 6 5 37 37 H 0.97005 * 120.00070 * 180.02562 * 12 11 9 38 38 H 1.08007 * 120.42922 * 179.97438 * 17 8 7 39 39 H 1.08000 * 119.36692 * 179.97438 * 18 17 8 40 40 H 1.07998 * 119.99957 * 359.97438 * 23 22 20 41 41 H 1.07998 * 120.00084 * 180.22865 * 24 23 22 42 42 H 1.08000 * 120.00459 * 179.72511 * 25 24 23 43 43 H 1.08002 * 120.00488 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.99895 * 0.02562 * 27 22 20 45 45 H 1.09000 * 109.48557 * 63.21918 * 28 2 1 46 46 H 1.09003 * 109.50273 * 303.17059 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0500 0.5659 -1.0598 6 6 5.4409 0.5658 -1.0598 7 6 6.1274 1.7716 -1.0597 8 6 7.5349 1.7473 -1.0533 9 6 8.2846 2.9480 -1.0476 10 1 9.2944 2.9523 -0.6648 11 6 7.7169 4.1302 -1.5384 12 7 6.6493 4.0792 -2.2914 13 14 8.4850 5.7800 -1.1174 14 1 9.6767 5.5663 -0.2576 15 1 8.8945 6.4689 -2.3677 16 1 7.4947 6.6166 -0.3929 17 6 8.1765 0.4896 -1.0531 18 6 7.4163 -0.6448 -1.0597 19 7 6.0967 -0.5858 -1.0656 20 6 3.5235 -0.8061 -1.0597 21 1 3.8253 -1.3115 -0.1424 22 6 4.0686 -1.5539 -2.2491 23 6 4.1780 -0.9206 -3.4729 24 6 4.6826 -1.6051 -4.5627 25 6 5.0681 -2.9261 -4.4312 26 6 4.9539 -3.5610 -3.2086 27 6 4.4541 -2.8749 -2.1175 28 6 1.9957 -0.7632 -1.1400 29 1 -0.3634 -1.0254 0.0682 30 1 -0.3634 0.5717 0.8539 31 1 -0.3634 0.4537 -0.9221 32 1 1.6937 1.8774 -0.9174 33 1 1.6010 1.9130 0.8601 34 1 3.8253 0.8480 1.0106 35 1 3.9178 2.3449 0.0513 36 1 5.5927 2.7099 -1.0601 37 1 6.2562 4.8981 -2.6317 38 1 9.2546 0.4255 -1.0487 39 1 7.9034 -1.6087 -1.0600 40 1 3.8724 0.1101 -3.5768 41 1 4.7715 -1.1093 -5.5180 42 1 5.4582 -3.4623 -5.2837 43 1 5.2547 -4.5932 -3.1059 44 1 4.3643 -3.3711 -1.1625 45 1 1.6938 -0.2821 -2.0703 46 1 1.6013 -1.7790 -1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163671607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = 82.399284 kcal Electronic energy + Delta-G solvation = -28039.810279 eV Core-core repulsion = 24508.297801 eV Total energy + Delta-G solvation = -3531.512478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.12763 -38.14794 -37.78989 -35.07343 -33.90777 -32.29600 -30.55731 -30.30651 -29.53425 -28.63851 -26.95810 -25.97457 -23.79325 -23.67724 -22.03093 -21.47190 -20.84020 -20.63712 -19.20204 -17.62510 -16.40267 -15.91721 -15.51315 -15.07058 -15.03911 -14.87030 -14.56119 -14.32564 -14.19428 -13.94120 -13.52748 -13.33787 -12.89663 -12.78204 -12.63376 -12.43677 -12.37144 -12.17318 -11.78705 -11.60716 -11.44654 -11.33920 -11.18144 -11.02027 -10.87948 -10.57136 -10.47010 -10.28324 -10.21700 -9.94059 -9.42419 -8.86031 -8.40383 -8.28169 -8.24635 -7.92212 -7.66816 -6.90546 -6.78247 -4.56669 1.96690 2.02285 2.73794 2.86512 3.02811 3.07945 3.25722 3.86530 3.99218 4.24874 4.44743 4.66623 5.06361 5.12493 5.28573 5.37185 5.43071 5.45634 5.49349 5.57601 5.65528 5.67162 5.69638 5.73528 5.81369 5.91505 5.93206 6.05348 6.12646 6.20024 6.27516 6.35786 6.53821 6.57834 6.68199 6.82997 6.89565 6.99041 7.01914 7.07040 7.08328 7.15005 7.21174 7.25128 7.47577 7.59670 7.62848 7.74032 7.94063 8.26903 8.60517 8.78504 8.81162 9.63787 10.09405 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.005035 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.639396 B = 5559.503366 C = 7106.452591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.057 3.943 4 C 0.065 3.935 5 N -0.470 5.470 6 C 0.290 3.710 7 C -0.220 4.220 8 C 0.138 3.862 9 C -0.456 4.456 10 H 0.080 0.920 11 C 0.079 3.921 12 N -0.780 5.780 13 Si 0.907 3.093 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.271 1.271 17 C -0.283 4.283 18 C 0.119 3.881 19 N -0.584 5.584 20 C 0.141 3.859 21 H 0.063 0.937 22 C -0.017 4.017 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.097 4.097 28 C 0.064 3.936 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.281 0.719 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.042 0.958 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -6.180 0.776 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.062 4.062 5 N -0.189 5.189 6 C 0.065 3.935 7 C -0.245 4.245 8 C 0.130 3.870 9 C -0.488 4.488 10 H 0.098 0.902 11 C -0.141 4.141 12 N -0.405 5.405 13 Si 0.731 3.269 14 H -0.183 1.183 15 H -0.199 1.199 16 H -0.196 1.196 17 C -0.307 4.307 18 C -0.035 4.035 19 N -0.303 5.303 20 C 0.033 3.967 21 H 0.081 0.919 22 C -0.019 4.019 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.116 4.116 28 C -0.064 4.064 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.060 0.940 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.209 -6.797 0.659 12.282 hybrid contribution 1.050 1.713 -0.123 2.013 sum -9.159 -5.084 0.536 10.489 Atomic orbital electron populations 1.22321 0.87495 1.01963 1.00352 1.62152 1.07488 1.14230 1.43175 1.22218 0.94894 0.88997 1.00990 1.22206 0.93242 0.99347 0.91387 1.59580 1.05644 1.13256 1.40437 1.19293 0.87067 0.90370 0.96746 1.21592 0.94384 0.96138 1.12398 1.17664 0.91641 0.92104 0.85597 1.19605 1.00661 0.92164 1.36328 0.90201 1.25939 0.94351 1.01360 0.92452 1.69811 1.18150 1.30433 1.22149 0.86276 0.80244 0.81021 0.79321 1.18335 1.19903 1.19610 1.21551 0.98810 0.93795 1.16504 1.21276 0.89226 0.96487 0.96533 1.67193 1.09846 1.27643 1.25575 1.20296 0.91622 0.88411 0.96379 0.91882 1.19219 0.96377 0.93081 0.93187 1.20916 0.98786 0.99428 0.92252 1.20995 1.00039 0.94670 0.98534 1.20913 1.01880 0.95221 0.97302 1.20889 1.01043 0.99294 0.93270 1.20715 0.98882 0.94220 0.97745 1.22257 0.94320 0.98171 0.91687 0.91537 0.91512 0.95723 0.93845 0.90300 0.93769 0.89191 0.85508 0.90788 0.88531 0.86747 0.86318 0.87178 0.87314 0.87161 0.87138 0.93977 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.60 60.06 0.58 0.87 16 2 N -0.55 -7.59 4.97 -242.75 -1.21 -8.80 16 3 C 0.06 0.82 5.62 -3.77 -0.02 0.80 16 4 C 0.07 1.15 5.37 -3.77 -0.02 1.13 16 5 N -0.47 -9.27 3.93 -166.87 -0.66 -9.93 16 6 C 0.29 6.71 5.58 -154.98 -0.86 5.85 16 7 C -0.22 -5.59 7.90 -38.44 -0.30 -5.89 16 8 C 0.14 3.63 5.60 -106.56 -0.60 3.04 16 9 C -0.46 -11.85 9.12 -37.65 -0.34 -12.19 16 10 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 11 C 0.08 1.92 5.20 -17.35 -0.09 1.83 16 12 N -0.78 -19.63 10.92 55.55 0.61 -19.02 16 13 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 14 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 C -0.28 -6.91 9.85 -39.07 -0.38 -7.30 16 18 C 0.12 2.73 11.10 -18.05 -0.20 2.53 16 19 N -0.58 -13.37 6.92 -12.82 -0.09 -13.46 16 20 C 0.14 2.50 1.75 -68.81 -0.12 2.38 16 21 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 22 C -0.02 -0.31 2.70 -104.63 -0.28 -0.59 16 23 C -0.10 -1.78 8.78 -39.58 -0.35 -2.13 16 24 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 25 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 26 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 27 C -0.10 -1.61 9.35 -39.58 -0.37 -1.98 16 28 C 0.06 0.95 4.88 -3.77 -0.02 0.93 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.65 6.79 -51.93 -0.35 1.30 16 36 H 0.13 3.32 5.32 -52.49 -0.28 3.04 16 37 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.12 2.37 7.73 -52.49 -0.41 1.97 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.70 8.04 -52.48 -0.42 1.27 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -27.73 367.59 -12.33 -40.05 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.91 Total: 10.62 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -4.58 Total: -18.11 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -1.34 Total: -51.21 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.73 -12.33 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163671607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.454 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds