Wall clock time and date at job start Tue Mar 31 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 117.00163 * 2 1 4 4 C 1.38543 * 120.04295 * 0.02562 * 3 2 1 5 5 C 1.38665 * 119.94850 * 179.97438 * 4 3 2 6 6 O 1.35979 * 119.97780 * 179.97438 * 5 4 3 7 7 C 1.38690 * 120.03639 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.95910 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47021 * 285.00365 * 8 7 5 10 10 C 1.46903 * 110.99815 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47425 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47091 * 300.00475 * 11 10 9 13 13 C 1.53004 * 109.46708 * 60.00043 * 11 10 9 14 14 C 1.52994 * 109.47217 * 180.02562 * 11 10 9 15 15 C 1.50707 * 109.47020 * 180.02562 * 14 11 10 16 16 H 1.07996 * 119.99882 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00074 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00326 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46967 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47617 * 119.99725 * 19 17 15 22 22 H 1.48500 * 109.47226 * 240.00261 * 19 17 15 23 23 C 1.38239 * 120.08976 * 359.97438 * 7 5 4 24 24 C 1.38530 * 120.05094 * 0.02562 * 23 7 5 25 25 O 1.36077 * 120.01801 * 179.97438 * 24 23 7 26 26 C 1.42900 * 116.99770 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47064 * 299.99773 * 1 2 3 28 28 H 1.08990 * 109.47154 * 59.99639 * 1 2 3 29 29 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.02353 * 0.24593 * 4 3 2 31 31 H 0.96703 * 113.99814 * 90.00677 * 6 5 4 32 32 H 1.09002 * 109.46292 * 45.00477 * 8 7 5 33 33 H 1.08999 * 109.47067 * 164.99889 * 8 7 5 34 34 H 1.00899 * 111.00136 * 56.04531 * 9 8 7 35 35 H 1.09003 * 109.47072 * 300.00370 * 10 9 8 36 36 H 1.09000 * 109.46772 * 59.99946 * 10 9 8 37 37 H 1.09004 * 109.47459 * 59.99298 * 12 11 10 38 38 H 1.09000 * 109.47182 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.47034 * 299.99822 * 12 11 10 40 40 H 1.09007 * 109.46684 * 60.00415 * 13 11 10 41 41 H 1.09000 * 109.46889 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47446 * 300.00310 * 13 11 10 43 43 H 1.08996 * 109.47127 * 299.99984 * 14 11 10 44 44 H 1.09000 * 109.47058 * 60.00085 * 14 11 10 45 45 H 0.96999 * 120.00099 * 179.97438 * 18 17 15 46 46 H 1.08000 * 119.97475 * 179.97438 * 23 7 5 47 47 H 1.09002 * 109.46980 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47276 * 300.00518 * 26 25 24 49 49 H 1.08998 * 109.46877 * 60.00330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3742 0.0005 5 6 1.9243 3.6086 0.0011 6 8 1.1852 4.7500 0.0011 7 6 3.3094 3.6798 0.0016 8 6 3.9940 5.0223 0.0016 9 7 3.8976 5.6211 -1.3363 10 6 4.5552 6.9342 -1.3740 11 6 4.4348 7.5248 -2.7803 12 6 5.1075 6.5884 -3.7859 13 6 2.9566 7.6841 -3.1416 14 6 5.1202 8.8921 -2.8196 15 6 5.0010 9.4740 -4.2047 16 1 4.4881 8.9235 -4.9794 17 6 5.5477 10.7088 -4.4830 18 7 6.1728 11.3790 -3.5397 19 14 5.4007 11.4298 -6.1999 20 1 4.6575 10.4848 -7.0717 21 1 4.6706 12.7213 -6.1336 22 1 6.7574 11.6562 -6.7595 23 6 4.0629 2.5208 0.0021 24 6 3.4358 1.2856 0.0016 25 8 4.1782 0.1452 0.0016 26 6 5.5992 0.2962 0.0016 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2142 2.3189 0.0050 31 1 0.9712 5.0800 0.8845 32 1 3.5114 5.6761 0.7281 33 1 5.0433 4.8951 0.2680 34 1 2.9357 5.6901 -1.6331 35 1 4.0761 7.6012 -0.6571 36 1 5.6083 6.8206 -1.1169 37 1 4.6196 5.6141 -3.7580 38 1 5.0213 7.0089 -4.7878 39 1 6.1606 6.4749 -3.5285 40 1 2.4773 8.3513 -2.4250 41 1 2.8708 8.1044 -4.1436 42 1 2.4686 6.7099 -3.1136 43 1 4.6412 9.5593 -2.1031 44 1 6.1732 8.7781 -2.5623 45 1 6.5577 12.2475 -3.7356 46 1 5.1414 2.5784 0.0021 47 1 6.0690 -0.6874 0.0012 48 1 5.9062 0.8456 -0.8883 49 1 5.9061 0.8455 0.8916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809778660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:23 Heat of formation + Delta-G solvation = -102.780304 kcal Electronic energy + Delta-G solvation = -27736.314798 eV Core-core repulsion = 23857.170660 eV Total energy + Delta-G solvation = -3879.144139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93920 -38.80193 -38.67675 -37.45657 -35.80768 -34.21760 -32.24984 -30.63799 -29.76918 -27.80613 -27.46436 -26.85520 -26.26049 -25.60736 -24.08433 -22.49350 -22.13549 -21.36022 -19.09147 -18.11214 -17.76566 -17.31656 -16.73405 -16.29108 -16.19130 -15.48263 -15.41514 -15.13076 -14.77493 -14.65471 -14.49150 -14.12417 -14.02422 -13.60281 -13.02655 -12.82624 -12.64454 -12.55855 -12.37909 -12.06873 -11.94758 -11.76784 -11.68850 -11.51255 -11.42980 -10.96415 -10.87023 -10.79169 -10.71057 -10.68234 -10.44443 -10.21236 -10.06444 -9.63136 -9.01265 -8.89045 -8.77587 -8.29023 -8.08631 -7.83080 -5.93538 -3.93139 0.99519 1.10134 2.98224 3.05115 3.32190 3.34424 3.42185 3.46219 3.99236 4.46242 4.51534 4.58276 4.75671 4.83207 4.86995 4.92361 4.96869 4.98638 5.08816 5.19453 5.30447 5.33758 5.42431 5.46957 5.54161 5.75247 5.80420 5.84473 5.93881 6.05648 6.25725 6.30948 6.36453 6.40287 6.58608 6.73159 6.78069 6.85519 6.89206 7.25681 7.26592 7.28076 7.31680 7.44742 7.51342 7.73471 7.78754 7.90227 8.07348 8.52304 9.12521 9.69507 11.18222 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002409 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.509574 B =11619.769386 C =12094.916185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.109 3.891 4 C -0.198 4.198 5 C 0.113 3.887 6 O -0.490 6.490 7 C -0.092 4.092 8 C 0.106 3.894 9 N -0.680 5.680 10 C 0.070 3.930 11 C -0.057 4.057 12 C -0.116 4.116 13 C -0.128 4.128 14 C 0.033 3.967 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.053 3.947 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.141 4.141 24 C 0.092 3.908 25 O -0.308 6.308 26 C 0.025 3.975 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.387 0.613 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.347 0.653 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.258 0.742 46 H 0.141 0.859 47 H 0.099 0.901 48 H 0.058 0.942 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 -22.446 12.140 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.064 3.936 4 C -0.217 4.217 5 C 0.068 3.932 6 O -0.299 6.299 7 C -0.094 4.094 8 C -0.023 4.023 9 N -0.313 5.313 10 C -0.058 4.058 11 C -0.058 4.058 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.160 4.160 24 C 0.046 3.954 25 O -0.221 6.221 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.158 0.842 31 H 0.242 0.758 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.159 0.841 47 H 0.118 0.882 48 H 0.077 0.923 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.026 -23.059 11.314 26.910 hybrid contribution -0.726 1.519 0.103 1.686 sum -8.751 -21.540 11.417 25.902 Atomic orbital electron populations 1.23072 0.78574 1.03952 1.01329 1.86176 1.21012 1.25712 1.89036 1.17978 0.88966 0.84853 1.01842 1.21224 1.00465 0.91000 1.09051 1.17872 0.88681 0.85200 1.01443 1.84898 1.72464 1.39393 1.33189 1.19928 0.92362 0.95663 1.01409 1.20664 0.99409 0.90565 0.91674 1.60658 1.22654 1.25019 1.22969 1.22118 0.98347 0.87285 0.98093 1.20612 0.95646 0.97619 0.91881 1.21597 0.98973 0.97530 0.99222 1.21759 0.95752 0.98789 1.02265 1.19132 0.95129 0.89117 0.97046 1.21286 1.34524 1.02193 0.96231 0.92237 1.25020 0.95657 0.97307 0.96710 1.69980 1.37670 1.13785 1.32413 0.86609 0.77659 0.79064 0.85117 1.19769 1.21215 1.21188 1.20858 1.00502 0.89892 1.04741 1.18200 0.88167 0.86140 1.02882 1.86170 1.18771 1.28044 1.89165 1.23091 0.78510 1.03856 1.01556 0.92776 0.92562 0.88193 0.84228 0.75772 0.94693 0.90604 0.83283 0.95899 0.91711 0.93914 0.92733 0.94241 0.94127 0.91821 0.94714 0.96921 0.96705 0.93273 0.84117 0.88242 0.92338 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.46 10.28 -34.30 -0.35 -3.81 16 3 C 0.11 1.30 6.70 -39.14 -0.26 1.04 16 4 C -0.20 -2.12 8.97 -39.31 -0.35 -2.47 16 5 C 0.11 1.30 6.55 -39.26 -0.26 1.04 16 6 O -0.49 -5.14 12.25 -19.68 -0.24 -5.38 16 7 C -0.09 -1.10 5.44 -104.45 -0.57 -1.67 16 8 C 0.11 1.34 5.43 -4.98 -0.03 1.31 16 9 N -0.68 -10.43 5.70 -115.06 -0.66 -11.08 16 10 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 11 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 12 C -0.12 -2.32 8.06 37.15 0.30 -2.03 16 13 C -0.13 -2.50 7.89 37.16 0.29 -2.21 16 14 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.50 -13.96 7.65 -34.44 -0.26 -14.22 16 16 H 0.06 1.62 5.68 -52.49 -0.30 1.32 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C -0.14 -1.60 8.65 -39.47 -0.34 -1.94 16 24 C 0.09 1.11 6.70 -39.14 -0.26 0.85 16 25 O -0.31 -3.61 10.28 -34.57 -0.36 -3.96 16 26 C 0.03 0.19 9.81 101.05 0.99 1.18 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.39 2.34 9.06 45.56 0.41 2.75 16 32 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 33 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 34 H 0.35 5.50 6.07 -39.29 -0.24 5.27 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 38 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 42 H 0.03 0.60 6.57 -51.93 -0.34 0.26 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.14 1.37 6.23 -52.49 -0.33 1.04 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 49 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -33.23 389.86 -7.23 -40.46 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.14 Total: 3.25 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.08 Total: -15.83 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.08 Total: -37.40 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.95 Total: -13.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.23 -7.23 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809778660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.315 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds