Wall clock time and date at job start Tue Mar 31 2020 13:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32126 * 122.71214 * 2 1 4 4 C 1.29683 * 116.86909 * 179.97438 * 3 2 1 5 5 N 1.38606 * 124.94782 * 179.97438 * 4 3 2 6 6 C 1.46845 * 111.00163 * 0.02562 * 5 4 3 7 7 C 1.53042 * 109.52503 * 185.83923 * 6 5 4 8 8 C 1.53117 * 109.27779 * 300.82623 * 7 6 5 9 9 C 1.53113 * 109.21724 * 57.61913 * 8 7 6 10 10 C 1.46849 * 110.99877 * 124.23877 * 5 4 3 11 11 S 1.70965 * 110.10048 * 0.24596 * 4 3 2 12 12 C 1.33332 * 122.71197 * 179.97438 * 2 1 3 13 13 C 1.50697 * 125.95028 * 0.02562 * 12 2 1 14 14 N 1.46893 * 109.47553 * 89.99929 * 13 12 2 15 15 C 1.46905 * 110.99512 * 66.04577 * 14 13 12 16 16 C 1.46895 * 111.00540 * 189.99712 * 14 13 12 17 17 H 1.09004 * 109.46813 * 54.99877 * 16 14 13 18 18 C 1.52998 * 109.47423 * 295.00215 * 16 14 13 19 19 C 1.50700 * 109.47496 * 174.99998 * 16 14 13 20 20 H 1.07997 * 119.99775 * 114.90263 * 19 16 14 21 21 C 1.37877 * 119.99807 * 294.90869 * 19 16 14 22 22 N 1.31517 * 119.99808 * 179.39766 * 21 19 16 23 23 Si 1.86796 * 120.00368 * 359.39583 * 21 19 16 24 24 H 1.48506 * 109.46983 * 85.05092 * 23 21 19 25 25 H 1.48500 * 109.47399 * 205.05002 * 23 21 19 26 26 H 1.48501 * 109.47059 * 325.05754 * 23 21 19 27 27 H 1.09005 * 109.47364 * 90.02712 * 1 2 3 28 28 H 1.09003 * 109.47247 * 210.02206 * 1 2 3 29 29 H 1.09001 * 109.47503 * 330.02740 * 1 2 3 30 30 H 1.08994 * 109.46078 * 65.82781 * 6 5 4 31 31 H 1.09001 * 109.45629 * 305.84891 * 6 5 4 32 32 H 1.08996 * 109.50690 * 180.87803 * 7 6 5 33 33 H 1.09002 * 109.50242 * 60.76025 * 7 6 5 34 34 H 1.09003 * 109.52236 * 177.56004 * 8 7 6 35 35 H 1.09004 * 109.52309 * 297.68418 * 8 7 6 36 36 H 1.09001 * 109.50320 * 62.31992 * 9 8 7 37 37 H 1.08998 * 109.50478 * 182.43768 * 9 8 7 38 38 H 1.08998 * 109.46480 * 294.17126 * 10 5 4 39 39 H 1.08994 * 109.46464 * 54.15765 * 10 5 4 40 40 H 1.09003 * 109.47308 * 210.00207 * 13 12 2 41 41 H 1.09007 * 109.47191 * 329.99508 * 13 12 2 42 42 H 1.09001 * 109.47381 * 60.00375 * 15 14 13 43 43 H 1.09003 * 109.46770 * 180.02562 * 15 14 13 44 44 H 1.08998 * 109.47005 * 299.99787 * 15 14 13 45 45 H 1.09008 * 109.47182 * 54.60761 * 18 16 14 46 46 H 1.08993 * 109.47624 * 174.60493 * 18 16 14 47 47 H 1.09004 * 109.47050 * 294.61332 * 18 16 14 48 48 H 0.96999 * 119.99768 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2210 1.1117 0.0000 4 6 3.5110 0.9797 0.0005 5 7 4.4166 2.0291 0.0001 6 6 3.7225 3.3231 -0.0004 7 6 4.7452 4.4521 -0.1476 8 6 5.7413 4.3864 1.0134 9 6 6.4153 3.0116 1.0220 10 6 5.3440 1.9243 1.1339 11 16 3.9321 -0.6773 -0.0058 12 6 2.2275 -1.1219 0.0005 13 6 1.6791 -2.5255 0.0006 14 7 1.5014 -2.9820 -1.3843 15 6 2.7963 -3.1126 -2.0657 16 6 0.7525 -4.2448 -1.4305 17 1 -0.1938 -4.1256 -0.9028 18 6 1.5735 -5.3494 -0.7620 19 6 0.4839 -4.6174 -2.8657 20 1 0.9292 -5.5075 -3.2850 21 6 -0.3305 -3.8219 -3.6436 22 7 -0.5554 -4.1407 -4.8996 23 14 -1.1142 -2.2915 -2.9136 24 1 -0.1610 -1.1562 -3.0037 25 1 -2.3504 -1.9609 -3.6672 26 1 -1.4540 -2.5406 -1.4896 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 3.1800 3.4446 0.9371 31 1 3.0204 3.3582 -0.8335 32 1 4.2312 5.4131 -0.1323 33 1 5.2787 4.3390 -1.0914 34 1 6.4971 5.1619 0.8893 35 1 5.2138 4.5393 1.9550 36 1 6.9758 2.8753 0.0971 37 1 7.0937 2.9442 1.8725 38 1 4.7939 2.0524 2.0661 39 1 5.8197 0.9437 1.1246 40 1 2.3757 -3.1877 0.5149 41 1 0.7177 -2.5400 0.5142 42 1 3.4145 -3.8372 -1.5355 43 1 2.6357 -3.4515 -3.0892 44 1 3.2995 -2.1458 -2.0782 45 1 1.8493 -5.0380 0.2456 46 1 0.9803 -6.2624 -0.7104 47 1 2.4758 -5.5347 -1.3447 48 1 -1.1280 -3.5808 -5.4469 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324743761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:38 Heat of formation + Delta-G solvation = 32.805101 kcal Electronic energy + Delta-G solvation = -26180.256255 eV Core-core repulsion = 22782.037163 eV Total energy + Delta-G solvation = -3398.219092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43097 -39.88646 -38.86300 -35.20827 -34.43199 -32.63266 -31.99272 -31.28385 -29.50178 -27.46924 -27.26370 -26.41916 -24.69355 -24.03487 -23.39514 -21.12562 -20.82639 -19.61088 -19.15190 -18.84425 -17.65224 -16.99823 -16.49651 -16.22078 -15.82181 -15.57044 -15.43262 -15.33881 -14.96433 -14.83060 -14.62282 -14.38242 -14.34935 -14.16045 -13.70861 -13.53205 -13.33079 -13.22293 -13.01847 -12.85503 -12.63607 -12.51572 -12.27364 -12.15803 -11.96955 -11.81797 -11.75905 -11.62797 -11.51789 -11.48664 -11.15134 -10.81312 -10.71873 -10.63697 -10.10606 -9.05755 -8.87155 -8.23554 -6.32505 -0.25768 0.16533 0.73000 1.43918 1.54044 1.61851 1.72137 2.45506 2.49539 3.03002 3.40392 3.59841 3.75959 3.83959 3.93234 3.96640 4.11654 4.14908 4.28397 4.41566 4.45801 4.48840 4.49307 4.52776 4.60492 4.64211 4.65334 4.73654 4.75302 4.77760 4.79737 4.83103 4.87961 5.00580 5.02880 5.14828 5.16339 5.20370 5.24606 5.32673 5.41488 5.46487 5.61381 5.65801 5.77649 6.08643 6.44871 6.58165 6.76154 6.83096 7.41930 8.89120 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.003651 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.578031 B = 7667.330899 C = 8210.151202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.080 3.920 3 N -0.533 5.533 4 C 0.209 3.791 5 N -0.452 5.452 6 C 0.071 3.929 7 C -0.115 4.115 8 C -0.121 4.121 9 C -0.112 4.112 10 C 0.051 3.949 11 S 0.160 5.840 12 C -0.236 4.236 13 C 0.130 3.870 14 N -0.547 5.547 15 C 0.046 3.954 16 C 0.174 3.826 17 H 0.046 0.954 18 C -0.157 4.157 19 C -0.503 4.503 20 H 0.034 0.966 21 C 0.030 3.970 22 N -0.949 5.949 23 Si 0.970 3.030 24 H -0.278 1.278 25 H -0.321 1.321 26 H -0.244 1.244 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.043 0.957 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.666 16.139 17.634 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.255 5.255 4 C -0.160 4.160 5 N -0.173 5.173 6 C -0.058 4.058 7 C -0.153 4.153 8 C -0.158 4.158 9 C -0.150 4.150 10 C -0.075 4.075 11 S 0.414 5.586 12 C -0.358 4.358 13 C 0.000 4.000 14 N -0.272 5.272 15 C -0.103 4.103 16 C 0.068 3.932 17 H 0.064 0.936 18 C -0.216 4.216 19 C -0.542 4.542 20 H 0.052 0.948 21 C -0.169 4.169 22 N -0.589 5.589 23 Si 0.799 3.201 24 H -0.204 1.204 25 H -0.251 1.251 26 H -0.167 1.167 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.392 16.510 16.836 27.625 hybrid contribution -1.556 -0.141 0.146 1.569 sum 12.836 16.369 16.981 26.853 Atomic orbital electron populations 1.20409 0.87115 1.03833 1.02201 1.19994 0.98256 0.86251 1.00683 1.66654 1.04186 1.32309 1.22390 1.25195 0.91344 0.97454 1.02050 1.59203 1.15142 1.00934 1.42054 1.22053 0.96075 0.86199 1.01468 1.21670 0.96712 0.96902 1.00002 1.21625 0.98671 0.97429 0.98101 1.21640 0.96382 0.92942 1.03987 1.22555 0.93652 1.02026 0.89258 1.83461 1.06253 0.98237 1.70650 1.25492 0.94857 1.00636 1.14851 1.20454 1.00428 0.88004 0.91119 1.62411 1.18930 1.32480 1.13413 1.22054 0.89716 0.99195 0.99307 1.19724 0.93341 0.85212 0.94903 0.93570 1.22177 1.00258 0.99738 0.99390 1.21111 1.28316 1.08644 0.96119 0.94758 1.25769 0.96204 1.00372 0.94550 1.70083 1.39511 1.40590 1.08726 0.85369 0.75369 0.80163 0.79156 1.20416 1.25077 1.16718 0.92636 0.89653 0.89736 0.93685 0.91783 0.89514 0.91268 0.89538 0.91660 0.90813 0.88408 0.93184 0.89672 0.92485 0.88787 0.94942 0.93309 0.92973 0.92007 0.92850 0.93829 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 10.05 71.23 0.72 -1.69 16 2 C 0.08 2.72 6.74 41.40 0.28 2.99 16 3 N -0.53 -17.76 9.44 -189.87 -1.79 -19.55 16 4 C 0.21 6.10 6.73 179.32 1.21 7.31 16 5 N -0.45 -10.70 4.72 -708.88 -3.35 -14.05 16 6 C 0.07 1.54 4.83 86.33 0.42 1.96 16 7 C -0.11 -1.69 6.10 30.65 0.19 -1.50 16 8 C -0.12 -1.31 6.00 30.67 0.18 -1.13 16 9 C -0.11 -1.30 6.10 30.65 0.19 -1.11 16 10 C 0.05 0.88 5.33 86.33 0.46 1.34 16 11 S 0.16 4.45 20.88 -56.49 -1.18 3.27 16 12 C -0.24 -7.72 5.29 24.57 0.13 -7.59 16 13 C 0.13 4.27 4.62 85.56 0.40 4.66 16 14 N -0.55 -22.41 2.82 -906.05 -2.55 -24.96 16 15 C 0.05 1.83 8.56 127.69 1.09 2.93 16 16 C 0.17 7.67 1.70 44.17 0.08 7.75 16 17 H 0.05 2.05 6.78 -2.38 -0.02 2.04 16 18 C -0.16 -5.78 8.39 71.98 0.60 -5.17 16 19 C -0.50 -28.02 7.76 25.60 0.20 -27.82 16 20 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 21 C 0.03 1.75 5.47 84.65 0.46 2.21 16 22 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 23 Si 0.97 48.56 25.24 68.60 1.73 50.30 16 24 H -0.28 -14.23 6.87 99.48 0.68 -13.55 16 25 H -0.32 -16.38 7.11 99.48 0.71 -15.68 16 26 H -0.24 -10.92 6.51 99.48 0.65 -10.28 16 27 H 0.05 1.99 6.79 -2.38 -0.02 1.97 16 28 H 0.08 2.45 6.70 -2.39 -0.02 2.44 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.40 7.34 -2.39 -0.02 1.38 16 40 H 0.06 1.67 6.82 -2.39 -0.02 1.66 16 41 H 0.09 2.93 6.60 -2.38 -0.02 2.92 16 42 H 0.03 1.16 6.63 -2.39 -0.02 1.14 16 43 H 0.05 2.30 6.99 -2.39 -0.02 2.29 16 44 H 0.05 1.97 6.10 -2.39 -0.01 1.96 16 45 H 0.06 1.88 6.50 -2.38 -0.02 1.86 16 46 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.04 1.64 6.78 -2.39 -0.02 1.63 16 48 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -68.73 370.78 0.61 -68.13 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.85 Total: 11.64 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 6.59 Total: -14.86 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -7.39 Total: -118.47 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.73 Total: 50.30 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.18 Total: 3.27 kcal Total: -68.73 0.61 -68.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324743761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.931 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds