Wall clock time and date at job start Tue Mar 31 2020 14:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00270 * 2 1 4 4 H 1.09003 * 109.47134 * 39.55465 * 3 2 1 5 5 C 1.52995 * 109.47356 * 159.55684 * 3 2 1 6 6 C 1.53008 * 109.47306 * 295.00045 * 5 3 2 7 7 C 1.52995 * 109.47306 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47124 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.47356 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47132 * 279.55672 * 3 2 1 11 11 O 1.21285 * 120.00369 * 334.80174 * 10 3 2 12 12 N 1.34782 * 119.99570 * 154.80203 * 10 3 2 13 13 C 1.40009 * 119.99361 * 183.96882 * 12 10 3 14 14 C 1.39363 * 119.91452 * 324.47399 * 13 12 10 15 15 C 1.38362 * 120.47230 * 179.72360 * 14 13 12 16 16 C 1.38013 * 120.28803 * 0.55622 * 15 14 13 17 17 F 1.35102 * 120.09443 * 179.70055 * 16 15 14 18 18 C 1.41007 * 119.80974 * 359.72270 * 16 15 14 19 19 C 1.41290 * 120.22825 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00115 * 33.88586 * 19 18 16 21 21 C 1.39928 * 119.99972 * 213.88301 * 19 18 16 22 22 N 1.30854 * 119.99932 * 5.81157 * 21 19 18 23 23 Si 1.86793 * 120.00130 * 185.81206 * 21 19 18 24 24 H 1.48505 * 109.47000 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47386 * 119.99897 * 23 21 19 26 26 H 1.48501 * 109.47326 * 240.00133 * 23 21 19 27 27 C 1.38149 * 119.90966 * 144.75526 * 13 12 10 28 28 H 1.08997 * 109.46610 * 184.99108 * 1 2 3 29 29 H 1.08999 * 109.46667 * 304.99106 * 1 2 3 30 30 H 1.08999 * 109.46852 * 64.99287 * 1 2 3 31 31 H 1.00904 * 110.99600 * 236.04660 * 2 1 3 32 32 H 1.08996 * 109.47302 * 54.99976 * 5 3 2 33 33 H 1.09002 * 109.47544 * 175.00064 * 5 3 2 34 34 H 1.08996 * 109.46883 * 300.00187 * 6 5 3 35 35 H 1.09004 * 109.46546 * 60.00037 * 6 5 3 36 36 H 1.09007 * 109.46896 * 299.99695 * 7 6 5 37 37 H 1.08994 * 109.47287 * 59.99981 * 7 6 5 38 38 H 1.09005 * 109.47200 * 299.99960 * 8 7 6 39 39 H 1.09007 * 109.47657 * 59.99621 * 8 7 6 40 40 H 1.00898 * 111.00037 * 179.97438 * 9 8 7 41 41 H 1.00898 * 111.00047 * 303.94880 * 9 8 7 42 42 H 0.96994 * 120.00523 * 3.96815 * 12 10 3 43 43 H 1.08006 * 119.76232 * 0.02562 * 14 13 12 44 44 H 1.08006 * 119.85968 * 180.25899 * 15 14 13 45 45 H 0.97001 * 120.00020 * 179.97438 * 22 21 19 46 46 H 1.07995 * 120.14042 * 359.96798 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3860 1.9946 0.6544 5 6 3.4401 1.3631 0.5038 6 6 3.4672 0.9191 1.9678 7 6 4.9119 0.9103 2.4714 8 6 4.9390 0.4657 3.9351 9 7 6.3261 0.4566 4.4186 10 6 1.9554 1.9249 -1.4011 11 8 1.9806 1.1719 -2.3516 12 7 1.8914 3.2567 -1.5979 13 6 1.7702 3.7674 -2.8959 14 6 2.4141 3.1317 -3.9558 15 6 2.2976 3.6232 -5.2439 16 6 1.5504 4.7569 -5.4914 17 9 1.4443 5.2368 -6.7499 18 6 0.8986 5.4130 -4.4271 19 6 0.1318 6.5745 -4.6704 20 1 -0.4142 6.6770 -5.5965 21 6 0.0798 7.5921 -3.7113 22 7 0.8290 7.5212 -2.6409 23 14 -1.0592 9.0518 -3.9591 24 1 -1.7933 8.8948 -5.2404 25 1 -2.0295 9.1186 -2.8371 26 1 -0.2597 10.3026 -3.9973 27 6 1.0174 4.9036 -3.1216 28 1 -0.3632 -1.0238 0.0894 29 1 -0.3632 0.5893 0.8419 30 1 -0.3633 0.4344 -0.9313 31 1 1.8306 -0.5261 -0.7814 32 1 4.0304 0.6710 -0.0967 33 1 3.8599 2.3656 0.4204 34 1 2.8769 1.6113 2.5683 35 1 3.0475 -0.0834 2.0512 36 1 5.5018 0.2178 1.8708 37 1 5.3319 1.9125 2.3879 38 1 4.3489 1.1578 4.5361 39 1 4.5190 -0.5367 4.0184 40 1 6.3707 0.1665 5.3839 41 1 6.9077 -0.1286 3.8377 42 1 1.9292 3.8613 -0.8404 43 1 3.0044 2.2463 -3.7711 44 1 2.7975 3.1203 -6.0586 45 1 0.7932 8.2268 -1.9762 46 1 0.5219 5.3980 -2.2992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219518191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:58 Heat of formation + Delta-G solvation = -101.701740 kcal Electronic energy + Delta-G solvation = -26952.831617 eV Core-core repulsion = 22982.566694 eV Total energy + Delta-G solvation = -3970.264923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.24886 -41.56006 -39.26925 -37.69094 -36.47374 -35.96534 -35.12026 -33.80144 -31.73539 -30.90505 -29.58166 -27.32469 -26.68058 -25.11145 -23.56207 -23.29997 -22.22992 -21.85772 -21.16192 -19.41487 -18.83505 -18.04225 -17.69089 -17.03664 -16.96651 -16.45637 -16.40023 -16.15641 -16.00684 -15.83149 -15.74194 -15.07341 -14.90111 -14.79629 -14.47076 -14.32005 -13.97744 -13.75858 -13.57731 -13.40461 -13.22949 -12.98272 -12.87687 -12.77975 -12.67970 -12.55837 -12.17839 -12.04867 -11.87512 -11.81636 -11.58271 -11.36610 -11.22150 -11.03255 -10.74843 -9.61072 -9.56797 -9.48637 -8.87354 -8.57960 -6.49919 0.55642 0.81565 1.38263 1.41472 1.52193 1.61781 2.15847 2.20246 2.65813 3.14606 3.39861 3.52680 3.77324 3.96297 3.98967 4.09888 4.16349 4.22309 4.25392 4.47922 4.55601 4.59562 4.62071 4.68582 4.78896 4.89185 4.92176 4.94895 4.97907 5.00317 5.01002 5.09450 5.22363 5.22919 5.46656 5.55909 5.60816 5.68133 5.71698 5.80014 5.92444 6.09468 6.21863 6.28304 6.43007 6.60392 6.62495 6.74595 6.80513 7.17294 8.30706 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.002757 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.246038 B =10153.864078 C =10895.381775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.657 5.657 3 C 0.082 3.918 4 H 0.120 0.880 5 C -0.096 4.096 6 C -0.096 4.096 7 C -0.116 4.116 8 C 0.062 3.938 9 N -0.866 5.866 10 C 0.479 3.521 11 O -0.564 6.564 12 N -0.655 5.655 13 C 0.143 3.857 14 C -0.200 4.200 15 C -0.117 4.117 16 C -0.056 4.056 17 F -0.168 7.168 18 C 0.070 3.930 19 C -0.495 4.495 20 H 0.068 0.932 21 C 0.039 3.961 22 N -0.825 5.825 23 Si 0.986 3.014 24 H -0.267 1.267 25 H -0.257 1.257 26 H -0.265 1.265 27 C -0.162 4.162 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.000 1.000 31 H 0.348 0.652 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.349 0.651 41 H 0.345 0.655 42 H 0.419 0.581 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.292 0.708 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -10.843 15.890 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.032 4.032 4 H 0.138 0.862 5 C -0.135 4.135 6 C -0.135 4.135 7 C -0.154 4.154 8 C -0.068 4.068 9 N -0.396 5.396 10 C 0.266 3.734 11 O -0.442 6.442 12 N -0.300 5.300 13 C 0.049 3.951 14 C -0.221 4.221 15 C -0.136 4.136 16 C -0.076 4.076 17 F -0.147 7.147 18 C 0.066 3.934 19 C -0.525 4.525 20 H 0.087 0.913 21 C -0.176 4.176 22 N -0.451 5.451 23 Si 0.807 3.193 24 H -0.191 1.191 25 H -0.181 1.181 26 H -0.189 1.189 27 C -0.184 4.184 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.019 0.981 31 H 0.168 0.832 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.256 0.744 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.102 0.898 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.725 -10.580 15.991 19.533 hybrid contribution -0.729 0.383 -1.372 1.600 sum 2.997 -10.197 14.619 18.074 Atomic orbital electron populations 1.22341 0.87220 1.03424 0.99792 1.60893 1.08413 1.10200 1.49222 1.21907 1.00296 0.91496 0.89528 0.86235 1.21463 0.91913 1.02260 0.97838 1.21327 0.96054 1.02829 0.93243 1.21544 0.96982 1.01676 0.95212 1.21778 0.89672 0.99502 0.95898 1.58716 1.10273 1.62600 1.08034 1.22797 0.74584 0.81643 0.94375 1.90657 1.50149 1.58500 1.44877 1.43595 1.71404 1.07857 1.07114 1.17714 0.97422 0.94891 0.85077 1.20473 1.06960 1.03378 0.91304 1.20697 0.99894 0.95190 0.97839 1.18315 1.08761 1.00783 0.79767 1.91243 1.95698 1.88766 1.39004 1.17762 0.91812 0.92864 0.90943 1.19594 1.27376 1.01653 1.03870 0.91340 1.26619 0.95728 1.01919 0.93315 1.69767 1.32433 1.34115 1.08764 0.85091 0.78171 0.76556 0.79511 1.19071 1.18092 1.18927 1.20895 1.03303 0.96785 0.97399 0.89561 0.90086 0.98087 0.83210 0.92093 0.90879 0.91187 0.90600 0.92461 0.92218 0.91139 0.95022 0.83845 0.84282 0.74368 0.85929 0.85464 0.89753 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.51 127.69 1.34 1.78 16 2 N -0.66 -13.76 5.99 -518.54 -3.10 -16.87 16 3 C 0.08 1.76 2.37 44.17 0.10 1.87 16 4 H 0.12 2.12 7.80 -2.39 -0.02 2.11 16 5 C -0.10 -1.78 4.87 30.60 0.15 -1.63 16 6 C -0.10 -1.41 5.10 30.60 0.16 -1.25 16 7 C -0.12 -1.71 5.47 30.59 0.17 -1.54 16 8 C 0.06 0.82 6.79 86.30 0.59 1.41 16 9 N -0.87 -11.16 9.62 -186.71 -1.80 -12.96 16 10 C 0.48 15.05 6.48 87.66 0.57 15.61 16 11 O -0.56 -21.90 13.40 -3.04 -0.04 -21.94 16 12 N -0.65 -22.26 5.33 -303.60 -1.62 -23.88 16 13 C 0.14 6.34 6.28 38.08 0.24 6.58 16 14 C -0.20 -9.16 8.69 22.57 0.20 -8.96 16 15 C -0.12 -5.53 10.00 22.25 0.22 -5.31 16 16 C -0.06 -2.96 7.31 22.90 0.17 -2.79 16 17 F -0.17 -8.88 16.81 44.97 0.76 -8.13 16 18 C 0.07 3.81 5.51 -21.26 -0.12 3.70 16 19 C -0.50 -27.07 8.71 23.43 0.20 -26.86 16 20 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 21 C 0.04 1.91 5.31 85.25 0.45 2.36 16 22 N -0.82 -40.38 10.95 21.82 0.24 -40.14 16 23 Si 0.99 37.73 29.56 68.60 2.03 39.76 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 26 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 27 C -0.16 -8.05 8.53 22.84 0.19 -7.85 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.35 7.95 -2.39 -0.02 1.33 16 30 H 0.00 0.01 7.93 -2.39 -0.02 -0.01 16 31 H 0.35 8.36 7.81 -89.69 -0.70 7.66 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.16 7.75 -2.38 -0.02 1.14 16 36 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.35 3.34 9.08 -89.70 -0.81 2.53 16 41 H 0.34 3.81 8.99 -89.70 -0.81 3.00 16 42 H 0.42 11.71 8.82 -92.71 -0.82 10.89 16 43 H 0.12 5.43 6.26 -2.91 -0.02 5.42 16 44 H 0.13 5.31 8.06 -2.91 -0.02 5.28 16 45 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 46 H 0.13 6.23 6.44 -2.91 -0.02 6.21 16 Total: -1.00 -63.88 383.06 -1.01 -64.89 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -2.10 Total: 42.17 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 4.63 Total: -22.90 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -6.28 Total: -93.85 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.04 Total: -21.94 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.76 Total: -8.13 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -63.88 -1.01 -64.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.812 kcal (2) G-P(sol) polarization free energy of solvation -63.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds