Wall clock time and date at job start Tue Mar 31 2020 13:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47658 * 2 1 4 4 C 1.52998 * 109.46838 * 239.99784 * 2 1 3 5 5 C 1.50705 * 109.46905 * 60.00335 * 4 2 1 6 6 H 1.08004 * 120.00128 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00145 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00193 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46933 * 59.99993 * 9 7 5 11 11 H 1.48502 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47053 * 300.00268 * 9 7 5 13 13 C 1.53005 * 109.47166 * 120.00502 * 2 1 3 14 14 N 1.46894 * 109.47163 * 177.30198 * 13 2 1 15 15 C 1.47907 * 111.00194 * 78.68872 * 14 13 2 16 16 C 1.53990 * 107.05670 * 145.83909 * 15 14 13 17 17 C 1.54592 * 105.14435 * 358.78295 * 16 15 14 18 18 H 1.08992 * 110.72747 * 96.39332 * 17 16 15 19 19 C 1.50701 * 110.72519 * 219.50366 * 17 16 15 20 20 C 1.38422 * 120.02454 * 55.86574 * 19 17 16 21 21 F 1.35097 * 120.01102 * 359.97438 * 20 19 17 22 22 C 1.38477 * 119.97300 * 179.70057 * 20 19 17 23 23 C 1.38207 * 120.02242 * 0.60183 * 22 20 19 24 24 C 1.38205 * 120.05324 * 359.67361 * 23 22 20 25 25 C 1.38415 * 120.02625 * 236.14210 * 19 17 16 26 26 F 1.35105 * 120.01267 * 359.97438 * 25 19 17 27 27 C 1.48531 * 111.00136 * 196.08547 * 14 13 2 28 28 H 1.09009 * 109.46863 * 297.85452 * 1 2 3 29 29 H 1.08997 * 109.47023 * 57.84725 * 1 2 3 30 30 H 1.08999 * 109.47813 * 177.85725 * 1 2 3 31 31 H 1.08997 * 109.47459 * 191.07240 * 3 2 1 32 32 H 1.09005 * 109.47428 * 311.07740 * 3 2 1 33 33 H 1.09003 * 109.47028 * 71.07124 * 3 2 1 34 34 H 1.08998 * 109.47399 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47440 * 300.00647 * 4 2 1 36 36 H 0.96991 * 120.00120 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47351 * 57.29919 * 13 2 1 38 38 H 1.08999 * 109.46497 * 297.30332 * 13 2 1 39 39 H 1.09009 * 109.91263 * 26.49028 * 15 14 13 40 40 H 1.08996 * 109.91872 * 265.20353 * 15 14 13 41 41 H 1.08996 * 110.31216 * 239.85944 * 16 15 14 42 42 H 1.09004 * 110.30761 * 117.69595 * 16 15 14 43 43 H 1.08000 * 119.98854 * 180.32204 * 22 20 19 44 44 H 1.07997 * 119.97211 * 179.70186 * 23 22 20 45 45 H 1.08003 * 119.98983 * 180.02562 * 24 23 22 46 46 H 1.09006 * 110.66756 * 81.84445 * 27 14 13 47 47 H 1.09003 * 110.66627 * 318.71541 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6270 -1.5509 -3.8527 9 14 1.2489 0.3995 -5.2572 10 1 1.7441 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2361 0.3997 -5.2576 13 6 2.0400 -0.7214 1.2492 14 7 3.5075 -0.7781 1.2171 15 6 4.0971 0.5150 1.6268 16 6 5.4018 0.1979 2.3808 17 6 5.4936 -1.3452 2.3977 18 1 6.1249 -1.7029 1.5845 19 6 6.0105 -1.8341 3.7262 20 6 5.3630 -1.4753 4.8958 21 9 4.2677 -0.6860 4.8471 22 6 5.8352 -1.9303 6.1155 23 6 6.9598 -2.7322 6.1661 24 6 7.6103 -3.0864 4.9994 25 6 7.1363 -2.6377 3.7781 26 9 7.7722 -2.9846 2.6376 27 6 4.0227 -1.7821 2.1828 28 1 -0.3633 0.4802 0.9087 29 1 -0.3633 0.5469 -0.8700 30 1 -0.3635 -1.0269 -0.0384 31 1 3.1120 1.4487 -0.1974 32 1 1.5246 2.0101 -0.7747 33 1 1.8469 1.8961 0.9721 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7490 -1.2493 36 1 2.8619 -1.8819 -4.7337 37 1 1.6377 -1.7341 1.2737 38 1 1.7167 -0.1804 2.1385 39 1 3.4080 1.0457 2.2839 40 1 4.3145 1.1196 0.7463 41 1 5.3543 0.5853 3.3985 42 1 6.2562 0.6220 1.8533 43 1 5.3272 -1.6547 7.0279 44 1 7.3301 -3.0826 7.1182 45 1 8.4888 -3.7134 5.0401 46 1 3.9775 -2.7844 1.7567 47 1 3.4669 -1.7356 3.1193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187594972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:44 Heat of formation + Delta-G solvation = -66.318884 kcal Electronic energy + Delta-G solvation = -28274.568663 eV Core-core repulsion = 24285.918095 eV Total energy + Delta-G solvation = -3988.650568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.26900 -49.18387 -39.66049 -38.60189 -36.19061 -32.95614 -31.99191 -30.58956 -30.03792 -28.35690 -26.93304 -26.25452 -25.17684 -23.33756 -22.99195 -22.55531 -20.78639 -20.34704 -18.39053 -17.81500 -17.60878 -16.28416 -16.17833 -16.17412 -15.82122 -15.53393 -15.44964 -15.04224 -14.61920 -14.46538 -13.84725 -13.63827 -13.27802 -13.19752 -13.02378 -12.73474 -12.54594 -12.28659 -12.13319 -12.04338 -11.97276 -11.72007 -11.42802 -11.39426 -10.92323 -10.86450 -10.77480 -10.65484 -10.46579 -10.22442 -10.12710 -10.02759 -9.51976 -9.05702 -9.04970 -8.85507 -8.66549 -8.17734 -7.81526 -5.81598 -3.81155 0.65866 0.67418 3.03692 3.41380 3.46080 3.48079 3.62863 4.06166 4.13113 4.36549 4.42245 4.58860 4.65019 4.81499 4.85446 4.90570 5.18941 5.41784 5.48712 5.51302 5.53340 5.60490 5.65619 5.68156 5.80195 5.81370 5.82116 5.90069 5.92692 6.04095 6.14544 6.18743 6.23998 6.35423 6.38598 6.46842 6.47772 6.57406 6.81593 6.86332 7.13772 7.30914 7.32091 7.43486 7.64184 7.92786 8.14181 8.30698 8.65368 9.26275 9.80152 11.29514 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.003101 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.555175 B = 9027.442424 C = 9854.679344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 C -0.130 4.130 4 C 0.046 3.954 5 C -0.509 4.509 6 H 0.053 0.947 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.062 3.938 14 N -0.495 5.495 15 C 0.037 3.963 16 C -0.124 4.124 17 C -0.056 4.056 18 H 0.103 0.897 19 C -0.137 4.137 20 C 0.132 3.868 21 F -0.125 7.125 22 C -0.165 4.165 23 C -0.069 4.069 24 C -0.164 4.164 25 C 0.133 3.867 26 F -0.126 7.126 27 C 0.043 3.957 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.023 0.977 34 H 0.034 0.966 35 H 0.007 0.993 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.082 0.918 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -1.144 22.643 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.057 4.057 3 C -0.187 4.187 4 C 0.009 3.991 5 C -0.547 4.547 6 H 0.071 0.929 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.066 4.066 14 N -0.218 5.218 15 C -0.091 4.091 16 C -0.162 4.162 17 C -0.075 4.075 18 H 0.121 0.879 19 C -0.139 4.139 20 C 0.112 3.888 21 F -0.103 7.103 22 C -0.184 4.184 23 C -0.088 4.088 24 C -0.183 4.183 25 C 0.113 3.887 26 F -0.104 7.104 27 C -0.085 4.085 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.100 0.900 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.275 -1.366 21.911 23.832 hybrid contribution -0.685 0.651 -0.301 0.992 sum 8.590 -0.715 21.611 23.266 Atomic orbital electron populations 1.21739 0.95938 1.00853 0.99902 1.20585 0.93953 0.95207 0.95986 1.22003 1.01788 0.96324 0.98554 1.19012 0.97373 0.94024 0.88695 1.21320 1.30479 1.11770 0.91135 0.92881 1.24984 0.95574 0.95149 0.98757 1.69971 1.37331 1.23179 1.23031 0.86822 0.79063 0.79853 0.83176 1.20492 1.21538 1.20547 1.22430 0.86544 1.00239 0.97343 1.64725 1.07744 1.03791 1.45516 1.23179 0.94072 0.92995 0.98809 1.22573 0.99168 0.93780 1.00687 1.21002 0.97785 0.96321 0.92380 0.87914 1.19960 0.96668 1.01247 0.96061 1.17215 0.85342 0.93042 0.93172 1.91521 1.50568 1.71128 1.97075 1.21214 0.99013 1.01289 0.96858 1.20808 0.93818 0.95848 0.98279 1.21213 1.02674 1.03461 0.90917 1.17235 0.91900 0.97125 0.82435 1.91548 1.80402 1.90080 1.48385 1.23288 0.92336 0.97821 0.95054 0.95455 0.91749 0.93686 0.92044 0.92814 0.95802 0.94770 0.97485 0.93324 0.91723 0.95917 0.93899 0.89082 0.91585 0.90825 0.84130 0.84040 0.84035 0.89963 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.15 37.16 0.30 -2.16 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.51 6.70 37.15 0.25 -2.26 16 4 C 0.05 1.19 3.83 -27.88 -0.11 1.09 16 5 C -0.51 -14.26 7.79 -34.44 -0.27 -14.53 16 6 H 0.05 1.45 5.74 -52.48 -0.30 1.15 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 9 Si 0.88 22.11 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.06 1.13 4.01 -3.82 -0.02 1.12 16 14 N -0.49 -8.72 4.31 -230.45 -0.99 -9.71 16 15 C 0.04 0.58 4.95 -2.75 -0.01 0.56 16 16 C -0.12 -1.65 6.07 -25.38 -0.15 -1.80 16 17 C -0.06 -0.76 3.18 -89.91 -0.29 -1.05 16 18 H 0.10 1.50 7.22 -51.93 -0.37 1.12 16 19 C -0.14 -1.60 4.96 -104.49 -0.52 -2.12 16 20 C 0.13 1.41 6.41 -39.43 -0.25 1.16 16 21 F -0.12 -1.51 13.59 2.25 0.03 -1.48 16 22 C -0.16 -1.31 10.03 -39.50 -0.40 -1.71 16 23 C -0.07 -0.46 10.04 -39.60 -0.40 -0.85 16 24 C -0.16 -1.30 10.02 -39.51 -0.40 -1.69 16 25 C 0.13 1.43 7.25 -39.43 -0.29 1.14 16 26 F -0.13 -1.53 16.24 2.25 0.04 -1.50 16 27 C 0.04 0.65 5.72 -1.90 -0.01 0.64 16 28 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.06 1.33 6.69 -51.93 -0.35 0.99 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.22 5.22 -51.93 -0.27 0.94 16 32 H 0.05 1.10 6.99 -51.93 -0.36 0.73 16 33 H 0.02 0.40 7.58 -51.93 -0.39 0.00 16 34 H 0.03 0.96 7.53 -51.93 -0.39 0.57 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 38 H 0.02 0.38 7.55 -51.93 -0.39 -0.01 16 39 H 0.04 0.65 6.86 -51.92 -0.36 0.29 16 40 H 0.09 1.51 5.80 -51.93 -0.30 1.21 16 41 H 0.07 0.82 6.18 -51.93 -0.32 0.50 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 46 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.04 0.66 6.02 -51.93 -0.31 0.35 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -31.06 364.02 -9.52 -40.59 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.06 Total: -1.52 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.74 Total: -22.21 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.26 Total: -36.44 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.07 Total: -2.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.06 -9.52 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187594972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.732 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds