Wall clock time and date at job start Tue Mar 31 2020 13:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36954 * 120.30854 * 2 1 4 4 C 1.40267 * 118.49568 * 179.97438 * 3 2 1 5 5 C 1.47747 * 120.48200 * 179.97438 * 4 3 2 6 6 C 1.39252 * 120.34510 * 309.99807 * 5 4 3 7 7 C 1.38019 * 119.98067 * 179.97438 * 6 5 4 8 8 C 1.38970 * 120.68295 * 0.02562 * 7 6 5 9 9 C 1.36395 * 120.70343 * 359.97438 * 8 7 6 10 10 C 1.40768 * 119.99228 * 359.71321 * 9 8 7 11 11 C 1.40842 * 120.33773 * 180.30110 * 10 9 8 12 12 H 1.08002 * 119.99701 * 150.80414 * 11 10 9 13 13 C 1.40034 * 120.00013 * 330.80314 * 11 10 9 14 14 N 1.30799 * 119.99991 * 349.02000 * 13 11 10 15 15 Si 1.86805 * 119.99794 * 169.01564 * 13 11 10 16 16 H 1.48500 * 109.46831 * 60.00544 * 15 13 11 17 17 H 1.48502 * 109.46835 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46908 * 300.00230 * 15 13 11 19 19 C 1.39630 * 119.03744 * 0.24846 * 4 3 2 20 20 N 1.31722 * 120.50306 * 359.47681 * 19 4 3 21 21 C 1.32566 * 121.64214 * 0.53873 * 20 19 4 22 22 N 1.38735 * 119.53385 * 179.69883 * 21 20 19 23 23 C 1.46959 * 111.00116 * 273.37535 * 22 21 20 24 24 C 1.53055 * 109.36112 * 183.18808 * 23 22 21 25 25 N 1.46958 * 109.36698 * 301.60022 * 24 23 22 26 26 C 1.46954 * 110.87762 * 59.31927 * 25 24 23 27 27 C 1.46958 * 110.99975 * 37.17760 * 22 21 20 28 28 H 1.08998 * 109.46709 * 85.45291 * 1 2 3 29 29 H 1.09000 * 109.47169 * 205.44853 * 1 2 3 30 30 H 1.08997 * 109.46823 * 325.45271 * 1 2 3 31 31 H 1.07999 * 120.75380 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00977 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.65428 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.64412 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.00700 * 180.02562 * 9 8 7 36 36 H 0.97003 * 119.99655 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.74429 * 179.72764 * 19 4 3 38 38 H 1.08993 * 109.49010 * 303.15237 * 23 22 21 39 39 H 1.09000 * 109.48569 * 63.22473 * 23 22 21 40 40 H 1.08999 * 109.48628 * 181.62708 * 24 23 22 41 41 H 1.08997 * 109.50495 * 61.57731 * 24 23 22 42 42 H 1.00903 * 110.99374 * 295.45329 * 25 24 23 43 43 H 1.09005 * 109.48641 * 180.71329 * 26 25 24 44 44 H 1.09003 * 109.50796 * 60.66397 * 26 25 24 45 45 H 1.09003 * 109.48492 * 296.77643 * 27 22 21 46 46 H 1.08998 * 109.48731 * 56.84286 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1824 0.0000 4 6 3.6001 1.1380 0.0006 5 6 4.3895 2.3869 0.0000 6 6 4.1128 3.3937 -0.9214 7 6 4.8546 4.5575 -0.9148 8 6 5.8809 4.7392 0.0044 9 6 6.1758 3.7715 0.9193 10 6 5.4334 2.5757 0.9428 11 6 5.7275 1.5742 1.8884 12 1 4.9464 0.9155 2.2380 13 6 7.0329 1.4327 2.3753 14 7 8.0174 2.0769 1.8040 15 14 7.3679 0.3239 3.8409 16 1 6.9537 -1.0646 3.5159 17 1 8.8186 0.3470 4.1576 18 1 6.5977 0.8085 5.0144 19 6 4.2389 -0.1036 -0.0042 20 7 3.5356 -1.2174 0.0012 21 6 2.2100 -1.2028 0.0007 22 7 1.5130 -2.4024 0.0002 23 6 1.3188 -2.8981 -1.3696 24 6 0.4796 -4.1775 -1.3319 25 7 1.1598 -5.1822 -0.5028 26 6 1.3540 -4.6864 0.8669 27 6 2.1932 -3.4071 0.8294 28 1 -0.3633 0.0815 -1.0244 29 1 -0.3633 -0.9279 0.4416 30 1 -0.3633 0.8464 0.5828 31 1 1.6756 2.1275 -0.0004 32 1 3.3174 3.2641 -1.6404 33 1 4.6357 5.3347 -1.6321 34 1 6.4509 5.6565 -0.0057 35 1 6.9755 3.9247 1.6288 36 1 8.9216 1.9791 2.1415 37 1 5.3179 -0.1511 -0.0083 38 1 0.8021 -2.1417 -1.9602 39 1 2.2881 -3.1121 -1.8197 40 1 0.3586 -4.5629 -2.3443 41 1 -0.4998 -3.9580 -0.9070 42 1 2.0384 -5.4571 -0.9159 43 1 1.8706 -5.4429 1.4577 44 1 0.3848 -4.4725 1.3175 45 1 3.1725 -3.6268 0.4041 46 1 2.3140 -3.0216 1.8417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239733681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:55 Heat of formation + Delta-G solvation = 60.952038 kcal Electronic energy + Delta-G solvation = -27140.726048 eV Core-core repulsion = 23608.283547 eV Total energy + Delta-G solvation = -3532.442501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.43201 -38.62903 -37.41266 -34.36273 -33.83433 -33.18857 -31.50795 -30.98621 -29.72652 -28.17569 -26.87399 -25.52474 -25.01119 -23.47738 -22.52074 -21.78639 -20.94924 -20.34595 -19.55112 -17.47882 -17.25770 -16.20131 -15.68492 -15.30576 -15.08406 -14.97398 -14.69663 -14.26867 -14.12264 -13.91074 -13.66088 -13.22380 -13.07419 -12.76877 -12.66489 -12.46428 -12.28749 -12.12623 -12.05012 -11.80351 -11.54698 -11.31821 -11.28241 -11.22295 -11.17723 -11.07839 -10.77827 -10.56053 -9.83528 -9.69288 -9.34515 -9.31563 -9.03377 -8.63752 -8.49437 -8.07355 -7.50590 -7.25123 -6.85197 -4.51021 1.54810 1.89065 2.70174 2.90689 2.99850 3.03881 3.14815 3.73747 3.84103 4.16999 4.33453 4.52803 4.90073 5.01184 5.08611 5.17135 5.20508 5.27570 5.36176 5.41769 5.51380 5.57365 5.63181 5.70750 5.77847 5.84361 5.88605 5.95054 5.99882 6.08132 6.09104 6.19619 6.31985 6.50558 6.52358 6.71203 6.77522 6.85645 6.94639 7.01281 7.05178 7.09348 7.19420 7.24697 7.43679 7.62467 7.75858 7.89246 7.96104 8.12038 8.46112 8.56102 8.71726 8.79945 10.04866 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004160 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.024113 B = 6729.847243 C = 8372.738689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.023 4.023 5 C -0.187 4.187 6 C -0.071 4.071 7 C -0.239 4.239 8 C -0.102 4.102 9 C -0.152 4.152 10 C 0.133 3.867 11 C -0.452 4.452 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.906 3.094 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.263 1.263 19 C 0.122 3.878 20 N -0.512 5.512 21 C 0.249 3.751 22 N -0.471 5.471 23 C 0.023 3.977 24 C 0.061 3.939 25 N -0.687 5.687 26 C 0.059 3.941 27 C 0.024 3.976 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.283 0.717 37 H 0.160 0.840 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.339 0.661 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -7.840 -2.925 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.025 4.025 5 C -0.189 4.189 6 C -0.089 4.089 7 C -0.258 4.258 8 C -0.120 4.120 9 C -0.171 4.171 10 C 0.130 3.870 11 C -0.481 4.481 12 H 0.097 0.903 13 C -0.141 4.141 14 N -0.416 5.416 15 Si 0.730 3.270 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.037 4.037 20 N -0.223 5.223 21 C 0.020 3.980 22 N -0.194 5.194 23 C -0.106 4.106 24 C -0.069 4.069 25 N -0.315 5.315 26 C -0.071 4.071 27 C -0.105 4.105 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.094 0.906 37 H 0.177 0.823 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.156 0.844 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.480 -8.936 -2.551 14.006 hybrid contribution 1.558 1.085 0.205 1.910 sum -8.921 -7.850 -2.346 12.113 Atomic orbital electron populations 1.20573 0.90745 1.02850 1.01364 1.19973 0.96910 0.92045 1.02901 1.21299 0.93647 0.97411 0.99230 1.19788 0.92398 0.94810 0.95519 1.18481 1.04722 0.93765 1.01941 1.20552 0.97840 0.93360 0.97157 1.20300 1.02358 0.98735 1.04409 1.20521 0.96991 0.98022 0.96479 1.21108 1.02393 0.93007 1.00630 1.17531 0.88437 0.91635 0.89375 1.19485 0.94483 1.14050 1.20072 0.90347 1.25904 0.95902 0.95625 0.96713 1.69762 1.01083 1.35037 1.35757 0.86369 0.77984 0.81020 0.81580 1.18729 1.20144 1.18766 1.22871 1.00089 0.86127 0.94572 1.67591 1.07616 1.32930 1.14146 1.19419 0.87562 0.90141 1.00831 1.59914 1.46291 1.02086 1.11063 1.22864 0.99890 0.98727 0.89070 1.22108 0.98093 0.88794 0.97880 1.60782 1.27900 1.39695 1.03168 1.22143 1.00468 0.94009 0.90479 1.22729 0.96587 0.92727 0.98469 0.92209 0.90513 0.92264 0.85490 0.89267 0.89296 0.89326 0.86101 0.90576 0.82262 0.90269 0.94200 0.90247 0.89979 0.84416 0.90238 0.90175 0.92907 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.82 36.01 0.35 -0.92 16 2 C -0.11 -1.92 5.88 -104.68 -0.62 -2.53 16 3 C -0.09 -1.66 9.31 -39.28 -0.37 -2.02 16 4 C -0.02 -0.49 4.93 -104.73 -0.52 -1.00 16 5 C -0.19 -4.30 5.54 -104.23 -0.58 -4.88 16 6 C -0.07 -1.53 9.53 -39.29 -0.37 -1.90 16 7 C -0.24 -5.11 10.03 -39.39 -0.40 -5.51 16 8 C -0.10 -2.28 9.96 -39.97 -0.40 -2.68 16 9 C -0.15 -3.76 8.60 -39.29 -0.34 -4.09 16 10 C 0.13 3.32 5.55 -106.55 -0.59 2.73 16 11 C -0.45 -11.27 7.08 -37.92 -0.27 -11.54 16 12 H 0.08 1.97 6.80 -52.49 -0.36 1.62 16 13 C 0.08 1.84 5.25 -17.32 -0.09 1.75 16 14 N -0.79 -19.41 10.88 55.55 0.60 -18.80 16 15 Si 0.91 18.40 29.57 -169.99 -5.03 13.38 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 19 C 0.12 2.60 9.28 -17.08 -0.16 2.44 16 20 N -0.51 -10.09 9.18 -12.07 -0.11 -10.20 16 21 C 0.25 4.34 5.57 -155.07 -0.86 3.48 16 22 N -0.47 -6.76 3.53 -173.02 -0.61 -7.38 16 23 C 0.02 0.28 5.54 -3.76 -0.02 0.26 16 24 C 0.06 0.61 6.72 -3.76 -0.03 0.58 16 25 N -0.69 -7.08 6.91 -113.63 -0.79 -7.86 16 26 C 0.06 0.63 6.72 -3.77 -0.03 0.61 16 27 C 0.02 0.33 5.13 -3.77 -0.02 0.31 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 30 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 31 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.09 1.72 8.05 -52.49 -0.42 1.29 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.12 3.07 6.26 -52.49 -0.33 2.74 16 36 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 37 H 0.16 3.59 7.36 -52.49 -0.39 3.21 16 38 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.34 3.30 8.89 -39.29 -0.35 2.95 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.80 7.69 -51.93 -0.40 0.41 16 46 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -26.15 369.88 -12.47 -38.62 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.83 Total: 11.58 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -5.29 Total: -24.91 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.90 Total: -44.24 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.15 -12.47 -38.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239733681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.576 kcal (2) G-P(sol) polarization free energy of solvation -26.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds