Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.62308 * 2 1 4 4 C 1.51260 * 109.62831 * 239.42465 * 2 1 3 5 5 O 1.20764 * 120.85648 * 111.64750 * 4 2 1 6 6 C 1.51267 * 118.30042 * 291.63615 * 4 2 1 7 7 C 1.53235 * 108.53591 * 308.64485 * 6 4 2 8 8 C 1.52991 * 109.40767 * 54.63227 * 7 6 4 9 9 H 1.08995 * 109.41097 * 56.50145 * 8 7 6 10 10 C 1.50695 * 109.43252 * 176.30611 * 8 7 6 11 11 O 1.21280 * 120.00258 * 41.09603 * 10 8 7 12 12 N 1.34779 * 120.00063 * 221.10638 * 10 8 7 13 13 C 1.47025 * 125.64680 * 5.01929 * 12 10 8 14 14 C 1.54329 * 107.26647 * 178.85516 * 13 12 10 15 15 C 1.55162 * 103.01881 * 338.14083 * 14 13 12 16 16 O 1.42903 * 111.00471 * 277.23039 * 15 14 13 17 17 C 1.50698 * 111.00091 * 153.38233 * 15 14 13 18 18 H 1.08000 * 120.00097 * 247.80474 * 17 15 14 19 19 C 1.37886 * 120.00279 * 67.80580 * 17 15 14 20 20 N 1.31513 * 119.99760 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00118 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46794 * 59.99728 * 21 19 17 23 23 H 1.48497 * 109.46717 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46971 * 300.00067 * 21 19 17 25 25 C 1.47422 * 125.64969 * 185.33193 * 12 10 8 26 26 C 1.52966 * 109.80019 * 296.41030 * 8 7 6 27 27 C 1.53003 * 109.47833 * 303.60609 * 26 8 7 28 28 C 1.52999 * 109.48111 * 183.58118 * 26 8 7 29 29 H 1.09002 * 109.46844 * 299.61758 * 1 2 3 30 30 H 1.08994 * 109.47207 * 59.61980 * 1 2 3 31 31 H 1.08996 * 109.47139 * 179.62609 * 1 2 3 32 32 H 1.08998 * 109.63423 * 68.36258 * 6 4 2 33 33 H 1.09003 * 109.62862 * 188.93592 * 6 4 2 34 34 H 1.09004 * 109.48192 * 174.60528 * 7 6 4 35 35 H 1.08991 * 109.48411 * 294.63700 * 7 6 4 36 36 H 1.09001 * 109.87939 * 298.40110 * 13 12 10 37 37 H 1.08998 * 109.87882 * 59.56119 * 13 12 10 38 38 H 1.09000 * 110.85035 * 219.67636 * 14 13 12 39 39 H 1.08999 * 110.67070 * 96.52443 * 14 13 12 40 40 H 0.96694 * 113.99851 * 292.20331 * 16 15 14 41 41 H 0.96997 * 119.99921 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.37206 * 322.93100 * 25 12 10 43 43 H 1.09007 * 110.36735 * 85.25121 * 25 12 10 44 44 H 1.08991 * 109.47521 * 299.96861 * 27 26 8 45 45 H 1.09003 * 109.46389 * 179.97438 * 27 26 8 46 46 H 1.08991 * 109.47495 * 59.97684 * 27 26 8 47 47 H 1.09005 * 109.47029 * 186.17374 * 28 26 8 48 48 H 1.08998 * 109.46692 * 306.16881 * 28 26 8 49 49 H 1.09001 * 109.47307 * 66.16932 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0381 -0.7247 -1.2266 5 8 2.6064 -0.1265 -2.1084 6 6 1.8164 -2.2181 -1.3205 7 6 2.3208 -2.8676 -0.0275 8 6 1.6429 -2.2040 1.1728 9 1 0.5609 -2.2797 1.0653 10 6 2.0693 -2.9019 2.4385 11 8 3.2245 -3.2413 2.5844 12 7 1.1667 -3.1493 3.4085 13 6 -0.2776 -2.8886 3.3217 14 6 -0.9079 -3.3546 4.6511 15 6 0.1351 -4.3653 5.1971 16 8 -0.0420 -5.6540 4.6055 17 6 0.0697 -4.4498 6.7003 18 1 0.8909 -4.0829 7.2980 19 6 -1.0387 -4.9957 7.3126 20 7 -2.0389 -5.4420 6.5847 21 14 -1.1194 -5.1011 9.1759 22 1 -1.0262 -3.7361 9.7533 23 1 -2.4056 -5.7228 9.5811 24 1 0.0093 -5.9275 9.6742 25 6 1.4652 -3.7200 4.7346 26 6 2.0447 -0.7298 1.2451 27 6 3.5694 -0.6190 1.3079 28 6 1.4350 -0.0956 2.4969 29 1 -0.3633 0.5079 0.8934 30 1 -0.3633 0.5197 -0.8865 31 1 -0.3633 -1.0276 -0.0067 32 1 0.7530 -2.4236 -1.4427 33 1 2.3694 -2.6176 -2.1706 34 1 2.0819 -3.9311 -0.0376 35 1 3.4005 -2.7382 0.0472 36 1 -0.4539 -1.8225 3.1791 37 1 -0.7066 -3.4515 2.4927 38 1 -1.8652 -3.8453 4.4756 39 1 -1.0264 -2.5149 5.3359 40 1 -0.8612 -6.0969 4.8656 41 1 -2.8188 -5.8257 7.0155 42 1 2.2462 -4.4761 4.6552 43 1 1.7663 -2.9338 5.4270 44 1 3.9354 -1.1386 2.1933 45 1 3.8554 0.4316 1.3589 46 1 4.0035 -1.0708 0.4161 47 1 1.6288 0.9770 2.4919 48 1 0.3592 -0.2705 2.5055 49 1 1.8827 -0.5416 3.3851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649029406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = -138.503529 kcal Electronic energy + Delta-G solvation = -29971.332524 eV Core-core repulsion = 26090.639310 eV Total energy + Delta-G solvation = -3880.693214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29527 -39.36339 -37.79811 -36.77055 -34.37210 -33.33084 -32.18826 -31.60249 -30.01113 -28.73922 -27.76934 -27.27170 -25.21590 -24.73861 -22.98260 -22.13812 -20.83340 -19.79499 -18.93458 -17.68997 -17.34369 -16.92050 -16.22599 -15.87165 -15.50573 -15.02939 -14.85443 -14.71710 -14.60531 -14.22557 -13.99283 -13.74518 -13.27821 -13.07125 -12.95632 -12.70441 -12.60253 -12.25958 -12.13645 -12.07545 -11.87284 -11.80571 -11.76158 -11.60470 -11.46512 -11.36825 -11.32290 -10.92282 -10.86774 -10.72869 -10.64663 -10.54542 -10.32567 -10.08784 -9.48380 -9.47595 -9.23391 -8.72375 -8.26398 -8.00095 -6.34968 -4.42757 1.77671 2.98877 3.17647 3.23056 3.25833 3.47564 3.86997 4.21759 4.28756 4.43626 4.57033 4.71403 4.83468 4.90827 4.93899 5.04051 5.13649 5.18444 5.29084 5.35459 5.40993 5.48903 5.51763 5.61871 5.63862 5.65319 5.69879 5.79142 5.81609 5.85268 5.91130 5.93204 5.99742 6.03730 6.14948 6.20260 6.29506 6.37321 6.39881 6.61026 6.82374 6.92696 7.24774 7.27032 7.30501 7.68440 7.94047 8.10970 8.57713 8.62801 9.26453 9.42902 10.72615 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.003334 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.281219 B = 8397.325993 C = 8472.053205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 H 0.097 0.903 4 C 0.371 3.629 5 O -0.461 6.461 6 C -0.169 4.169 7 C -0.102 4.102 8 C -0.101 4.101 9 H 0.094 0.906 10 C 0.533 3.467 11 O -0.550 6.550 12 N -0.603 5.603 13 C 0.098 3.902 14 C -0.139 4.139 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.119 3.881 26 C -0.038 4.038 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.385 0.615 41 H 0.270 0.730 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 9.350 -11.384 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 H 0.115 0.885 4 C 0.247 3.753 5 O -0.334 6.334 6 C -0.207 4.207 7 C -0.139 4.139 8 C -0.122 4.122 9 H 0.112 0.888 10 C 0.321 3.679 11 O -0.429 6.429 12 N -0.335 5.335 13 C -0.025 4.025 14 C -0.178 4.178 15 C 0.209 3.791 16 O -0.395 6.395 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.129 4.129 20 N -0.538 5.538 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.003 4.003 26 C -0.038 4.038 27 C -0.209 4.209 28 C -0.206 4.206 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.178 9.558 -12.083 15.559 hybrid contribution -0.931 -0.248 1.351 1.660 sum 1.246 9.310 -10.731 14.262 Atomic orbital electron populations 1.21872 0.92460 1.03095 1.03048 1.22002 0.98027 1.00724 0.93899 0.88458 1.24869 0.73691 0.91300 0.85488 1.90392 1.32314 1.70866 1.39796 1.22330 1.04115 0.94063 1.00163 1.21461 1.01867 1.00017 0.90601 1.21439 1.02155 0.94895 0.93738 0.88782 1.19875 0.85011 0.79176 0.83796 1.90646 1.18655 1.53368 1.80245 1.48602 1.08043 1.61361 1.15513 1.22230 0.80588 0.98906 1.00799 1.23200 1.00975 1.00677 0.92952 1.19555 0.87693 0.80963 0.90866 1.86102 1.47596 1.32697 1.73056 1.21453 1.03701 1.41404 0.90952 0.91732 1.24981 0.94876 0.93934 0.99126 1.69546 1.07424 1.40827 1.35958 0.86464 0.77476 0.78559 0.84433 1.20036 1.21092 1.19970 1.22372 0.99678 0.96734 0.81520 1.20381 0.96713 0.92359 0.94393 1.22079 0.93520 1.01697 1.03633 1.22057 1.01291 1.00645 0.96583 0.90617 0.92198 0.91498 0.88160 0.89007 0.90200 0.89728 0.92597 0.92524 0.89941 0.91409 0.76271 0.91998 0.91095 0.91235 0.90368 0.92615 0.92531 0.92102 0.91536 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.40 37.16 0.31 -0.85 16 2 C -0.13 -1.24 2.24 -91.38 -0.21 -1.44 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.37 4.15 5.09 -28.48 -0.14 4.01 16 5 O -0.46 -6.56 17.89 6.00 0.11 -6.46 16 6 C -0.17 -1.62 5.89 -27.48 -0.16 -1.78 16 7 C -0.10 -1.18 4.63 -26.61 -0.12 -1.30 16 8 C -0.10 -1.26 1.41 -91.80 -0.13 -1.38 16 9 H 0.09 1.04 5.07 -51.93 -0.26 0.78 16 10 C 0.53 9.02 5.08 -10.99 -0.06 8.97 16 11 O -0.55 -11.03 15.02 5.56 0.08 -10.94 16 12 N -0.60 -10.85 3.23 -170.52 -0.55 -11.41 16 13 C 0.10 1.58 5.89 -3.06 -0.02 1.56 16 14 C -0.14 -2.77 5.64 -24.89 -0.14 -2.91 16 15 C 0.25 5.74 0.89 -89.62 -0.08 5.66 16 16 O -0.58 -14.47 13.18 -35.23 -0.46 -14.94 16 17 C -0.54 -13.44 8.25 -34.44 -0.28 -13.72 16 18 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 20 N -0.90 -22.31 10.79 55.43 0.60 -21.71 16 21 Si 0.90 19.58 29.54 -169.99 -5.02 14.55 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 25 C 0.12 2.51 6.11 -2.53 -0.02 2.49 16 26 C -0.04 -0.42 0.32 -154.41 -0.05 -0.47 16 27 C -0.15 -1.87 7.51 37.16 0.28 -1.59 16 28 C -0.15 -1.62 7.02 37.16 0.26 -1.36 16 29 H 0.07 0.55 6.51 -51.93 -0.34 0.21 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.50 5.97 -51.93 -0.31 0.19 16 32 H 0.10 0.77 7.79 -51.93 -0.40 0.36 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.08 6.05 -51.93 -0.31 0.77 16 36 H 0.06 0.75 5.98 -51.93 -0.31 0.44 16 37 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 38 H 0.08 1.74 7.85 -51.93 -0.41 1.33 16 39 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 40 H 0.39 9.66 6.93 45.56 0.32 9.97 16 41 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 42 H 0.07 1.63 7.99 -51.93 -0.41 1.22 16 43 H 0.07 1.42 8.01 -51.93 -0.42 1.00 16 44 H 0.08 1.14 6.32 -51.93 -0.33 0.81 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.71 5.60 -51.93 -0.29 0.41 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.67 4.93 -51.93 -0.26 0.41 16 49 H 0.06 0.85 7.30 -51.93 -0.38 0.48 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -28.36 363.82 -7.44 -35.80 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.03 Total: 12.03 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.65 Total: -2.41 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.05 Total: -33.12 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.27 Total: -32.34 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.36 -7.44 -35.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.701 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds