Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46860 * 2 1 4 4 N 1.46498 * 109.47002 * 185.83076 * 3 2 1 5 5 C 1.36935 * 119.99501 * 82.71507 * 4 3 2 6 6 H 1.08004 * 119.99696 * 171.09620 * 5 4 3 7 7 C 1.38809 * 120.00584 * 351.09434 * 5 4 3 8 8 N 1.31622 * 119.99691 * 1.63421 * 7 5 4 9 9 Si 1.86796 * 120.00500 * 181.62676 * 7 5 4 10 10 H 1.48502 * 109.46873 * 90.00079 * 9 7 5 11 11 H 1.48497 * 109.47359 * 210.00347 * 9 7 5 12 12 H 1.48500 * 109.47154 * 330.00697 * 9 7 5 13 13 C 1.46492 * 120.00244 * 262.71403 * 4 3 2 14 14 C 1.53002 * 109.47016 * 273.21092 * 13 4 3 15 15 H 1.09000 * 109.47230 * 301.69393 * 14 13 4 16 16 O 1.42897 * 109.47364 * 61.70351 * 14 13 4 17 17 C 1.53001 * 109.47019 * 181.70204 * 14 13 4 18 18 O 1.42905 * 109.47024 * 174.99830 * 17 14 13 19 19 C 1.35984 * 116.99804 * 179.97438 * 18 17 14 20 20 C 1.38697 * 120.00012 * 359.72949 * 19 18 17 21 21 C 1.38134 * 119.99720 * 179.76299 * 20 19 18 22 22 C 1.38693 * 120.00349 * 0.50589 * 21 20 19 23 23 O 1.35984 * 120.00314 * 179.72258 * 22 21 20 24 24 C 1.42892 * 117.00141 * 0.02562 * 23 22 21 25 25 C 1.52998 * 109.47438 * 180.02562 * 24 23 22 26 26 C 1.38697 * 119.99653 * 359.74749 * 22 21 20 27 27 C 1.38130 * 119.99984 * 359.97438 * 26 22 21 28 28 H 1.09002 * 109.46477 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47280 * 299.99727 * 1 2 3 30 30 H 1.08995 * 109.47415 * 59.99870 * 1 2 3 31 31 H 1.08996 * 109.47368 * 240.00700 * 2 1 3 32 32 H 1.08995 * 109.47415 * 120.00130 * 2 1 3 33 33 H 1.09002 * 109.46480 * 65.83295 * 3 2 1 34 34 H 1.08994 * 109.47421 * 305.83689 * 3 2 1 35 35 H 0.96996 * 119.99898 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47270 * 153.21041 * 13 4 3 37 37 H 1.09000 * 109.47528 * 33.21129 * 13 4 3 38 38 H 0.96698 * 114.00159 * 59.99487 * 16 14 13 39 39 H 1.09001 * 109.47457 * 55.00052 * 17 14 13 40 40 H 1.08999 * 109.47046 * 294.99536 * 17 14 13 41 41 H 1.08002 * 120.00031 * 359.97438 * 20 19 18 42 42 H 1.08004 * 119.99811 * 180.23340 * 21 20 19 43 43 H 1.09001 * 109.47178 * 299.99844 * 24 23 22 44 44 H 1.08997 * 109.46981 * 59.99670 * 24 23 22 45 45 H 1.08998 * 109.46990 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.46799 * 300.00065 * 25 24 23 47 47 H 1.08997 * 109.47313 * 59.99862 * 25 24 23 48 48 H 1.07999 * 120.00301 * 179.97438 * 26 22 21 49 49 H 1.08011 * 119.99785 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4982 1.4450 -0.1403 5 6 4.0667 1.3357 -1.3813 6 1 5.1300 1.4811 -1.5028 7 6 3.2766 1.0380 -2.4830 8 7 1.9763 0.8925 -2.3402 9 14 4.0586 0.8440 -4.1683 10 1 4.4453 -0.5749 -4.3741 11 1 3.0860 1.2488 -5.2149 12 1 5.2662 1.7038 -4.2556 13 6 4.3482 1.5644 1.0468 14 6 4.5630 3.0436 1.3735 15 1 5.0191 3.5421 0.5182 16 8 3.3048 3.6546 1.6659 17 6 5.4852 3.1690 2.5880 18 8 5.7796 4.5476 2.8222 19 6 6.5927 4.8352 3.8736 20 6 7.0910 3.8112 4.6653 21 6 7.9208 4.1030 5.7303 22 6 8.2474 5.4207 6.0144 23 8 9.0598 5.7084 7.0662 24 6 9.5409 4.6043 7.8353 25 6 10.4318 5.1207 8.9669 26 6 7.7449 6.4451 5.2258 27 6 6.9197 6.1528 4.1573 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.7644 1.9253 0.9376 34 1 1.5939 1.9857 -0.8331 35 1 1.4240 0.6849 -3.1101 36 1 5.3110 1.0914 0.8535 37 1 3.8647 1.0725 1.8909 38 1 2.8415 3.2607 2.4177 39 1 6.4116 2.6268 2.3983 40 1 4.9912 2.7490 3.4641 41 1 6.8329 2.7854 4.4471 42 1 8.3119 3.3054 6.3446 43 1 8.6961 4.0604 8.2579 44 1 10.1174 3.9383 7.1935 45 1 10.7991 4.2784 9.5532 46 1 11.2766 5.6649 8.5446 47 1 9.8549 5.7865 9.6086 48 1 7.9988 7.4712 5.4471 49 1 6.5280 6.9506 3.5435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123053272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = -90.403560 kcal Electronic energy + Delta-G solvation = -27174.689355 eV Core-core repulsion = 23296.081912 eV Total energy + Delta-G solvation = -3878.607443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40576 -40.18192 -38.92228 -37.50273 -36.78080 -33.60405 -33.23295 -32.70978 -32.12442 -31.08415 -29.43709 -27.30562 -27.05194 -25.07721 -24.11257 -22.94116 -22.58227 -22.22366 -21.55946 -19.45994 -18.93069 -18.54974 -17.74997 -17.32842 -16.97946 -16.91321 -16.57410 -15.81369 -15.69555 -15.59050 -15.34757 -14.90257 -14.71858 -14.60928 -14.35252 -14.27040 -14.15863 -13.69269 -13.37851 -13.16543 -13.08660 -13.01453 -12.95572 -12.64368 -12.55590 -12.49521 -12.12364 -12.06195 -11.97859 -11.77965 -11.72375 -11.48875 -11.45568 -11.30230 -11.23634 -10.92406 -10.18203 -10.08388 -8.71085 -8.63753 -7.57050 -5.08411 0.25064 0.46777 1.49295 1.50945 1.57796 2.16822 2.33753 2.57426 2.73277 3.41357 3.58661 3.64943 3.78256 3.83640 4.04505 4.07947 4.10252 4.15824 4.20119 4.34703 4.39636 4.43024 4.46739 4.51129 4.55133 4.65497 4.76408 4.80945 4.93635 4.96249 4.97758 5.01526 5.08517 5.09264 5.20200 5.23172 5.31460 5.31789 5.35477 5.59615 5.61314 5.67190 5.70450 6.06951 6.33678 6.37391 6.55156 6.56625 6.96666 7.32801 8.02485 8.38489 9.29873 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002171 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.187951 B =12895.201285 C =13376.909686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C 0.187 3.813 4 N -0.609 5.609 5 C -0.251 4.251 6 H 0.071 0.929 7 C -0.059 4.059 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.127 3.873 14 C 0.097 3.903 15 H 0.070 0.930 16 O -0.564 6.564 17 C 0.039 3.961 18 O -0.328 6.328 19 C 0.077 3.923 20 C -0.174 4.174 21 C -0.167 4.167 22 C 0.079 3.921 23 O -0.332 6.332 24 C 0.044 3.956 25 C -0.149 4.149 26 C -0.117 4.117 27 C -0.125 4.125 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.239 0.761 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.150 0.850 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.364 4.705 21.837 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C 0.062 3.938 4 N -0.330 5.330 5 C -0.381 4.381 6 H 0.089 0.911 7 C -0.252 4.252 8 N -0.563 5.563 9 Si 0.794 3.206 10 H -0.217 1.217 11 H -0.226 1.226 12 H -0.205 1.205 13 C 0.000 4.000 14 C 0.034 3.966 15 H 0.088 0.912 16 O -0.370 6.370 17 C -0.037 4.037 18 O -0.242 6.242 19 C 0.032 3.968 20 C -0.193 4.193 21 C -0.186 4.186 22 C 0.035 3.965 23 O -0.247 6.247 24 C -0.030 4.030 25 C -0.206 4.206 26 C -0.136 4.136 27 C -0.144 4.144 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.224 0.776 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.168 0.832 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.405 5.344 21.120 25.070 hybrid contribution 0.111 -0.859 -0.835 1.203 sum 12.516 4.485 20.284 24.253 Atomic orbital electron populations 1.21453 0.96568 0.99800 1.00258 1.22027 0.94824 0.99553 0.98308 1.20815 0.81768 0.94546 0.96669 1.44195 1.02417 1.84627 1.01771 1.19562 0.92869 1.39797 0.85866 0.91125 1.25459 0.96531 1.02465 1.00792 1.70471 1.03469 1.54700 1.27673 0.85309 0.77116 0.77325 0.80835 1.21712 1.22609 1.20456 1.21395 0.95860 0.92657 0.90117 1.22711 0.82848 0.96466 0.94541 0.91216 1.86635 1.33898 1.61657 1.54808 1.23622 1.00263 0.80496 0.99306 1.86173 1.63444 1.28515 1.46067 1.19271 0.93672 0.94655 0.89227 1.21293 1.01259 0.99500 0.97219 1.21272 1.01577 0.95819 0.99939 1.19011 0.94142 0.93543 0.89848 1.86055 1.61987 1.36639 1.40019 1.23037 0.98362 0.88362 0.93276 1.21799 0.99115 1.03138 0.96565 1.20408 0.98940 0.99549 0.94671 1.20442 1.00510 0.94461 0.98985 0.93865 0.93309 0.94272 0.92410 0.96886 0.96288 0.92049 0.95009 0.91822 0.91780 0.77568 0.90112 0.89910 0.83654 0.83045 0.91244 0.91322 0.88310 0.91897 0.91834 0.83226 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.91 71.98 0.71 -4.07 16 2 C -0.11 -4.87 5.33 30.60 0.16 -4.71 16 3 C 0.19 8.89 4.66 86.38 0.40 9.29 16 4 N -0.61 -29.03 2.51 -702.01 -1.76 -30.79 16 5 C -0.25 -13.33 9.76 84.03 0.82 -12.51 16 6 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 7 C -0.06 -3.20 5.19 84.86 0.44 -2.76 16 8 N -0.91 -50.86 7.26 21.65 0.16 -50.70 16 9 Si 0.96 45.10 29.55 68.60 2.03 47.13 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.13 4.63 5.35 86.38 0.46 5.09 16 14 C 0.10 3.31 3.51 30.60 0.11 3.42 16 15 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 16 O -0.56 -20.53 11.93 -144.34 -1.72 -22.25 16 17 C 0.04 1.02 4.37 71.98 0.31 1.34 16 18 O -0.33 -9.94 10.10 -88.73 -0.90 -10.83 16 19 C 0.08 2.01 6.69 22.49 0.15 2.16 16 20 C -0.17 -3.77 9.03 22.35 0.20 -3.57 16 21 C -0.17 -3.22 9.03 22.35 0.20 -3.01 16 22 C 0.08 1.67 6.69 22.49 0.15 1.82 16 23 O -0.33 -6.39 10.14 -93.37 -0.95 -7.33 16 24 C 0.04 0.54 5.46 71.98 0.39 0.93 16 25 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 26 C -0.12 -2.51 9.98 22.35 0.22 -2.29 16 27 C -0.13 -3.03 9.98 22.35 0.22 -2.80 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.06 3.07 6.01 -2.39 -0.01 3.05 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.02 0.82 6.79 -2.39 -0.02 0.80 16 34 H 0.06 3.43 5.92 -2.39 -0.01 3.42 16 35 H 0.24 13.24 8.31 -92.71 -0.77 12.47 16 36 H 0.06 2.21 8.01 -2.39 -0.02 2.19 16 37 H 0.06 2.04 8.10 -2.39 -0.02 2.02 16 38 H 0.38 10.60 8.80 -74.06 -0.65 9.95 16 39 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 40 H 0.08 1.76 7.65 -2.39 -0.02 1.74 16 41 H 0.15 2.61 6.29 -2.91 -0.02 2.60 16 42 H 0.15 2.06 6.29 -2.91 -0.02 2.05 16 43 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 44 H 0.07 0.71 7.66 -2.39 -0.02 0.70 16 45 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 49 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -65.60 392.28 2.85 -62.76 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.28 Total: 24.24 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.71 Total: -12.20 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.60 Total: -81.50 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -3.56 Total: -40.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.60 2.85 -62.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123053272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.647 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds