Wall clock time and date at job start Tue Mar 31 2020 14:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 111.00173 * 2 1 4 4 C 1.53051 * 109.36820 * 183.18795 * 3 2 1 5 5 N 1.46957 * 109.36354 * 301.59882 * 4 3 2 6 6 C 1.39684 * 111.00193 * 183.19065 * 5 4 3 7 7 C 1.39098 * 119.99740 * 359.96916 * 6 5 4 8 8 C 1.38253 * 120.22622 * 180.02562 * 7 6 5 9 9 C 1.37983 * 120.22934 * 0.02562 * 8 7 6 10 10 C 1.39701 * 119.99736 * 359.74498 * 9 8 7 11 11 C 1.47855 * 120.11335 * 180.25351 * 10 9 8 12 12 C 1.39298 * 120.77848 * 130.00332 * 11 10 9 13 13 N 1.31685 * 120.66025 * 179.70422 * 12 11 10 14 14 C 1.32204 * 122.50128 * 0.58680 * 13 12 11 15 15 C 1.36485 * 121.50639 * 359.70176 * 14 13 12 16 16 C 1.41119 * 119.10809 * 359.97438 * 15 14 13 17 17 C 1.40930 * 121.10749 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99781 * 154.56305 * 17 16 15 19 19 C 1.40180 * 120.00086 * 334.56227 * 17 16 15 20 20 N 1.30680 * 119.99765 * 344.38030 * 19 17 16 21 21 Si 1.86796 * 119.99813 * 164.38143 * 19 17 16 22 22 H 1.48505 * 109.46945 * 89.99943 * 21 19 17 23 23 H 1.48495 * 109.46943 * 209.99869 * 21 19 17 24 24 H 1.48493 * 109.47483 * 330.00223 * 21 19 17 25 25 C 1.38583 * 120.00226 * 180.02562 * 6 5 4 26 26 C 1.46960 * 110.88100 * 59.31419 * 5 4 3 27 27 C 1.46957 * 110.99977 * 123.79882 * 2 1 3 28 28 H 1.09004 * 109.46895 * 60.00467 * 1 2 3 29 29 H 1.09003 * 109.46817 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47365 * 300.00129 * 1 2 3 31 31 H 1.08993 * 109.49187 * 63.21588 * 3 2 1 32 32 H 1.09001 * 109.50590 * 303.16305 * 3 2 1 33 33 H 1.09000 * 109.48966 * 181.62899 * 4 3 2 34 34 H 1.08998 * 109.48953 * 61.55933 * 4 3 2 35 35 H 1.07999 * 119.88614 * 0.02864 * 7 6 5 36 36 H 1.08003 * 119.88208 * 179.97438 * 8 7 6 37 37 H 1.08007 * 120.00121 * 180.02562 * 9 8 7 38 38 H 1.07997 * 119.67176 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.24266 * 179.72601 * 14 13 12 40 40 H 1.08003 * 120.44812 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99997 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.11286 * 359.97438 * 25 6 5 43 43 H 1.09001 * 109.48480 * 60.65258 * 26 5 4 44 44 H 1.09000 * 109.48692 * 180.71043 * 26 5 4 45 45 H 1.09006 * 109.48561 * 296.78074 * 27 2 1 46 46 H 1.08990 * 109.49155 * 56.84272 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.4469 0.5660 1.0599 7 6 6.1424 1.2356 0.0585 8 6 7.5249 1.2383 0.0538 9 6 8.2243 0.5763 1.0419 10 6 7.5354 -0.0953 2.0549 11 6 8.2823 -0.8008 3.1182 12 6 7.9787 -0.5915 4.4615 13 7 8.6415 -1.2255 5.4064 14 6 9.6218 -2.0718 5.1409 15 6 10.0020 -2.3433 3.8585 16 6 9.3310 -1.7049 2.7938 17 6 9.6886 -1.9546 1.4536 18 1 8.9626 -1.8156 0.6662 19 6 10.9865 -2.3833 1.1427 20 7 11.9433 -2.2626 2.0246 21 14 11.3483 -3.1271 -0.5321 22 1 11.7447 -2.0515 -1.4762 23 1 12.4545 -4.1100 -0.4087 24 1 10.1332 -3.8110 -1.0430 25 6 6.1398 -0.1021 2.0569 26 6 3.5234 -0.8060 1.0599 27 6 1.9956 -0.7632 1.1401 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6937 1.8774 0.9172 32 1 1.6014 1.9132 -0.8601 33 1 3.9178 2.3449 -0.0513 34 1 3.8254 0.8479 -1.0105 35 1 5.6005 1.7553 -0.7178 36 1 8.0593 1.7597 -0.7267 37 1 9.3044 0.5811 1.0349 38 1 7.1889 0.0942 4.7305 39 1 10.1332 -2.5597 5.9575 40 1 10.8050 -3.0381 3.6611 41 1 12.8413 -2.5597 1.8096 42 1 5.6017 -0.6230 2.8351 43 1 3.8253 -1.3115 0.1426 44 1 3.9177 -1.3469 1.9201 45 1 1.6936 -0.2820 2.0704 46 1 1.6013 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243670358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:03 Heat of formation + Delta-G solvation = 52.466447 kcal Electronic energy + Delta-G solvation = -26807.722766 eV Core-core repulsion = 23274.912302 eV Total energy + Delta-G solvation = -3532.810463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33202 -40.29707 -38.92771 -36.42299 -35.99008 -33.55277 -32.38017 -31.95255 -31.21917 -29.85878 -28.17693 -27.86123 -25.33397 -24.89331 -23.83586 -23.41820 -22.29228 -21.69776 -20.55771 -19.51858 -18.34259 -17.43889 -16.78144 -16.66421 -16.36487 -16.24754 -16.05900 -16.00753 -15.62684 -15.56111 -15.23106 -14.68226 -14.49780 -14.43007 -14.14745 -14.07327 -13.50244 -13.43690 -13.23597 -13.10141 -12.92717 -12.79431 -12.61256 -12.47857 -12.27845 -12.18056 -12.01684 -11.92985 -11.76064 -11.52733 -11.27277 -10.60166 -10.18697 -9.90466 -9.73744 -9.36058 -9.14538 -8.75850 -8.62262 -6.53317 0.28034 0.61928 0.96598 1.09534 1.36773 1.48299 1.54625 2.15094 2.67525 2.73623 2.94646 3.07592 3.70909 3.80034 3.93075 3.99952 4.02335 4.14272 4.21442 4.26622 4.33642 4.37741 4.50075 4.52882 4.61579 4.62362 4.65012 4.69605 4.79438 4.80873 4.84422 4.92533 4.98768 4.99664 5.02974 5.06701 5.18641 5.24661 5.34836 5.45401 5.51864 5.67632 5.77903 5.90402 5.97101 6.03560 6.07562 6.13249 6.19050 6.44289 6.51799 6.76617 6.80425 7.69685 8.19046 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003479 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.934569 B = 8046.166020 C = 8939.054099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.059 3.941 4 C 0.052 3.948 5 N -0.495 5.495 6 C 0.107 3.893 7 C -0.182 4.182 8 C -0.096 4.096 9 C -0.138 4.138 10 C 0.021 3.979 11 C -0.238 4.238 12 C 0.119 3.881 13 N -0.590 5.590 14 C 0.077 3.923 15 C -0.231 4.231 16 C 0.118 3.882 17 C -0.456 4.456 18 H 0.082 0.918 19 C 0.042 3.958 20 N -0.806 5.806 21 Si 0.977 3.023 22 H -0.258 1.258 23 H -0.263 1.263 24 H -0.260 1.260 25 C -0.150 4.150 26 C 0.060 3.940 27 C 0.062 3.938 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.294 0.706 42 H 0.113 0.887 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 4.655 -8.828 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.069 4.069 4 C -0.075 4.075 5 N -0.211 5.211 6 C 0.010 3.990 7 C -0.203 4.203 8 C -0.114 4.114 9 C -0.157 4.157 10 C 0.019 3.981 11 C -0.243 4.243 12 C -0.038 4.038 13 N -0.305 5.305 14 C -0.071 4.071 15 C -0.253 4.253 16 C 0.110 3.890 17 C -0.486 4.486 18 H 0.100 0.900 19 C -0.176 4.176 20 N -0.431 5.431 21 Si 0.797 3.203 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.184 1.184 25 C -0.171 4.171 26 C -0.066 4.066 27 C -0.066 4.066 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.121 0.879 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.883 4.728 -7.863 18.343 hybrid contribution 1.035 -0.571 -0.868 1.467 sum -14.848 4.157 -8.731 17.720 Atomic orbital electron populations 1.22392 0.85548 1.02856 1.01343 1.62192 1.09343 1.14146 1.42681 1.22218 0.93305 0.89404 1.01932 1.22418 0.95105 0.98977 0.90983 1.59331 1.04274 1.14718 1.42804 1.18784 0.88315 0.97565 0.94317 1.21425 0.94361 1.05358 0.99114 1.21108 0.94155 0.98217 0.97953 1.21235 0.99548 0.99136 0.95812 1.18505 0.92086 0.93959 0.93508 1.19840 1.05641 1.05230 0.93577 1.22431 0.96778 0.96230 0.88351 1.67376 1.11780 1.13991 1.37361 1.22050 0.93965 0.95398 0.95672 1.21914 1.05084 1.05063 0.93281 1.18106 0.88920 0.87648 0.94309 1.19709 0.97106 1.38711 0.93035 0.89998 1.26807 0.95148 0.92732 1.02957 1.69777 1.02780 1.33072 1.37430 0.85262 0.79022 0.79036 0.76959 1.18258 1.18760 1.18427 1.20811 0.92611 1.03982 0.99687 1.22277 0.95379 0.87516 1.01385 1.22148 0.92823 0.99552 0.92073 0.90123 0.90661 0.95348 0.94278 0.87939 0.88631 0.93091 0.83495 0.84144 0.87949 0.84229 0.84127 0.86593 0.89474 0.86907 0.94126 0.90416 0.94127 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.60 127.69 1.23 1.57 16 2 N -0.56 -10.28 4.97 -921.97 -4.58 -14.86 16 3 C 0.06 1.03 5.62 86.31 0.49 1.52 16 4 C 0.05 1.09 4.29 86.31 0.37 1.46 16 5 N -0.50 -13.26 4.75 -694.91 -3.30 -16.57 16 6 C 0.11 3.43 5.63 38.18 0.22 3.64 16 7 C -0.18 -5.36 8.82 22.48 0.20 -5.16 16 8 C -0.10 -3.12 10.02 22.21 0.22 -2.90 16 9 C -0.14 -5.63 8.06 22.56 0.18 -5.44 16 10 C 0.02 0.90 5.00 -20.06 -0.10 0.80 16 11 C -0.24 -11.65 5.54 -19.49 -0.11 -11.76 16 12 C 0.12 5.67 10.71 84.97 0.91 6.58 16 13 N -0.59 -29.19 10.32 -196.20 -2.02 -31.22 16 14 C 0.08 3.79 11.09 84.23 0.93 4.72 16 15 C -0.23 -12.07 8.72 22.57 0.20 -11.88 16 16 C 0.12 6.23 5.59 -20.93 -0.12 6.12 16 17 C -0.46 -23.24 7.28 23.40 0.17 -23.07 16 18 H 0.08 4.14 6.69 -2.91 -0.02 4.12 16 19 C 0.04 2.00 5.21 85.34 0.44 2.44 16 20 N -0.81 -39.72 10.95 21.86 0.24 -39.48 16 21 Si 0.98 36.19 29.59 68.60 2.03 38.22 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 C -0.15 -5.68 8.69 22.67 0.20 -5.48 16 26 C 0.06 1.53 5.38 86.31 0.46 1.99 16 27 C 0.06 1.25 5.62 86.31 0.49 1.73 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.80 7.17 -2.39 -0.02 1.78 16 34 H 0.05 1.10 7.58 -2.39 -0.02 1.08 16 35 H 0.15 3.37 5.79 -2.91 -0.02 3.35 16 36 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.10 4.59 7.34 -2.91 -0.02 4.57 16 38 H 0.14 5.94 8.05 -2.91 -0.02 5.92 16 39 H 0.14 6.01 8.06 -2.91 -0.02 5.98 16 40 H 0.12 6.15 6.27 -2.91 -0.02 6.13 16 41 H 0.29 13.01 8.29 -92.71 -0.77 12.24 16 42 H 0.11 4.23 7.18 -2.91 -0.02 4.21 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 2.10 6.81 -2.39 -0.02 2.09 16 45 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.09 1.64 8.13 -2.39 -0.02 1.62 16 Total: -1.00 -59.90 365.17 -0.28 -60.19 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.98 Total: 36.83 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 6.38 Total: -33.11 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -9.67 Total: -102.12 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -59.90 -0.28 -60.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243670358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.653 kcal (2) G-P(sol) polarization free energy of solvation -59.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds