Wall clock time and date at job start Tue Mar 31 2020 15:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.62308 * 2 1 4 4 C 1.51260 * 109.62831 * 239.42465 * 2 1 3 5 5 O 1.20764 * 120.85648 * 111.64750 * 4 2 1 6 6 C 1.51267 * 118.30042 * 291.63615 * 4 2 1 7 7 C 1.53235 * 108.53591 * 308.64485 * 6 4 2 8 8 C 1.52991 * 109.40767 * 54.63227 * 7 6 4 9 9 H 1.08995 * 109.41097 * 56.50145 * 8 7 6 10 10 C 1.50695 * 109.43252 * 176.30611 * 8 7 6 11 11 O 1.21280 * 120.00258 * 41.09603 * 10 8 7 12 12 N 1.34779 * 120.00063 * 221.10638 * 10 8 7 13 13 C 1.47025 * 125.64680 * 5.01929 * 12 10 8 14 14 C 1.54329 * 107.26647 * 178.85516 * 13 12 10 15 15 C 1.55162 * 103.01881 * 338.14083 * 14 13 12 16 16 O 1.42903 * 111.00471 * 277.23039 * 15 14 13 17 17 C 1.50698 * 111.00091 * 153.38233 * 15 14 13 18 18 H 1.08000 * 120.00097 * 247.80474 * 17 15 14 19 19 C 1.37886 * 120.00279 * 67.80580 * 17 15 14 20 20 N 1.31513 * 119.99760 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00118 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46794 * 59.99728 * 21 19 17 23 23 H 1.48497 * 109.46717 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46971 * 300.00067 * 21 19 17 25 25 C 1.47422 * 125.64969 * 185.33193 * 12 10 8 26 26 C 1.52966 * 109.80019 * 296.41030 * 8 7 6 27 27 C 1.53003 * 109.47833 * 303.60609 * 26 8 7 28 28 C 1.52999 * 109.48111 * 183.58118 * 26 8 7 29 29 H 1.09002 * 109.46844 * 299.61758 * 1 2 3 30 30 H 1.08994 * 109.47207 * 59.61980 * 1 2 3 31 31 H 1.08996 * 109.47139 * 179.62609 * 1 2 3 32 32 H 1.08998 * 109.63423 * 68.36258 * 6 4 2 33 33 H 1.09003 * 109.62862 * 188.93592 * 6 4 2 34 34 H 1.09004 * 109.48192 * 174.60528 * 7 6 4 35 35 H 1.08991 * 109.48411 * 294.63700 * 7 6 4 36 36 H 1.09001 * 109.87939 * 298.40110 * 13 12 10 37 37 H 1.08998 * 109.87882 * 59.56119 * 13 12 10 38 38 H 1.09000 * 110.85035 * 219.67636 * 14 13 12 39 39 H 1.08999 * 110.67070 * 96.52443 * 14 13 12 40 40 H 0.96694 * 113.99851 * 292.20331 * 16 15 14 41 41 H 0.96997 * 119.99921 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.37206 * 322.93100 * 25 12 10 43 43 H 1.09007 * 110.36735 * 85.25121 * 25 12 10 44 44 H 1.08991 * 109.47521 * 299.96861 * 27 26 8 45 45 H 1.09003 * 109.46389 * 179.97438 * 27 26 8 46 46 H 1.08991 * 109.47495 * 59.97684 * 27 26 8 47 47 H 1.09005 * 109.47029 * 186.17374 * 28 26 8 48 48 H 1.08998 * 109.46692 * 306.16881 * 28 26 8 49 49 H 1.09001 * 109.47307 * 66.16932 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0381 -0.7247 -1.2266 5 8 2.6064 -0.1265 -2.1084 6 6 1.8164 -2.2181 -1.3205 7 6 2.3208 -2.8676 -0.0275 8 6 1.6429 -2.2040 1.1728 9 1 0.5609 -2.2797 1.0653 10 6 2.0693 -2.9019 2.4385 11 8 3.2245 -3.2413 2.5844 12 7 1.1667 -3.1493 3.4085 13 6 -0.2776 -2.8886 3.3217 14 6 -0.9079 -3.3546 4.6511 15 6 0.1351 -4.3653 5.1971 16 8 -0.0420 -5.6540 4.6055 17 6 0.0697 -4.4498 6.7003 18 1 0.8909 -4.0829 7.2980 19 6 -1.0387 -4.9957 7.3126 20 7 -2.0389 -5.4420 6.5847 21 14 -1.1194 -5.1011 9.1759 22 1 -1.0262 -3.7361 9.7533 23 1 -2.4056 -5.7228 9.5811 24 1 0.0093 -5.9275 9.6742 25 6 1.4652 -3.7200 4.7346 26 6 2.0447 -0.7298 1.2451 27 6 3.5694 -0.6190 1.3079 28 6 1.4350 -0.0956 2.4969 29 1 -0.3633 0.5079 0.8934 30 1 -0.3633 0.5197 -0.8865 31 1 -0.3633 -1.0276 -0.0067 32 1 0.7530 -2.4236 -1.4427 33 1 2.3694 -2.6176 -2.1706 34 1 2.0819 -3.9311 -0.0376 35 1 3.4005 -2.7382 0.0472 36 1 -0.4539 -1.8225 3.1791 37 1 -0.7066 -3.4515 2.4927 38 1 -1.8652 -3.8453 4.4756 39 1 -1.0264 -2.5149 5.3359 40 1 -0.8612 -6.0969 4.8656 41 1 -2.8188 -5.8257 7.0155 42 1 2.2462 -4.4761 4.6552 43 1 1.7663 -2.9338 5.4270 44 1 3.9354 -1.1386 2.1933 45 1 3.8554 0.4316 1.3589 46 1 4.0035 -1.0708 0.4161 47 1 1.6288 0.9770 2.4919 48 1 0.3592 -0.2705 2.5055 49 1 1.8827 -0.5416 3.3851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000649029406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:01 Heat of formation + Delta-G solvation = -156.523282 kcal Electronic energy + Delta-G solvation = -29972.113919 eV Core-core repulsion = 26090.639310 eV Total energy + Delta-G solvation = -3881.474609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32225 -40.62826 -39.18339 -38.03678 -36.07398 -34.21283 -34.11216 -32.48543 -31.52984 -30.17259 -29.04753 -28.15221 -26.87159 -25.58378 -24.23326 -23.31697 -21.90161 -21.42479 -20.18186 -19.14614 -18.67632 -18.25993 -17.23709 -16.98406 -16.89649 -16.62980 -16.13474 -15.97831 -15.70669 -15.56879 -15.10878 -14.84492 -14.72175 -14.38135 -14.03677 -13.77846 -13.61471 -13.57767 -13.46486 -13.28836 -13.15195 -13.06136 -12.90020 -12.80503 -12.66320 -12.57103 -12.48353 -12.47068 -12.28672 -12.20311 -11.82912 -11.74133 -11.65422 -11.30659 -11.19859 -10.69177 -10.53792 -10.33991 -10.10604 -9.47245 -8.23484 -6.37457 0.91474 1.44167 1.46760 1.53039 1.66522 2.09658 2.41511 3.01725 3.05395 3.36991 3.53301 3.55078 3.77355 3.87898 4.01686 4.02801 4.08810 4.18350 4.23183 4.33922 4.36396 4.39173 4.49681 4.57831 4.61042 4.65874 4.72316 4.73217 4.81162 4.86241 4.89943 4.93350 4.98939 5.03291 5.10095 5.12542 5.17692 5.22640 5.32345 5.34795 5.36432 5.48038 5.50269 5.58377 5.80339 6.08967 6.45792 6.64576 6.72595 7.23767 7.34009 7.48827 8.82345 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.003334 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.281219 B = 8397.325993 C = 8472.053205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 H 0.101 0.899 4 C 0.373 3.627 5 O -0.495 6.495 6 C -0.162 4.162 7 C -0.100 4.100 8 C -0.092 4.092 9 H 0.119 0.881 10 C 0.530 3.470 11 O -0.588 6.588 12 N -0.606 5.606 13 C 0.104 3.896 14 C -0.130 4.130 15 C 0.235 3.765 16 O -0.596 6.596 17 C -0.563 4.563 18 H 0.054 0.946 19 C 0.038 3.962 20 N -0.908 5.908 21 Si 0.957 3.043 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.125 3.875 26 C -0.032 4.032 27 C -0.151 4.151 28 C -0.148 4.148 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.381 0.619 41 H 0.272 0.728 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.049 0.951 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 10.855 -12.440 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 H 0.119 0.881 4 C 0.251 3.749 5 O -0.371 6.371 6 C -0.199 4.199 7 C -0.138 4.138 8 C -0.113 4.113 9 H 0.137 0.863 10 C 0.321 3.679 11 O -0.469 6.469 12 N -0.337 5.337 13 C -0.018 4.018 14 C -0.168 4.168 15 C 0.194 3.806 16 O -0.406 6.406 17 C -0.601 4.601 18 H 0.073 0.927 19 C -0.163 4.163 20 N -0.548 5.548 21 Si 0.783 3.217 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.206 1.206 25 C 0.002 3.998 26 C -0.033 4.033 27 C -0.208 4.208 28 C -0.204 4.204 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.232 0.768 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.293 11.072 -13.147 17.190 hybrid contribution -0.269 -0.762 1.714 1.895 sum 0.024 10.309 -11.433 15.395 Atomic orbital electron populations 1.21939 0.90347 1.04092 1.04200 1.21958 0.99657 1.00343 0.91918 0.88057 1.25231 0.72440 0.91951 0.85323 1.90394 1.33834 1.71622 1.41203 1.22322 1.05964 0.92747 0.98902 1.21416 1.00837 1.00182 0.91351 1.21500 1.03541 0.95138 0.91138 0.86315 1.20721 0.84233 0.78410 0.84557 1.90632 1.20408 1.54791 1.81057 1.48649 1.09129 1.61383 1.14561 1.22288 0.78927 1.01450 0.99095 1.22975 0.99629 0.99461 0.94762 1.19755 0.89620 0.80979 0.90212 1.86090 1.47439 1.33879 1.73210 1.21706 1.03786 1.42257 0.92363 0.92738 1.25561 0.94602 0.93616 1.02497 1.69604 1.07509 1.40660 1.37004 0.85628 0.77219 0.78511 0.80349 1.19497 1.20475 1.20627 1.22088 0.98018 0.96069 0.83636 1.20348 0.95684 0.91613 0.95649 1.22045 0.94806 1.02019 1.01916 1.22058 1.01895 1.01550 0.94946 0.89402 0.91263 0.90546 0.85191 0.88531 0.90309 0.91587 0.88691 0.90852 0.91100 0.91652 0.76800 0.91821 0.94076 0.91168 0.93213 0.91315 0.93156 0.90320 0.89924 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.40 71.98 0.60 -1.04 16 2 C -0.12 -1.94 2.24 -11.29 -0.03 -1.97 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.37 7.41 5.09 29.46 0.15 7.56 16 5 O -0.49 -13.30 17.89 -1.46 -0.03 -13.32 16 6 C -0.16 -2.66 5.89 30.11 0.18 -2.48 16 7 C -0.10 -2.16 4.63 30.67 0.14 -2.02 16 8 C -0.09 -2.09 1.41 -11.56 -0.02 -2.11 16 9 H 0.12 2.12 5.07 -2.39 -0.01 2.11 16 10 C 0.53 17.66 5.08 87.66 0.45 18.10 16 11 O -0.59 -24.21 15.02 -3.03 -0.05 -24.26 16 12 N -0.61 -21.32 3.23 -811.79 -2.63 -23.95 16 13 C 0.10 3.11 5.89 86.73 0.51 3.62 16 14 C -0.13 -5.02 5.64 31.79 0.18 -4.84 16 15 C 0.23 10.89 0.89 -10.15 -0.01 10.88 16 16 O -0.60 -30.00 13.18 -148.98 -1.96 -31.96 16 17 C -0.56 -28.61 8.25 25.60 0.21 -28.40 16 18 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 19 C 0.04 1.90 5.30 84.66 0.45 2.35 16 20 N -0.91 -44.95 10.79 21.45 0.23 -44.71 16 21 Si 0.96 40.01 29.54 68.60 2.03 42.03 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.12 5.40 6.11 86.85 0.53 5.94 16 26 C -0.03 -0.64 0.32 -52.12 -0.02 -0.66 16 27 C -0.15 -3.63 7.51 71.98 0.54 -3.09 16 28 C -0.15 -2.79 7.02 71.98 0.51 -2.29 16 29 H 0.09 0.81 6.51 -2.39 -0.02 0.79 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.72 5.97 -2.39 -0.01 0.70 16 32 H 0.13 1.41 7.79 -2.39 -0.02 1.39 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.07 1.68 6.05 -2.39 -0.01 1.67 16 36 H 0.10 2.13 5.98 -2.39 -0.01 2.11 16 37 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 38 H 0.07 2.91 7.85 -2.39 -0.02 2.89 16 39 H 0.06 2.53 8.03 -2.39 -0.02 2.51 16 40 H 0.38 19.40 6.93 -74.06 -0.51 18.88 16 41 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 42 H 0.04 1.98 7.99 -2.39 -0.02 1.96 16 43 H 0.07 2.97 8.01 -2.38 -0.02 2.95 16 44 H 0.05 1.49 6.32 -2.39 -0.02 1.47 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 1.25 5.60 -2.39 -0.01 1.24 16 47 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.08 1.28 4.93 -2.39 -0.01 1.27 16 49 H 0.04 0.94 7.30 -2.39 -0.02 0.92 16 Total: -1.00 -63.35 363.82 2.43 -60.92 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.46 Total: 35.69 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 4.38 Total: -0.45 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -2.39 Total: -68.66 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -2.04 Total: -69.54 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -63.35 2.43 -60.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.599 kcal (2) G-P(sol) polarization free energy of solvation -63.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds