Wall clock time and date at job start Tue Mar 31 2020 14:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46860 * 2 1 4 4 N 1.46498 * 109.47002 * 185.83076 * 3 2 1 5 5 C 1.36935 * 119.99501 * 82.71507 * 4 3 2 6 6 H 1.08004 * 119.99696 * 171.09620 * 5 4 3 7 7 C 1.38809 * 120.00584 * 351.09434 * 5 4 3 8 8 N 1.31622 * 119.99691 * 1.63421 * 7 5 4 9 9 Si 1.86796 * 120.00500 * 181.62676 * 7 5 4 10 10 H 1.48502 * 109.46873 * 90.00079 * 9 7 5 11 11 H 1.48497 * 109.47359 * 210.00347 * 9 7 5 12 12 H 1.48500 * 109.47154 * 330.00697 * 9 7 5 13 13 C 1.46492 * 120.00244 * 262.71403 * 4 3 2 14 14 C 1.53002 * 109.47016 * 273.21092 * 13 4 3 15 15 H 1.09000 * 109.47230 * 301.69393 * 14 13 4 16 16 O 1.42897 * 109.47364 * 61.70351 * 14 13 4 17 17 C 1.53001 * 109.47019 * 181.70204 * 14 13 4 18 18 O 1.42905 * 109.47024 * 174.99830 * 17 14 13 19 19 C 1.35984 * 116.99804 * 179.97438 * 18 17 14 20 20 C 1.38697 * 120.00012 * 359.72949 * 19 18 17 21 21 C 1.38134 * 119.99720 * 179.76299 * 20 19 18 22 22 C 1.38693 * 120.00349 * 0.50589 * 21 20 19 23 23 O 1.35984 * 120.00314 * 179.72258 * 22 21 20 24 24 C 1.42892 * 117.00141 * 0.02562 * 23 22 21 25 25 C 1.52998 * 109.47438 * 180.02562 * 24 23 22 26 26 C 1.38697 * 119.99653 * 359.74749 * 22 21 20 27 27 C 1.38130 * 119.99984 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.46477 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47280 * 299.99727 * 1 2 3 30 30 H 1.08995 * 109.47415 * 59.99870 * 1 2 3 31 31 H 1.08996 * 109.47368 * 240.00700 * 2 1 3 32 32 H 1.08995 * 109.47415 * 120.00130 * 2 1 3 33 33 H 1.09002 * 109.46480 * 65.83295 * 3 2 1 34 34 H 1.08994 * 109.47421 * 305.83689 * 3 2 1 35 35 H 0.96996 * 119.99898 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47270 * 153.21041 * 13 4 3 37 37 H 1.09000 * 109.47528 * 33.21129 * 13 4 3 38 38 H 0.96698 * 114.00159 * 59.99487 * 16 14 13 39 39 H 1.09001 * 109.47457 * 55.00052 * 17 14 13 40 40 H 1.08999 * 109.47046 * 294.99536 * 17 14 13 41 41 H 1.08002 * 120.00031 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.99811 * 180.23340 * 21 20 19 43 43 H 1.09001 * 109.47178 * 299.99844 * 24 23 22 44 44 H 1.08997 * 109.46981 * 59.99670 * 24 23 22 45 45 H 1.08998 * 109.46990 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.46799 * 300.00065 * 25 24 23 47 47 H 1.08997 * 109.47313 * 59.99862 * 25 24 23 48 48 H 1.07999 * 120.00301 * 179.97438 * 26 22 21 49 49 H 1.08011 * 119.99785 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4982 1.4450 -0.1403 5 6 4.0667 1.3357 -1.3813 6 1 5.1300 1.4811 -1.5028 7 6 3.2766 1.0380 -2.4830 8 7 1.9763 0.8925 -2.3402 9 14 4.0586 0.8440 -4.1683 10 1 4.4453 -0.5749 -4.3741 11 1 3.0860 1.2488 -5.2149 12 1 5.2662 1.7038 -4.2556 13 6 4.3482 1.5644 1.0468 14 6 4.5630 3.0436 1.3735 15 1 5.0191 3.5421 0.5182 16 8 3.3048 3.6546 1.6659 17 6 5.4852 3.1690 2.5880 18 8 5.7796 4.5476 2.8222 19 6 6.5927 4.8352 3.8736 20 6 7.0910 3.8112 4.6653 21 6 7.9208 4.1030 5.7303 22 6 8.2474 5.4207 6.0144 23 8 9.0598 5.7084 7.0662 24 6 9.5409 4.6043 7.8353 25 6 10.4318 5.1207 8.9669 26 6 7.7449 6.4451 5.2258 27 6 6.9197 6.1528 4.1573 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.7644 1.9253 0.9376 34 1 1.5939 1.9857 -0.8331 35 1 1.4240 0.6849 -3.1101 36 1 5.3110 1.0914 0.8535 37 1 3.8647 1.0725 1.8909 38 1 2.8415 3.2607 2.4177 39 1 6.4116 2.6268 2.3983 40 1 4.9912 2.7490 3.4641 41 1 6.8329 2.7854 4.4471 42 1 8.3119 3.3054 6.3446 43 1 8.6961 4.0604 8.2579 44 1 10.1174 3.9383 7.1935 45 1 10.7991 4.2784 9.5532 46 1 11.2766 5.6649 8.5446 47 1 9.8549 5.7865 9.6086 48 1 7.9988 7.4712 5.4471 49 1 6.5280 6.9506 3.5435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123053272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:15 Heat of formation + Delta-G solvation = -72.903513 kcal Electronic energy + Delta-G solvation = -27173.930496 eV Core-core repulsion = 23296.081912 eV Total energy + Delta-G solvation = -3877.848584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51657 -39.21507 -37.53163 -36.33359 -35.25822 -32.13394 -31.93002 -31.39372 -31.19704 -29.77104 -28.42254 -25.65678 -25.41734 -24.36528 -22.81815 -21.78080 -21.58274 -20.88167 -19.75203 -18.60719 -17.78179 -16.97427 -16.53952 -16.38478 -16.02943 -15.53830 -14.98258 -14.92609 -14.32193 -14.26199 -13.80809 -13.72273 -13.55716 -13.51551 -13.28937 -13.12336 -12.82377 -12.70660 -12.42364 -12.18589 -11.96572 -11.83825 -11.29827 -11.26641 -11.19625 -10.94226 -10.84694 -10.76959 -10.42251 -10.35616 -10.27616 -10.03790 -9.82014 -9.65677 -9.62375 -9.23412 -9.21663 -8.24044 -7.79997 -6.75971 -5.56883 -3.08852 1.11460 1.37630 2.96503 3.28375 3.40079 3.46146 3.46940 3.62059 4.48542 4.51467 4.55289 4.63727 4.72938 4.86474 4.86748 5.00760 5.04071 5.13712 5.27440 5.29390 5.36003 5.40115 5.43199 5.51546 5.63085 5.71442 5.75200 5.86648 5.94394 6.00827 6.14245 6.23645 6.35899 6.35985 6.45326 6.48210 6.66184 6.72712 6.87515 7.06520 7.18146 7.38634 7.48668 7.50609 7.66861 8.02955 8.21034 8.22815 8.52758 9.32248 9.90397 10.32275 11.32887 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002171 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.187951 B =12895.201285 C =13376.909686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C 0.179 3.821 4 N -0.591 5.591 5 C -0.243 4.243 6 H 0.071 0.929 7 C -0.008 4.008 8 N -0.902 5.902 9 Si 0.910 3.090 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.129 3.871 14 C 0.085 3.915 15 H 0.104 0.896 16 O -0.542 6.542 17 C 0.028 3.972 18 O -0.302 6.302 19 C 0.103 3.897 20 C -0.173 4.173 21 C -0.167 4.167 22 C 0.083 3.917 23 O -0.319 6.319 24 C 0.055 3.945 25 C -0.152 4.152 26 C -0.111 4.111 27 C -0.116 4.116 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.360 0.640 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.135 0.865 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.219 5.346 19.437 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.055 3.945 4 N -0.311 5.311 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.204 4.204 8 N -0.550 5.550 9 Si 0.740 3.260 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.209 1.209 13 C -0.001 4.001 14 C 0.022 3.978 15 H 0.122 0.878 16 O -0.345 6.345 17 C -0.048 4.048 18 O -0.216 6.216 19 C 0.057 3.943 20 C -0.192 4.192 21 C -0.186 4.186 22 C 0.039 3.961 23 O -0.234 6.234 24 C -0.021 4.021 25 C -0.209 4.209 26 C -0.130 4.130 27 C -0.134 4.134 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.118 0.882 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.206 0.794 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.153 0.847 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.234 5.982 18.674 22.598 hybrid contribution 0.387 -1.117 -0.230 1.204 sum 11.621 4.865 18.444 22.336 Atomic orbital electron populations 1.21563 0.98606 0.98678 1.00123 1.22218 0.92999 1.00599 0.99697 1.21055 0.81547 0.94340 0.97563 1.44025 1.01914 1.84153 1.01025 1.19321 0.92785 1.40579 0.84511 0.91087 1.24823 0.95882 1.01587 0.98114 1.70255 1.02938 1.53992 1.27823 0.86163 0.78037 0.77635 0.84126 1.21778 1.21769 1.20864 1.21222 0.96052 0.91630 0.91181 1.23126 0.82464 0.98330 0.93845 0.87801 1.86681 1.33145 1.61013 1.53677 1.23848 1.00258 0.80451 1.00239 1.86250 1.62450 1.28020 1.44845 1.19061 0.92676 0.93699 0.88876 1.21105 1.01502 0.99210 0.97400 1.21004 1.02187 0.95293 1.00141 1.18819 0.94355 0.93224 0.89731 1.86053 1.62262 1.34911 1.40162 1.22732 0.97624 0.88757 0.92952 1.21768 0.99662 1.02363 0.97082 1.20210 0.99255 0.98535 0.94995 1.20294 1.00134 0.94517 0.98476 0.95490 0.95482 0.92442 0.88834 0.97945 0.98054 0.88178 0.94073 0.92572 0.94124 0.79427 0.91612 0.92352 0.85134 0.85496 0.92217 0.92199 0.90457 0.91550 0.91546 0.84695 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.12 -2.65 5.33 -26.72 -0.14 -2.79 16 3 C 0.18 4.27 4.66 -4.04 -0.02 4.25 16 4 N -0.59 -14.12 2.51 -173.24 -0.43 -14.55 16 5 C -0.24 -6.38 9.76 -15.06 -0.15 -6.53 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.23 5.19 -17.43 -0.09 -0.32 16 8 N -0.90 -24.46 7.26 55.49 0.40 -24.06 16 9 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.13 2.43 5.35 -4.05 -0.02 2.41 16 14 C 0.09 1.49 3.51 -26.73 -0.09 1.39 16 15 H 0.10 2.08 8.14 -51.93 -0.42 1.66 16 16 O -0.54 -10.06 11.93 -40.09 -0.48 -10.54 16 17 C 0.03 0.40 4.37 37.16 0.16 0.56 16 18 O -0.30 -4.70 10.10 -24.54 -0.25 -4.95 16 19 C 0.10 1.40 6.69 -39.24 -0.26 1.14 16 20 C -0.17 -2.07 9.03 -39.45 -0.36 -2.43 16 21 C -0.17 -1.81 9.03 -39.45 -0.36 -2.17 16 22 C 0.08 0.95 6.69 -39.24 -0.26 0.69 16 23 O -0.32 -3.37 10.14 -19.69 -0.20 -3.57 16 24 C 0.05 0.40 5.46 37.16 0.20 0.60 16 25 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 26 C -0.11 -1.25 9.98 -39.45 -0.39 -1.65 16 27 C -0.12 -1.42 9.98 -39.45 -0.39 -1.82 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.00 0.03 6.79 -51.93 -0.35 -0.33 16 34 H 0.10 2.74 5.92 -51.93 -0.31 2.43 16 35 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 37 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.36 5.38 8.80 45.56 0.40 5.78 16 39 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 40 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 41 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 42 H 0.13 1.08 6.29 -52.48 -0.33 0.75 16 43 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 44 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 49 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -29.99 392.28 -8.93 -38.91 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.43 Total: 5.69 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.42 Total: -9.36 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.03 Total: -38.61 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.93 Total: -19.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.99 -8.93 -38.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123053272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.989 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds