Wall clock time and date at job start Tue Mar 31 2020 14:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47503 * 2 1 4 4 C 1.36739 * 127.13727 * 82.11378 * 3 2 1 5 5 C 1.50699 * 126.34897 * 359.95228 * 4 3 2 6 6 H 1.08999 * 110.89019 * 12.55006 * 5 4 3 7 7 C 1.54767 * 111.01229 * 248.60683 * 5 4 3 8 8 C 1.51689 * 102.47816 * 217.98552 * 7 5 4 9 9 N 1.27638 * 108.46050 * 15.27973 * 8 7 5 10 10 O 1.41376 * 113.17542 * 0.32515 * 9 8 7 11 11 N 1.30297 * 107.30849 * 179.97438 * 4 3 2 12 12 N 1.28534 * 110.04957 * 0.02562 * 11 4 3 13 13 C 1.31218 * 109.85965 * 359.74493 * 12 11 4 14 14 N 1.38578 * 126.47316 * 180.25227 * 13 12 11 15 15 C 1.46897 * 111.00368 * 246.98157 * 14 13 12 16 16 C 1.50699 * 109.46920 * 56.51357 * 15 14 13 17 17 H 1.08008 * 119.99911 * 4.26897 * 16 15 14 18 18 C 1.37879 * 120.00013 * 184.27181 * 16 15 14 19 19 N 1.31511 * 119.99913 * 4.99108 * 18 16 15 20 20 Si 1.86796 * 119.99818 * 184.99127 * 18 16 15 21 21 H 1.48497 * 109.47633 * 5.00359 * 20 18 16 22 22 H 1.48504 * 109.47191 * 125.00653 * 20 18 16 23 23 H 1.48498 * 109.47159 * 245.00156 * 20 18 16 24 24 C 1.46903 * 111.00143 * 10.94099 * 14 13 12 25 25 C 1.52999 * 109.47358 * 162.04045 * 24 14 13 26 26 O 1.42894 * 109.46954 * 67.59923 * 25 24 14 27 27 C 1.42903 * 113.99765 * 184.63838 * 26 25 24 28 28 H 1.08997 * 109.47033 * 51.80023 * 1 2 3 29 29 H 1.09004 * 109.47362 * 171.79758 * 1 2 3 30 30 H 1.08997 * 109.47595 * 291.79649 * 1 2 3 31 31 H 1.09008 * 109.46741 * 119.99522 * 2 1 3 32 32 H 1.08997 * 109.47688 * 239.99049 * 2 1 3 33 33 H 1.08996 * 110.80971 * 336.23388 * 7 5 4 34 34 H 1.09005 * 110.80524 * 99.74187 * 7 5 4 35 35 H 1.07999 * 125.76808 * 195.29796 * 8 7 5 36 36 H 1.09002 * 109.47051 * 176.50735 * 15 14 13 37 37 H 1.08990 * 109.47638 * 296.51127 * 15 14 13 38 38 H 0.96998 * 119.99748 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.47072 * 282.04636 * 24 14 13 40 40 H 1.09003 * 109.46927 * 42.04079 * 24 14 13 41 41 H 1.09000 * 109.46637 * 187.59975 * 25 24 14 42 42 H 1.08998 * 109.47151 * 307.59456 * 25 24 14 43 43 H 1.09000 * 109.47457 * 304.90651 * 27 26 25 44 44 H 1.09005 * 109.47050 * 64.90927 * 27 26 25 45 45 H 1.09004 * 109.46858 * 184.90408 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1526 2.2093 1.0798 5 6 1.8219 1.8719 2.5108 6 1 1.6616 0.8004 2.6304 7 6 0.5936 2.6758 3.0009 8 6 0.9659 3.0012 4.4350 9 7 2.2161 2.7926 4.5853 10 8 2.8512 2.3438 3.4046 11 7 2.6189 3.3445 0.6420 12 7 2.7867 3.2904 -0.6312 13 6 2.4385 2.1063 -1.0768 14 7 2.4860 1.6747 -2.3928 15 6 1.1345 1.4462 -2.9210 16 6 0.3212 2.7074 -2.7828 17 1 0.7833 3.6098 -2.4104 18 6 -1.0127 2.7092 -3.1318 19 7 -1.5998 1.5888 -3.4915 20 14 -1.9858 4.3032 -3.0936 21 1 -1.0747 5.4320 -2.7757 22 1 -2.6133 4.5321 -4.4199 23 1 -3.0431 4.2129 -2.0548 24 6 3.2255 2.6265 -3.2326 25 6 3.6453 1.9395 -4.5336 26 8 2.4847 1.6495 -5.3152 27 6 2.7569 0.9111 -6.5080 28 1 -0.3633 0.6355 -0.8076 29 1 -0.3634 -1.0172 -0.1466 30 1 -0.3634 0.3816 0.9541 31 1 1.8932 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8898 33 1 0.4693 3.5876 2.4168 34 1 -0.3086 2.0651 2.9642 35 1 0.2876 3.3501 5.1996 36 1 1.1977 1.1681 -3.9730 37 1 0.6565 0.6425 -2.3609 38 1 -2.5381 1.5902 -3.7374 39 1 2.5880 3.4803 -3.4619 40 1 4.1127 2.9683 -2.6995 41 1 4.3065 2.5990 -5.0957 42 1 4.1687 1.0118 -4.3021 43 1 3.5033 1.4401 -7.1006 44 1 3.1351 -0.0770 -6.2453 45 1 1.8398 0.8067 -7.0878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646715877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:14 Heat of formation + Delta-G solvation = 80.569529 kcal Electronic energy + Delta-G solvation = -29218.118177 eV Core-core repulsion = 25275.677091 eV Total energy + Delta-G solvation = -3942.441086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41436 -39.97053 -37.99758 -36.22911 -35.22041 -32.96471 -32.62512 -31.68265 -30.17804 -29.47302 -28.35128 -26.52183 -25.57079 -24.29608 -23.52140 -22.71489 -21.98980 -21.46499 -19.97643 -19.71532 -17.26484 -16.80626 -16.61097 -16.20102 -15.74561 -15.69347 -15.55822 -15.07077 -14.69841 -14.44646 -14.32488 -14.05897 -13.51945 -13.20990 -12.98081 -12.79644 -12.65482 -12.57243 -12.14289 -12.02253 -11.80597 -11.63239 -11.30105 -11.21462 -11.09485 -10.93716 -10.87106 -10.83769 -10.71553 -10.28792 -10.11965 -9.90945 -9.76301 -9.56741 -9.52225 -9.14424 -8.78991 -8.43847 -7.43645 -6.12042 -4.15022 1.77605 2.26592 2.60448 3.22888 3.25825 3.32523 3.41228 3.52445 4.16988 4.27822 4.37186 4.38916 4.56097 4.58325 4.67673 4.74666 4.90393 5.23826 5.30447 5.33420 5.46939 5.48671 5.61893 5.67383 5.69683 5.76701 5.78515 5.80974 5.88641 5.93134 5.97199 6.01178 6.08303 6.34192 6.61451 6.66020 6.68175 7.01487 7.26787 7.28067 7.53593 7.59976 7.67727 7.84517 8.12745 8.17253 8.91615 9.41526 9.50002 10.94802 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.004878 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.245549 B = 5738.614898 C = 6801.273467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.110 3.890 3 N -0.465 5.465 4 C 0.137 3.863 5 C 0.149 3.851 6 H 0.098 0.902 7 C -0.152 4.152 8 C 0.067 3.933 9 N -0.291 5.291 10 O -0.184 6.184 11 N -0.258 5.258 12 N -0.340 5.340 13 C 0.427 3.573 14 N -0.465 5.465 15 C 0.173 3.827 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.072 3.928 19 N -0.889 5.889 20 Si 0.884 3.116 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.286 1.286 24 C 0.073 3.927 25 C 0.069 3.931 26 O -0.361 6.361 27 C 0.031 3.969 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.204 0.796 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.034 0.966 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -5.442 6.324 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 N -0.161 5.161 4 C -0.131 4.131 5 C 0.087 3.913 6 H 0.116 0.884 7 C -0.192 4.192 8 C -0.147 4.147 9 N -0.031 5.031 10 O -0.201 6.201 11 N -0.099 5.099 12 N -0.186 5.186 13 C 0.071 3.929 14 N -0.189 5.189 15 C 0.050 3.950 16 C -0.580 4.580 17 H 0.081 0.919 18 C -0.131 4.131 19 N -0.528 5.528 20 Si 0.712 3.288 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.212 1.212 24 C -0.054 4.054 25 C -0.009 4.009 26 O -0.280 6.280 27 C -0.066 4.066 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.220 0.780 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.015 -4.516 6.891 9.645 hybrid contribution -2.139 -0.083 -0.871 2.311 sum 2.876 -4.599 6.020 8.104 Atomic orbital electron populations 1.22311 0.93310 1.03887 1.03987 1.21809 0.96356 0.79048 1.04045 1.45872 1.50540 1.13522 1.06194 1.23338 1.09883 0.89834 0.90015 1.21264 0.87640 0.98533 0.83853 0.88423 1.23283 0.99756 1.03074 0.93102 1.27781 0.94562 0.94964 0.97393 1.77898 1.09871 1.09893 1.05398 1.91375 1.26298 1.80007 1.22401 1.73809 1.14037 1.17961 1.04092 1.74660 1.27182 1.14033 1.02722 1.22641 0.94814 0.86575 0.88891 1.59429 1.21692 1.42309 0.95456 1.20538 0.78828 0.97112 0.98492 1.21721 0.95221 0.97167 1.43871 0.91949 1.24796 0.97443 0.95919 0.94908 1.69932 1.11677 1.25469 1.45751 0.86654 0.80043 0.84573 0.77562 1.19637 1.20878 1.21203 1.21967 0.98349 0.94290 0.90805 1.22522 0.88072 0.98649 0.91608 1.88231 1.30552 1.74793 1.34407 1.22670 1.01252 0.94781 0.87921 0.88230 0.90944 0.93088 0.90148 0.88039 0.86764 0.87412 0.78003 0.90076 0.94287 0.92970 0.90642 0.89904 0.93230 0.93290 0.94979 0.94705 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 9.82 37.16 0.36 -2.31 16 2 C 0.11 1.64 5.76 -4.05 -0.02 1.62 16 3 N -0.47 -8.70 2.81 -114.09 -0.32 -9.02 16 4 C 0.14 2.58 6.99 -154.01 -1.08 1.50 16 5 C 0.15 2.18 4.23 -26.95 -0.11 2.07 16 6 H 0.10 1.19 7.24 -51.93 -0.38 0.81 16 7 C -0.15 -1.79 6.63 -26.46 -0.18 -1.97 16 8 C 0.07 0.68 12.32 -13.53 -0.17 0.51 16 9 N -0.29 -4.10 12.45 32.73 0.41 -3.70 16 10 O -0.18 -3.11 12.23 -11.36 -0.14 -3.25 16 11 N -0.26 -5.70 12.18 32.99 0.40 -5.30 16 12 N -0.34 -7.87 11.05 30.31 0.34 -7.54 16 13 C 0.43 9.15 5.71 -318.88 -1.82 7.33 16 14 N -0.46 -9.68 4.61 -175.89 -0.81 -10.49 16 15 C 0.17 4.07 4.81 -4.98 -0.02 4.04 16 16 C -0.54 -14.27 7.56 -34.44 -0.26 -14.53 16 17 H 0.06 1.77 6.64 -52.48 -0.35 1.42 16 18 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 19 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 20 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.07 1.42 4.91 -3.82 -0.02 1.41 16 25 C 0.07 1.12 6.23 37.16 0.23 1.36 16 26 O -0.36 -6.75 7.72 -35.23 -0.27 -7.02 16 27 C 0.03 0.43 11.01 101.05 1.11 1.54 16 28 H 0.10 2.03 6.48 -51.93 -0.34 1.69 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.93 7.49 -51.92 -0.39 0.54 16 32 H 0.10 1.53 7.75 -51.93 -0.40 1.13 16 33 H 0.11 1.59 7.90 -51.93 -0.41 1.18 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.08 2.03 5.08 -51.93 -0.26 1.77 16 37 H 0.04 0.94 4.73 -51.93 -0.25 0.69 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.08 1.68 6.63 -51.93 -0.34 1.33 16 40 H 0.08 1.52 7.61 -51.93 -0.39 1.13 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -33.63 367.68 -7.66 -41.29 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.45 Total: 2.17 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.07 Total: 4.41 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.75 Total: -59.56 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.41 Total: -10.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.63 -7.66 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646715877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.859 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds