Wall clock time and date at job start Tue Mar 31 2020 13:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36954 * 120.30854 * 2 1 4 4 C 1.40267 * 118.49568 * 179.97438 * 3 2 1 5 5 C 1.47747 * 120.48200 * 179.97438 * 4 3 2 6 6 C 1.39252 * 120.34510 * 309.99807 * 5 4 3 7 7 C 1.38019 * 119.98067 * 179.97438 * 6 5 4 8 8 C 1.38970 * 120.68295 * 0.02562 * 7 6 5 9 9 C 1.36395 * 120.70343 * 359.97438 * 8 7 6 10 10 C 1.40768 * 119.99228 * 359.71321 * 9 8 7 11 11 C 1.40842 * 120.33773 * 180.30110 * 10 9 8 12 12 H 1.08002 * 119.99701 * 150.80414 * 11 10 9 13 13 C 1.40034 * 120.00013 * 330.80314 * 11 10 9 14 14 N 1.30799 * 119.99991 * 349.02000 * 13 11 10 15 15 Si 1.86805 * 119.99794 * 169.01564 * 13 11 10 16 16 H 1.48500 * 109.46831 * 60.00544 * 15 13 11 17 17 H 1.48502 * 109.46835 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46908 * 300.00230 * 15 13 11 19 19 C 1.39630 * 119.03744 * 0.24846 * 4 3 2 20 20 N 1.31722 * 120.50306 * 359.47681 * 19 4 3 21 21 C 1.32566 * 121.64214 * 0.53873 * 20 19 4 22 22 N 1.38735 * 119.53385 * 179.69883 * 21 20 19 23 23 C 1.46959 * 111.00116 * 273.37535 * 22 21 20 24 24 C 1.53055 * 109.36112 * 183.18808 * 23 22 21 25 25 N 1.46958 * 109.36698 * 301.60022 * 24 23 22 26 26 C 1.46954 * 110.87762 * 59.31927 * 25 24 23 27 27 C 1.46958 * 110.99975 * 37.17760 * 22 21 20 28 28 H 1.08998 * 109.46709 * 85.45291 * 1 2 3 29 29 H 1.09000 * 109.47169 * 205.44853 * 1 2 3 30 30 H 1.08997 * 109.46823 * 325.45271 * 1 2 3 31 31 H 1.07999 * 120.75380 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00977 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.65428 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.64412 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.00700 * 180.02562 * 9 8 7 36 36 H 0.97003 * 119.99655 * 179.97438 * 14 13 11 37 37 H 1.07999 * 119.74429 * 179.72764 * 19 4 3 38 38 H 1.08993 * 109.49010 * 303.15237 * 23 22 21 39 39 H 1.09000 * 109.48569 * 63.22473 * 23 22 21 40 40 H 1.08999 * 109.48628 * 181.62708 * 24 23 22 41 41 H 1.08997 * 109.50495 * 61.57731 * 24 23 22 42 42 H 1.00903 * 110.99374 * 295.45329 * 25 24 23 43 43 H 1.09005 * 109.48641 * 180.71329 * 26 25 24 44 44 H 1.09003 * 109.50796 * 60.66397 * 26 25 24 45 45 H 1.09003 * 109.48492 * 296.77643 * 27 22 21 46 46 H 1.08998 * 109.48731 * 56.84286 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1824 0.0000 4 6 3.6001 1.1380 0.0006 5 6 4.3895 2.3869 0.0000 6 6 4.1128 3.3937 -0.9214 7 6 4.8546 4.5575 -0.9148 8 6 5.8809 4.7392 0.0044 9 6 6.1758 3.7715 0.9193 10 6 5.4334 2.5757 0.9428 11 6 5.7275 1.5742 1.8884 12 1 4.9464 0.9155 2.2380 13 6 7.0329 1.4327 2.3753 14 7 8.0174 2.0769 1.8040 15 14 7.3679 0.3239 3.8409 16 1 6.9537 -1.0646 3.5159 17 1 8.8186 0.3470 4.1576 18 1 6.5977 0.8085 5.0144 19 6 4.2389 -0.1036 -0.0042 20 7 3.5356 -1.2174 0.0012 21 6 2.2100 -1.2028 0.0007 22 7 1.5130 -2.4024 0.0002 23 6 1.3188 -2.8981 -1.3696 24 6 0.4796 -4.1775 -1.3319 25 7 1.1598 -5.1822 -0.5028 26 6 1.3540 -4.6864 0.8669 27 6 2.1932 -3.4071 0.8294 28 1 -0.3633 0.0815 -1.0244 29 1 -0.3633 -0.9279 0.4416 30 1 -0.3633 0.8464 0.5828 31 1 1.6756 2.1275 -0.0004 32 1 3.3174 3.2641 -1.6404 33 1 4.6357 5.3347 -1.6321 34 1 6.4509 5.6565 -0.0057 35 1 6.9755 3.9247 1.6288 36 1 8.9216 1.9791 2.1415 37 1 5.3179 -0.1511 -0.0083 38 1 0.8021 -2.1417 -1.9602 39 1 2.2881 -3.1121 -1.8197 40 1 0.3586 -4.5629 -2.3443 41 1 -0.4998 -3.9580 -0.9070 42 1 2.0384 -5.4571 -0.9159 43 1 1.8706 -5.4429 1.4577 44 1 0.3848 -4.4725 1.3175 45 1 3.1725 -3.6268 0.4041 46 1 2.3140 -3.0216 1.8417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239733681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:54 Heat of formation + Delta-G solvation = 47.726257 kcal Electronic energy + Delta-G solvation = -27141.299561 eV Core-core repulsion = 23608.283547 eV Total energy + Delta-G solvation = -3533.016014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78191 -39.95870 -38.97008 -35.62797 -35.53702 -34.57645 -33.01324 -31.95106 -31.50536 -29.73228 -28.09877 -27.23126 -26.33027 -24.47075 -23.81923 -23.34233 -22.64983 -21.43574 -21.14252 -19.22874 -18.53922 -17.65392 -17.38793 -16.67257 -16.35082 -16.15457 -15.84456 -15.63558 -15.34266 -15.29996 -15.11282 -14.58338 -14.54655 -14.41736 -14.03653 -13.72970 -13.61643 -13.44198 -13.34842 -13.23511 -12.99929 -12.87301 -12.82996 -12.48785 -12.28930 -12.23137 -12.20413 -12.02507 -11.56717 -11.40922 -11.14187 -10.79005 -10.48115 -9.97183 -9.60641 -9.42337 -9.31012 -8.92197 -8.62472 -6.37418 0.03012 0.40304 0.96793 1.15002 1.30897 1.40066 1.46429 2.13760 2.55656 2.71211 2.83562 3.31702 3.57566 3.67340 3.97352 3.99724 4.09806 4.12111 4.16390 4.19916 4.28393 4.37266 4.39947 4.44580 4.56560 4.59446 4.63535 4.75040 4.82608 4.87199 4.89086 4.90366 5.03944 5.08395 5.13750 5.24292 5.28643 5.35190 5.38660 5.51094 5.63100 5.65282 5.76523 5.97790 5.98143 6.06201 6.15341 6.27119 6.32998 6.37901 6.64009 6.88225 6.97035 7.05981 8.28012 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004160 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.024113 B = 6729.847243 C = 8372.738689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.110 4.110 3 C -0.086 4.086 4 C -0.046 4.046 5 C -0.189 4.189 6 C -0.077 4.077 7 C -0.234 4.234 8 C -0.107 4.107 9 C -0.179 4.179 10 C 0.103 3.897 11 C -0.474 4.474 12 H 0.064 0.936 13 C 0.042 3.958 14 N -0.822 5.822 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.263 1.263 18 H -0.261 1.261 19 C 0.106 3.894 20 N -0.527 5.527 21 C 0.250 3.750 22 N -0.465 5.465 23 C 0.025 3.975 24 C 0.069 3.931 25 N -0.686 5.686 26 C 0.070 3.930 27 C 0.026 3.974 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.288 0.712 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.022 0.978 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.342 0.658 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 -8.603 -3.773 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.112 4.112 4 C -0.049 4.049 5 C -0.192 4.192 6 C -0.095 4.095 7 C -0.253 4.253 8 C -0.125 4.125 9 C -0.198 4.198 10 C 0.100 3.900 11 C -0.504 4.504 12 H 0.082 0.918 13 C -0.173 4.173 14 N -0.448 5.448 15 Si 0.787 3.213 16 H -0.194 1.194 17 H -0.187 1.187 18 H -0.186 1.186 19 C -0.052 4.052 20 N -0.239 5.239 21 C 0.021 3.979 22 N -0.187 5.187 23 C -0.104 4.104 24 C -0.061 4.061 25 N -0.314 5.314 26 C -0.060 4.060 27 C -0.103 4.103 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.040 0.960 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.160 0.840 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.050 0.950 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.394 -9.692 -3.411 16.880 hybrid contribution 2.310 1.285 0.341 2.666 sum -11.083 -8.406 -3.070 14.245 Atomic orbital electron populations 1.20629 0.87389 1.03797 1.03060 1.20406 0.99163 0.90967 1.00865 1.21491 0.92399 0.98951 0.98334 1.19756 0.93695 0.93790 0.97624 1.18790 1.04068 0.94885 1.01412 1.20888 0.98534 0.93000 0.97095 1.20703 1.01145 0.99356 1.04067 1.20809 0.97454 0.98283 0.95977 1.21088 1.02912 0.94030 1.01793 1.17843 0.89754 0.91984 0.90374 1.19461 0.94812 1.14602 1.21491 0.91808 1.26531 0.95392 0.96732 0.98659 1.69809 1.01455 1.36515 1.36980 0.85490 0.78427 0.78768 0.78593 1.19413 1.18655 1.18561 1.22462 0.99077 0.87075 0.96543 1.67563 1.09083 1.32412 1.14814 1.19944 0.86938 0.92028 0.99024 1.60073 1.44925 1.01309 1.12386 1.22974 0.99592 1.00271 0.87522 1.22154 0.97543 0.87219 0.99145 1.60813 1.28133 1.39444 1.02985 1.22096 1.00156 0.92549 0.91186 1.22754 0.96420 0.93967 0.97193 0.89995 0.89954 0.90873 0.83631 0.86552 0.86024 0.87072 0.87832 0.90090 0.85156 0.89531 0.95992 0.88045 0.89231 0.84033 0.88849 0.89585 0.94988 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 9.82 71.24 0.70 -1.35 16 2 C -0.11 -3.50 5.88 -19.90 -0.12 -3.61 16 3 C -0.09 -3.07 9.31 22.46 0.21 -2.86 16 4 C -0.05 -2.00 4.93 -19.93 -0.10 -2.10 16 5 C -0.19 -8.92 5.54 -19.61 -0.11 -9.03 16 6 C -0.08 -3.24 9.53 22.46 0.21 -3.03 16 7 C -0.23 -9.63 10.03 22.39 0.22 -9.41 16 8 C -0.11 -4.79 9.96 22.01 0.22 -4.57 16 9 C -0.18 -9.17 8.60 22.46 0.19 -8.98 16 10 C 0.10 5.39 5.55 -21.11 -0.12 5.27 16 11 C -0.47 -25.12 7.08 23.34 0.17 -24.96 16 12 H 0.06 3.44 6.80 -2.91 -0.02 3.42 16 13 C 0.04 2.12 5.25 85.28 0.45 2.56 16 14 N -0.82 -42.34 10.88 21.84 0.24 -42.10 16 15 Si 0.97 39.40 29.57 68.60 2.03 41.43 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 C 0.11 4.75 9.28 85.05 0.79 5.54 16 20 N -0.53 -21.46 9.18 -192.10 -1.76 -23.22 16 21 C 0.25 8.58 5.57 133.15 0.74 9.33 16 22 N -0.46 -12.66 3.53 -701.31 -2.48 -15.14 16 23 C 0.02 0.55 5.54 86.31 0.48 1.03 16 24 C 0.07 1.15 6.72 86.31 0.58 1.73 16 25 N -0.69 -12.32 6.91 -513.43 -3.55 -15.87 16 26 C 0.07 1.36 6.72 86.31 0.58 1.94 16 27 C 0.03 0.70 5.13 86.31 0.44 1.14 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.79 7.32 -2.39 -0.02 1.77 16 30 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 31 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.12 4.20 8.05 -2.91 -0.02 4.17 16 33 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.10 5.57 6.26 -2.91 -0.02 5.55 16 36 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 37 H 0.13 6.46 7.36 -2.91 -0.02 6.44 16 38 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 39 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.34 5.96 8.89 -89.69 -0.80 5.16 16 43 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.03 0.99 7.69 -2.39 -0.02 0.97 16 46 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 Total: -1.00 -59.60 369.88 0.21 -59.39 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.19 Total: 36.86 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 5.54 Total: -41.33 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -7.55 Total: -96.34 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -59.60 0.21 -59.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239733681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.117 kcal (2) G-P(sol) polarization free energy of solvation -59.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds