Wall clock time and date at job start Tue Mar 31 2020 13:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38150 * 119.97298 * 2 1 4 4 C 1.38730 * 119.94590 * 180.02562 * 3 2 1 5 5 O 1.35894 * 120.05958 * 179.97438 * 4 3 2 6 6 C 1.42909 * 116.99703 * 1.20935 * 5 4 3 7 7 H 1.09001 * 109.46839 * 36.62971 * 6 5 4 8 8 C 1.50698 * 109.47079 * 276.62508 * 6 5 4 9 9 H 1.07999 * 119.99783 * 124.31751 * 8 6 5 10 10 C 1.37874 * 120.00050 * 304.31817 * 8 6 5 11 11 N 1.31515 * 120.00233 * 7.24917 * 10 8 6 12 12 Si 1.86802 * 120.00054 * 187.24906 * 10 8 6 13 13 H 1.48489 * 109.47355 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.46993 * 300.00256 * 12 10 8 15 15 H 1.48499 * 109.47149 * 59.99630 * 12 10 8 16 16 C 1.52996 * 109.46974 * 156.62492 * 6 5 4 17 17 N 1.46901 * 109.47300 * 293.25922 * 16 6 5 18 18 C 1.46899 * 109.47296 * 62.51837 * 17 16 6 19 19 C 1.46903 * 109.47136 * 182.52076 * 17 16 6 20 20 C 1.46903 * 109.47018 * 302.51530 * 17 16 6 21 21 C 1.38734 * 119.88756 * 0.25290 * 4 3 2 22 22 C 1.38148 * 119.94049 * 359.49230 * 21 4 3 23 23 C 1.50700 * 119.96887 * 180.22642 * 22 21 4 24 24 C 1.38256 * 120.05809 * 0.51110 * 22 21 4 25 25 N 1.48005 * 119.94611 * 179.76628 * 24 22 21 26 26 O 1.21798 * 120.00223 * 269.97245 * 25 24 22 27 27 O 1.21805 * 120.00355 * 89.97542 * 25 24 22 28 28 H 1.09003 * 109.47376 * 89.99521 * 1 2 3 29 29 H 1.09000 * 109.47465 * 210.00184 * 1 2 3 30 30 H 1.09003 * 109.47359 * 330.00103 * 1 2 3 31 31 H 1.07998 * 120.02472 * 0.04786 * 3 2 1 32 32 H 0.97001 * 119.99508 * 355.20812 * 11 10 8 33 33 H 1.08999 * 109.47170 * 53.25916 * 16 6 5 34 34 H 1.09000 * 109.47327 * 173.25706 * 16 6 5 35 35 H 1.09003 * 109.46979 * 48.18043 * 18 17 16 36 36 H 1.09001 * 109.47143 * 168.18076 * 18 17 16 37 37 H 1.08998 * 109.46567 * 288.17673 * 18 17 16 38 38 H 1.09002 * 109.47262 * 59.99338 * 19 17 16 39 39 H 1.09001 * 109.47077 * 179.97438 * 19 17 16 40 40 H 1.09000 * 109.47055 * 299.99571 * 19 17 16 41 41 H 1.09002 * 109.47015 * 60.00294 * 20 17 16 42 42 H 1.09001 * 109.47228 * 180.02562 * 20 17 16 43 43 H 1.09002 * 109.47010 * 300.00435 * 20 17 16 44 44 H 1.07997 * 120.02833 * 179.74467 * 21 4 3 45 45 H 1.08997 * 109.47794 * 270.28067 * 23 22 21 46 46 H 1.09003 * 109.47410 * 30.28308 * 23 22 21 47 47 H 1.09004 * 109.46973 * 150.27537 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1967 0.0000 4 6 3.5844 1.1961 -0.0005 5 8 4.2657 2.3719 -0.0011 6 6 3.4894 3.5715 0.0258 7 1 2.6112 3.4218 0.6540 8 6 3.0526 3.9186 -1.3740 9 1 2.0038 4.0516 -1.5951 10 6 3.9918 4.0665 -2.3725 11 7 5.2511 3.7666 -2.1405 12 14 3.4756 4.6928 -4.0550 13 1 4.6634 4.7617 -4.9434 14 1 2.4717 3.7684 -4.6407 15 1 2.8811 6.0468 -3.9182 16 6 4.3344 4.7132 0.5943 17 7 4.6248 4.4495 2.0100 18 6 5.4160 3.2173 2.1264 19 6 5.3848 5.5743 2.5717 20 6 3.3641 4.2935 2.7477 21 6 4.2752 -0.0071 -0.0064 22 6 3.5803 -1.2011 -0.0010 23 6 4.3300 -2.5083 -0.0022 24 6 2.1978 -1.1977 -0.0006 25 7 1.4558 -2.4784 -0.0001 26 8 1.1497 -3.0053 -1.0546 27 8 1.1513 -3.0054 1.0550 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6571 2.1320 0.0008 32 1 5.5316 3.5081 -1.2487 33 1 5.2695 4.7846 0.0388 34 1 3.7859 5.6508 0.5045 35 1 6.2436 3.2486 1.4177 36 1 5.8084 3.1318 3.1397 37 1 4.7830 2.3572 1.9081 38 1 4.7977 6.4886 2.4853 39 1 5.5999 5.3789 3.6222 40 1 6.3203 5.6901 2.0244 41 1 2.8002 3.4590 2.3310 42 1 3.5796 4.0983 3.7982 43 1 2.7771 5.2079 2.6613 44 1 5.3551 -0.0102 -0.0110 45 1 4.5104 -2.8229 -1.0301 46 1 5.2830 -2.3812 0.5113 47 1 3.7390 -3.2666 0.5114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229468157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:27 Heat of formation + Delta-G solvation = 85.124697 kcal Electronic energy + Delta-G solvation = -29587.137558 eV Core-core repulsion = 25664.371420 eV Total energy + Delta-G solvation = -3922.766138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42144 -43.04062 -41.20220 -39.05483 -37.65918 -35.59532 -35.13046 -32.74787 -31.46758 -29.74697 -29.68404 -29.59059 -28.43643 -27.54169 -26.65213 -24.98682 -23.40367 -22.84438 -22.02323 -20.23166 -19.93919 -19.85068 -19.03186 -18.89397 -17.98861 -17.80080 -17.66149 -16.78377 -16.23175 -15.81543 -15.56144 -15.36194 -15.13663 -14.69207 -14.53063 -14.43678 -14.38246 -14.29172 -13.99608 -13.57629 -13.53299 -13.40911 -13.35657 -13.25725 -13.21726 -13.09273 -13.00310 -12.88438 -12.81101 -12.61048 -12.36199 -12.31934 -12.23975 -12.12930 -11.74237 -11.04180 -10.75373 -10.08613 -9.58133 -8.68740 -6.67112 -0.70125 -0.32950 -0.13991 0.35484 0.82276 1.47203 1.59947 1.69413 1.95733 2.18681 2.39730 2.69584 2.90493 2.96268 3.12005 3.16412 3.28211 3.57447 3.73187 3.83352 3.90601 3.97305 4.01471 4.07384 4.14158 4.14616 4.19753 4.22709 4.32144 4.36446 4.37051 4.41591 4.46022 4.47781 4.64683 4.70397 4.73202 4.74521 4.75618 4.77856 4.85331 4.91669 5.00447 5.09049 5.34252 5.46327 5.96347 6.26614 6.33369 6.52928 7.12620 8.69560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.001 4.001 3 C -0.195 4.195 4 C 0.202 3.798 5 O -0.308 6.308 6 C 0.164 3.836 7 H 0.088 0.912 8 C -0.638 4.638 9 H 0.059 0.941 10 C 0.030 3.970 11 N -0.898 5.898 12 Si 1.067 2.933 13 H -0.300 1.300 14 H -0.295 1.295 15 H -0.265 1.265 16 C 0.016 3.984 17 N -0.259 5.259 18 C -0.046 4.046 19 C -0.045 4.045 20 C -0.055 4.055 21 C -0.160 4.160 22 C -0.001 4.001 23 C -0.132 4.132 24 C -0.106 4.106 25 N 0.033 4.967 26 O -0.180 6.180 27 O -0.148 6.148 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.164 0.836 32 H 0.289 0.711 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.105 0.895 36 H 0.144 0.856 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.166 0.834 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 10.432 19.855 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.003 4.003 3 C -0.214 4.214 4 C 0.154 3.846 5 O -0.221 6.221 6 C 0.110 3.890 7 H 0.105 0.895 8 C -0.675 4.675 9 H 0.078 0.922 10 C -0.179 4.179 11 N -0.534 5.534 12 Si 0.895 3.105 13 H -0.227 1.227 14 H -0.222 1.222 15 H -0.190 1.190 16 C -0.106 4.106 17 N 0.084 4.916 18 C -0.188 4.188 19 C -0.185 4.185 20 C -0.195 4.195 21 C -0.179 4.179 22 C -0.002 4.002 23 C -0.188 4.188 24 C -0.186 4.186 25 N 0.559 4.441 26 O -0.397 6.397 27 O -0.374 6.374 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.182 0.818 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.183 0.817 45 H 0.105 0.895 46 H 0.134 0.866 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.287 11.493 18.322 22.265 hybrid contribution -1.131 -1.048 0.369 1.586 sum 4.156 10.445 18.691 21.811 Atomic orbital electron populations 1.21074 0.88886 1.04875 1.04090 1.19529 0.97508 0.89736 0.93483 1.21220 0.93572 0.97783 1.08797 1.19022 0.90284 0.86913 0.88417 1.86255 1.38075 1.12657 1.85146 1.20838 0.91061 0.79724 0.97338 0.89453 1.22276 0.95771 1.54523 0.94952 0.92224 1.25956 0.93859 0.92997 1.05135 1.70961 1.17786 1.39015 1.25648 0.83465 0.75184 0.77424 0.74377 1.22673 1.22184 1.18957 1.24217 1.05856 1.02198 0.78316 1.46023 1.15787 1.15833 1.14000 1.24329 0.99355 0.86307 1.08778 1.24282 1.00066 0.89494 1.04689 1.24333 0.85177 1.08873 1.01154 1.20395 1.01631 0.87628 1.08290 1.19467 0.89064 0.97899 0.93815 1.21074 1.01924 0.91588 1.04239 1.20639 0.92329 0.82015 1.23617 1.43840 0.98193 1.02446 0.99616 1.94573 1.57799 1.66196 1.21137 1.94508 1.56314 1.65710 1.20852 0.89758 0.92462 0.86806 0.81829 0.89683 0.86973 0.83119 0.87646 0.83790 0.87647 0.85380 0.83888 0.87022 0.88280 0.83593 0.84808 0.81699 0.89498 0.86626 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.40 9.77 71.23 0.70 0.29 16 2 C 0.00 -0.01 5.88 -19.88 -0.12 -0.12 16 3 C -0.19 -0.44 8.39 22.37 0.19 -0.25 16 4 C 0.20 0.34 6.06 22.51 0.14 0.47 16 5 O -0.31 0.37 4.83 -92.36 -0.45 -0.07 16 6 C 0.16 -0.63 1.37 29.85 0.04 -0.59 16 7 H 0.09 -0.83 3.93 -2.39 -0.01 -0.84 16 8 C -0.64 -6.58 8.07 25.60 0.21 -6.37 16 9 H 0.06 0.79 7.82 -2.91 -0.02 0.76 16 10 C 0.03 0.52 5.22 84.65 0.44 0.97 16 11 N -0.90 -16.99 13.01 21.45 0.28 -16.71 16 12 Si 1.07 18.85 29.91 68.60 2.05 20.91 16 13 H -0.30 -6.59 7.11 99.48 0.71 -5.88 16 14 H -0.30 -5.88 7.11 99.48 0.71 -5.17 16 15 H -0.26 -3.94 7.11 99.48 0.71 -3.23 16 16 C 0.02 -0.22 3.47 86.30 0.30 0.08 16 17 N -0.26 6.86 0.05 ******* -0.07 6.79 16 18 C -0.05 1.12 7.03 127.69 0.90 2.01 16 19 C -0.05 1.44 7.99 127.69 1.02 2.46 16 20 C -0.05 1.61 7.58 127.69 0.97 2.58 16 21 C -0.16 -0.31 9.64 22.37 0.22 -0.09 16 22 C 0.00 -0.01 5.88 -19.88 -0.12 -0.12 16 23 C -0.13 -0.32 9.77 71.24 0.70 0.37 16 24 C -0.11 -0.96 6.09 36.39 0.22 -0.74 16 25 N 0.03 0.43 2.25 -46.44 -0.10 0.33 16 26 O -0.18 -3.09 19.25 18.89 0.36 -2.73 16 27 O -0.15 -2.07 18.99 18.88 0.36 -1.71 16 28 H 0.08 0.36 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.32 7.31 -2.39 -0.02 0.30 16 30 H 0.11 -0.37 8.08 -2.39 -0.02 -0.39 16 31 H 0.16 -0.11 5.70 -2.91 -0.02 -0.12 16 32 H 0.29 3.68 4.67 -92.71 -0.43 3.25 16 33 H 0.11 -0.90 6.04 -2.39 -0.01 -0.91 16 34 H 0.15 -2.52 8.12 -2.39 -0.02 -2.54 16 35 H 0.10 -2.11 7.91 -2.39 -0.02 -2.13 16 36 H 0.14 -4.48 7.96 -2.39 -0.02 -4.50 16 37 H 0.11 -2.03 5.36 -2.39 -0.01 -2.04 16 38 H 0.13 -4.26 8.13 -2.39 -0.02 -4.28 16 39 H 0.14 -5.24 8.05 -2.39 -0.02 -5.26 16 40 H 0.11 -3.29 8.14 -2.39 -0.02 -3.31 16 41 H 0.10 -2.49 5.87 -2.39 -0.01 -2.50 16 42 H 0.15 -5.08 8.14 -2.39 -0.02 -5.10 16 43 H 0.13 -4.25 8.14 -2.39 -0.02 -4.27 16 44 H 0.17 -0.36 8.06 -2.91 -0.02 -0.38 16 45 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.12 -0.42 8.09 -2.39 -0.02 -0.44 16 47 H 0.06 0.30 7.31 -2.38 -0.02 0.28 16 Total: 0.00 -49.91 370.95 9.54 -40.38 By element: Atomic # 1 Polarization: -49.44 SS G_CDS: 1.31 Total: -48.13 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.79 Total: 0.95 kcal Atomic # 7 Polarization: -9.70 SS G_CDS: 0.11 Total: -9.59 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.28 Total: -4.51 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: 2.05 Total: 20.91 kcal Total: -49.91 9.54 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229468157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.502 kcal (2) G-P(sol) polarization free energy of solvation -49.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds