Wall clock time and date at job start Tue Mar 31 2020 13:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47658 * 2 1 4 4 C 1.52998 * 109.46838 * 239.99784 * 2 1 3 5 5 C 1.50705 * 109.46905 * 60.00335 * 4 2 1 6 6 H 1.08004 * 120.00128 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00145 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00193 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46933 * 59.99993 * 9 7 5 11 11 H 1.48502 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47053 * 300.00268 * 9 7 5 13 13 C 1.53005 * 109.47166 * 120.00502 * 2 1 3 14 14 N 1.46894 * 109.47163 * 177.30198 * 13 2 1 15 15 C 1.47907 * 111.00194 * 78.68872 * 14 13 2 16 16 C 1.53990 * 107.05670 * 145.83909 * 15 14 13 17 17 C 1.54592 * 105.14435 * 358.78295 * 16 15 14 18 18 H 1.08992 * 110.72747 * 96.39332 * 17 16 15 19 19 C 1.50701 * 110.72519 * 219.50366 * 17 16 15 20 20 C 1.38422 * 120.02454 * 55.86574 * 19 17 16 21 21 F 1.35097 * 120.01102 * 359.97438 * 20 19 17 22 22 C 1.38477 * 119.97300 * 179.70057 * 20 19 17 23 23 C 1.38207 * 120.02242 * 0.60183 * 22 20 19 24 24 C 1.38205 * 120.05324 * 359.67361 * 23 22 20 25 25 C 1.38415 * 120.02625 * 236.14210 * 19 17 16 26 26 F 1.35105 * 120.01267 * 359.97438 * 25 19 17 27 27 C 1.48531 * 111.00136 * 196.08547 * 14 13 2 28 28 H 1.09009 * 109.46863 * 297.85452 * 1 2 3 29 29 H 1.08997 * 109.47023 * 57.84725 * 1 2 3 30 30 H 1.08999 * 109.47813 * 177.85725 * 1 2 3 31 31 H 1.08997 * 109.47459 * 191.07240 * 3 2 1 32 32 H 1.09005 * 109.47428 * 311.07740 * 3 2 1 33 33 H 1.09003 * 109.47028 * 71.07124 * 3 2 1 34 34 H 1.08998 * 109.47399 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47440 * 300.00647 * 4 2 1 36 36 H 0.96991 * 120.00120 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47351 * 57.29919 * 13 2 1 38 38 H 1.08999 * 109.46497 * 297.30332 * 13 2 1 39 39 H 1.09009 * 109.91263 * 26.49028 * 15 14 13 40 40 H 1.08996 * 109.91872 * 265.20353 * 15 14 13 41 41 H 1.08996 * 110.31216 * 239.85944 * 16 15 14 42 42 H 1.09004 * 110.30761 * 117.69595 * 16 15 14 43 43 H 1.08000 * 119.98854 * 180.32204 * 22 20 19 44 44 H 1.07997 * 119.97211 * 179.70186 * 23 22 20 45 45 H 1.08003 * 119.98983 * 180.02562 * 24 23 22 46 46 H 1.09006 * 110.66756 * 81.84445 * 27 14 13 47 47 H 1.09003 * 110.66627 * 318.71541 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6270 -1.5509 -3.8527 9 14 1.2489 0.3995 -5.2572 10 1 1.7441 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2361 0.3997 -5.2576 13 6 2.0400 -0.7214 1.2492 14 7 3.5075 -0.7781 1.2171 15 6 4.0971 0.5150 1.6268 16 6 5.4018 0.1979 2.3808 17 6 5.4936 -1.3452 2.3977 18 1 6.1249 -1.7029 1.5845 19 6 6.0105 -1.8341 3.7262 20 6 5.3630 -1.4753 4.8958 21 9 4.2677 -0.6860 4.8471 22 6 5.8352 -1.9303 6.1155 23 6 6.9598 -2.7322 6.1661 24 6 7.6103 -3.0864 4.9994 25 6 7.1363 -2.6377 3.7781 26 9 7.7722 -2.9846 2.6376 27 6 4.0227 -1.7821 2.1828 28 1 -0.3633 0.4802 0.9087 29 1 -0.3633 0.5469 -0.8700 30 1 -0.3635 -1.0269 -0.0384 31 1 3.1120 1.4487 -0.1974 32 1 1.5246 2.0101 -0.7747 33 1 1.8469 1.8961 0.9721 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7490 -1.2493 36 1 2.8619 -1.8819 -4.7337 37 1 1.6377 -1.7341 1.2737 38 1 1.7167 -0.1804 2.1385 39 1 3.4080 1.0457 2.2839 40 1 4.3145 1.1196 0.7463 41 1 5.3543 0.5853 3.3985 42 1 6.2562 0.6220 1.8533 43 1 5.3272 -1.6547 7.0279 44 1 7.3301 -3.0826 7.1182 45 1 8.4888 -3.7134 5.0401 46 1 3.9775 -2.7844 1.7567 47 1 3.4669 -1.7356 3.1193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187594972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:43 Heat of formation + Delta-G solvation = -82.636715 kcal Electronic energy + Delta-G solvation = -28275.276258 eV Core-core repulsion = 24285.918095 eV Total energy + Delta-G solvation = -3989.358163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.08702 -50.03037 -40.75542 -39.59216 -37.68762 -34.64854 -33.55396 -31.27602 -31.17727 -29.59426 -28.92079 -27.77453 -26.57292 -24.79905 -24.08578 -23.66300 -22.04826 -21.41261 -19.54871 -19.10458 -18.47401 -18.26210 -17.16237 -17.02612 -16.87484 -16.56836 -16.40353 -16.39131 -16.05112 -15.43002 -15.34606 -15.03095 -14.71416 -14.42044 -14.19836 -13.93155 -13.79943 -13.73583 -13.48884 -13.13730 -13.11970 -12.89924 -12.84882 -12.70317 -12.67788 -12.44206 -12.24763 -12.22249 -12.06195 -11.90113 -11.74458 -11.48641 -11.21210 -10.71895 -10.70270 -10.42671 -9.81896 -9.75044 -9.17401 -8.06681 -6.13678 -0.02671 -0.02187 1.40264 1.42857 1.49966 2.37440 2.46754 2.89376 2.97105 3.26089 3.40671 3.50461 3.57286 3.69152 3.89462 3.90505 4.10239 4.16381 4.22828 4.23932 4.30345 4.45137 4.51862 4.61675 4.67522 4.74697 4.79239 4.84984 4.87925 4.90078 4.94328 4.95923 4.97649 5.08361 5.11474 5.17469 5.20887 5.22946 5.27496 5.51771 5.57966 5.64869 5.73678 5.79402 5.99299 6.04633 6.09291 6.25625 6.44759 7.04471 7.52556 9.04918 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.003101 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.555175 B = 9027.442424 C = 9854.679344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.121 4.121 4 C 0.061 3.939 5 C -0.516 4.516 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.070 3.930 14 N -0.525 5.525 15 C 0.040 3.960 16 C -0.116 4.116 17 C -0.051 4.051 18 H 0.081 0.919 19 C -0.155 4.155 20 C 0.113 3.887 21 F -0.137 7.137 22 C -0.156 4.156 23 C -0.053 4.053 24 C -0.156 4.156 25 C 0.108 3.892 26 F -0.143 7.143 27 C 0.048 3.952 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.001 0.999 35 H -0.031 1.031 36 H 0.257 0.743 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.167 0.833 44 H 0.184 0.816 45 H 0.166 0.834 46 H 0.066 0.934 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.129 -0.199 25.506 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.057 4.057 3 C -0.178 4.178 4 C 0.024 3.976 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.194 1.194 13 C -0.058 4.058 14 N -0.249 5.249 15 C -0.088 4.088 16 C -0.154 4.154 17 C -0.070 4.070 18 H 0.100 0.900 19 C -0.158 4.158 20 C 0.094 3.906 21 F -0.115 7.115 22 C -0.174 4.174 23 C -0.071 4.071 24 C -0.174 4.174 25 C 0.088 3.912 26 F -0.122 7.122 27 C -0.080 4.080 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.019 0.981 35 H -0.013 1.013 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.184 0.816 44 H 0.202 0.798 45 H 0.183 0.817 46 H 0.085 0.915 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.306 -0.407 24.786 26.479 hybrid contribution -0.645 0.290 -1.116 1.321 sum 8.661 -0.117 23.670 25.205 Atomic orbital electron populations 1.21667 0.94743 1.00635 1.00916 1.20503 0.94954 0.95694 0.94516 1.21900 1.00887 0.95196 0.99850 1.18771 0.95105 0.92485 0.91281 1.21717 1.29940 1.11791 0.91984 0.92094 1.25893 0.95862 0.95940 1.02385 1.70135 1.38952 1.25000 1.23719 0.85702 0.78865 0.78815 0.78849 1.19409 1.21451 1.19409 1.22261 0.87100 0.99655 0.96745 1.64619 1.07564 1.05403 1.47292 1.23117 0.95220 0.91922 0.98496 1.22512 0.98113 0.93673 1.01095 1.20810 0.96251 0.96474 0.93430 0.90037 1.19809 0.97838 1.02836 0.95283 1.17449 0.85428 0.93857 0.93869 1.91481 1.51247 1.71632 1.97167 1.21585 0.99065 1.00247 0.96533 1.21317 0.92435 0.93971 0.99370 1.21571 1.03115 1.02702 0.90033 1.17576 0.92308 0.98206 0.83060 1.91502 1.80719 1.90376 1.49559 1.23214 0.93672 0.96476 0.94627 0.91955 0.93306 0.94355 0.93041 0.94113 0.92613 0.98086 1.01288 0.93430 0.92622 0.93640 0.92921 0.90660 0.90205 0.90480 0.81573 0.79845 0.81675 0.91549 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 8.15 71.98 0.59 -4.07 16 2 C -0.06 -2.34 0.60 -52.18 -0.03 -2.37 16 3 C -0.12 -4.64 6.70 71.98 0.48 -4.15 16 4 C 0.06 3.30 3.83 29.85 0.11 3.41 16 5 C -0.52 -29.66 7.79 25.60 0.20 -29.46 16 6 H 0.06 3.35 5.74 -2.91 -0.02 3.33 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 9 Si 0.95 46.01 29.54 68.60 2.03 48.04 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 C 0.07 2.57 4.01 86.31 0.35 2.91 16 14 N -0.53 -19.13 4.31 -883.00 -3.81 -22.94 16 15 C 0.04 1.25 4.95 86.44 0.43 1.67 16 16 C -0.12 -3.10 6.07 31.47 0.19 -2.91 16 17 C -0.05 -1.43 3.18 -10.33 -0.03 -1.46 16 18 H 0.08 2.59 7.22 -2.39 -0.02 2.57 16 19 C -0.16 -3.60 4.96 -19.78 -0.10 -3.70 16 20 C 0.11 2.25 6.41 22.37 0.14 2.40 16 21 F -0.14 -3.12 13.59 44.97 0.61 -2.51 16 22 C -0.16 -1.95 10.03 22.32 0.22 -1.72 16 23 C -0.05 -0.48 10.04 22.25 0.22 -0.25 16 24 C -0.16 -2.05 10.02 22.32 0.22 -1.82 16 25 C 0.11 2.27 7.25 22.37 0.16 2.44 16 26 F -0.14 -3.62 16.24 44.97 0.73 -2.89 16 27 C 0.05 1.51 5.72 86.65 0.50 2.01 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.05 1.99 6.69 -2.39 -0.02 1.97 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 2.06 5.22 -2.39 -0.01 2.05 16 32 H 0.04 1.63 6.99 -2.38 -0.02 1.61 16 33 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 34 H 0.00 0.04 7.53 -2.39 -0.02 0.03 16 35 H -0.03 -1.91 8.14 -2.38 -0.02 -1.93 16 36 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.06 2.09 8.00 -2.39 -0.02 2.07 16 38 H 0.05 1.45 7.55 -2.39 -0.02 1.44 16 39 H 0.05 1.52 6.86 -2.38 -0.02 1.51 16 40 H 0.08 2.57 5.80 -2.39 -0.01 2.56 16 41 H 0.08 1.91 6.18 -2.39 -0.01 1.90 16 42 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 45 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.05 1.61 6.02 -2.39 -0.01 1.60 16 Total: -1.00 -70.67 364.02 4.93 -65.74 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.78 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.12 Total: -36.89 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.52 Total: -82.26 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.34 Total: -5.40 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.67 4.93 -65.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187594972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.897 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds