Wall clock time and date at job start Tue Mar 31 2020 13:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 117.00163 * 2 1 4 4 C 1.38543 * 120.04295 * 0.02562 * 3 2 1 5 5 C 1.38665 * 119.94850 * 179.97438 * 4 3 2 6 6 O 1.35979 * 119.97780 * 179.97438 * 5 4 3 7 7 C 1.38690 * 120.03639 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.95910 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47021 * 285.00365 * 8 7 5 10 10 C 1.46903 * 110.99815 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47425 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47091 * 300.00475 * 11 10 9 13 13 C 1.53004 * 109.46708 * 60.00043 * 11 10 9 14 14 C 1.52994 * 109.47217 * 180.02562 * 11 10 9 15 15 C 1.50707 * 109.47020 * 180.02562 * 14 11 10 16 16 H 1.07996 * 119.99882 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00074 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00326 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46967 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47617 * 119.99725 * 19 17 15 22 22 H 1.48500 * 109.47226 * 240.00261 * 19 17 15 23 23 C 1.38239 * 120.08976 * 359.97438 * 7 5 4 24 24 C 1.38530 * 120.05094 * 0.02562 * 23 7 5 25 25 O 1.36077 * 120.01801 * 179.97438 * 24 23 7 26 26 C 1.42900 * 116.99770 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47064 * 299.99773 * 1 2 3 28 28 H 1.08990 * 109.47154 * 59.99639 * 1 2 3 29 29 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.02353 * 0.24593 * 4 3 2 31 31 H 0.96703 * 113.99814 * 90.00677 * 6 5 4 32 32 H 1.09002 * 109.46292 * 45.00477 * 8 7 5 33 33 H 1.08999 * 109.47067 * 164.99889 * 8 7 5 34 34 H 1.00899 * 111.00136 * 56.04531 * 9 8 7 35 35 H 1.09003 * 109.47072 * 300.00370 * 10 9 8 36 36 H 1.09000 * 109.46772 * 59.99946 * 10 9 8 37 37 H 1.09004 * 109.47459 * 59.99298 * 12 11 10 38 38 H 1.09000 * 109.47182 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.47034 * 299.99822 * 12 11 10 40 40 H 1.09007 * 109.46684 * 60.00415 * 13 11 10 41 41 H 1.09000 * 109.46889 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47446 * 300.00310 * 13 11 10 43 43 H 1.08996 * 109.47127 * 299.99984 * 14 11 10 44 44 H 1.09000 * 109.47058 * 60.00085 * 14 11 10 45 45 H 0.96999 * 120.00099 * 179.97438 * 18 17 15 46 46 H 1.08000 * 119.97475 * 179.97438 * 23 7 5 47 47 H 1.09002 * 109.46980 * 180.02562 * 26 25 24 48 48 H 1.08997 * 109.47276 * 300.00518 * 26 25 24 49 49 H 1.08998 * 109.46877 * 60.00330 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3742 0.0005 5 6 1.9243 3.6086 0.0011 6 8 1.1852 4.7500 0.0011 7 6 3.3094 3.6798 0.0016 8 6 3.9940 5.0223 0.0016 9 7 3.8976 5.6211 -1.3363 10 6 4.5552 6.9342 -1.3740 11 6 4.4348 7.5248 -2.7803 12 6 5.1075 6.5884 -3.7859 13 6 2.9566 7.6841 -3.1416 14 6 5.1202 8.8921 -2.8196 15 6 5.0010 9.4740 -4.2047 16 1 4.4881 8.9235 -4.9794 17 6 5.5477 10.7088 -4.4830 18 7 6.1728 11.3790 -3.5397 19 14 5.4007 11.4298 -6.1999 20 1 4.6575 10.4848 -7.0717 21 1 4.6706 12.7213 -6.1336 22 1 6.7574 11.6562 -6.7595 23 6 4.0629 2.5208 0.0021 24 6 3.4358 1.2856 0.0016 25 8 4.1782 0.1452 0.0016 26 6 5.5992 0.2962 0.0016 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2142 2.3189 0.0050 31 1 0.9712 5.0800 0.8845 32 1 3.5114 5.6761 0.7281 33 1 5.0433 4.8951 0.2680 34 1 2.9357 5.6901 -1.6331 35 1 4.0761 7.6012 -0.6571 36 1 5.6083 6.8206 -1.1169 37 1 4.6196 5.6141 -3.7580 38 1 5.0213 7.0089 -4.7878 39 1 6.1606 6.4749 -3.5285 40 1 2.4773 8.3513 -2.4250 41 1 2.8708 8.1044 -4.1436 42 1 2.4686 6.7099 -3.1136 43 1 4.6412 9.5593 -2.1031 44 1 6.1732 8.7781 -2.5623 45 1 6.5577 12.2475 -3.7356 46 1 5.1414 2.5784 0.0021 47 1 6.0690 -0.6874 0.0012 48 1 5.9062 0.8456 -0.8883 49 1 5.9061 0.8455 0.8916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809778660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:22 Heat of formation + Delta-G solvation = -125.704202 kcal Electronic energy + Delta-G solvation = -27737.308853 eV Core-core repulsion = 23857.170660 eV Total energy + Delta-G solvation = -3880.138193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73517 -39.69466 -39.42845 -38.91347 -36.69283 -35.58444 -34.19011 -31.66791 -30.52496 -29.11975 -28.36981 -28.05590 -27.88721 -26.84110 -25.51912 -23.87557 -23.19673 -22.27823 -19.89159 -19.52828 -18.75195 -18.32549 -18.13206 -17.52467 -17.04158 -16.70552 -16.49169 -16.14278 -15.93718 -15.65513 -15.47878 -15.41228 -14.98227 -14.90452 -14.54887 -14.28320 -13.89395 -13.61251 -13.43949 -13.31660 -13.20482 -13.03510 -12.78920 -12.66903 -12.45581 -12.38805 -12.27026 -12.24019 -12.13271 -12.06799 -11.85578 -11.63034 -11.50452 -11.36209 -10.84888 -10.72189 -10.49840 -9.73141 -9.26828 -8.70367 -8.13132 -6.19593 0.18441 0.25252 1.40275 1.41454 1.53633 2.30492 2.35069 2.44176 2.49515 3.20753 3.23288 3.46400 3.74455 3.85394 4.11144 4.15812 4.16306 4.24699 4.34654 4.39751 4.40409 4.40819 4.42936 4.54864 4.64718 4.67654 4.73543 4.77375 4.80156 4.83702 4.97090 4.99267 5.08771 5.09467 5.21918 5.22751 5.43653 5.52727 5.54182 5.55149 5.59011 5.67140 5.88438 5.94142 6.07205 6.11612 6.39007 6.53400 6.54405 6.84669 6.95410 7.47448 8.99332 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002409 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.509574 B =11619.769386 C =12094.916185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.100 3.900 4 C -0.198 4.198 5 C 0.114 3.886 6 O -0.500 6.500 7 C -0.106 4.106 8 C 0.108 3.892 9 N -0.679 5.679 10 C 0.083 3.917 11 C -0.054 4.054 12 C -0.106 4.106 13 C -0.120 4.120 14 C 0.040 3.960 15 C -0.512 4.512 16 H 0.064 0.936 17 C -0.005 4.005 18 N -0.937 5.937 19 Si 0.955 3.045 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.140 4.140 24 C 0.074 3.926 25 O -0.328 6.328 26 C 0.018 3.982 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.159 0.841 31 H 0.406 0.594 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.345 0.655 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.060 0.940 43 H -0.014 1.014 44 H -0.013 1.013 45 H 0.259 0.741 46 H 0.153 0.847 47 H 0.118 0.882 48 H 0.059 0.941 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -23.696 11.879 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.054 3.946 4 C -0.217 4.217 5 C 0.068 3.932 6 O -0.312 6.312 7 C -0.107 4.107 8 C -0.020 4.020 9 N -0.312 5.312 10 C -0.046 4.046 11 C -0.054 4.054 12 C -0.164 4.164 13 C -0.177 4.177 14 C 0.003 3.997 15 C -0.550 4.550 16 H 0.082 0.918 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.781 3.219 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.159 4.159 24 C 0.029 3.971 25 O -0.242 6.242 26 C -0.077 4.077 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.177 0.823 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.004 0.996 44 H 0.005 0.995 45 H 0.068 0.932 46 H 0.170 0.830 47 H 0.137 0.863 48 H 0.078 0.922 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.188 -24.324 11.067 28.258 hybrid contribution -0.400 1.842 0.249 1.901 sum -9.588 -22.482 11.316 26.934 Atomic orbital electron populations 1.23360 0.76505 1.05622 1.02223 1.86149 1.23261 1.25729 1.88960 1.18232 0.89279 0.85443 1.01644 1.21382 1.01404 0.90366 1.08569 1.17952 0.88618 0.85686 1.00895 1.84841 1.72268 1.39103 1.35029 1.19892 0.92741 0.95243 1.02867 1.20671 1.00098 0.90962 0.90269 1.60598 1.22318 1.23193 1.25071 1.21827 0.98459 0.88456 0.95882 1.20478 0.95835 0.95020 0.94102 1.21492 0.98809 0.98128 0.97932 1.21655 0.95020 1.00033 1.01014 1.19009 0.93662 0.91625 0.95453 1.21640 1.33880 1.02318 0.97169 0.91800 1.25904 0.95463 0.97968 1.00787 1.70112 1.38837 1.14279 1.34642 0.85536 0.77762 0.78330 0.80277 1.18634 1.20766 1.20814 1.20980 1.01143 0.89581 1.04215 1.18425 0.88681 0.86484 1.03524 1.86140 1.20518 1.28301 1.89263 1.23332 0.76827 1.05359 1.02134 0.91409 0.92037 0.86285 0.82348 0.73557 0.93788 0.90055 0.83446 0.96219 0.92135 0.91934 0.94371 0.94809 0.94348 0.93553 0.92152 0.99607 0.99513 0.93178 0.82975 0.86330 0.92242 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.05 10.28 -79.51 -0.82 -7.87 16 3 C 0.10 2.26 6.70 22.56 0.15 2.41 16 4 C -0.20 -3.89 8.97 22.44 0.20 -3.68 16 5 C 0.11 2.39 6.55 22.48 0.15 2.54 16 6 O -0.50 -9.39 12.25 -93.32 -1.14 -10.53 16 7 C -0.11 -2.37 5.44 -19.75 -0.11 -2.47 16 8 C 0.11 2.55 5.43 85.56 0.46 3.01 16 9 N -0.68 -19.64 5.70 -517.92 -2.95 -22.60 16 10 C 0.08 2.86 4.65 86.30 0.40 3.26 16 11 C -0.05 -2.19 0.60 -52.18 -0.03 -2.22 16 12 C -0.11 -4.18 8.06 71.98 0.58 -3.60 16 13 C -0.12 -4.55 7.89 71.98 0.57 -3.98 16 14 C 0.04 2.10 4.04 29.85 0.12 2.22 16 15 C -0.51 -28.65 7.65 25.60 0.20 -28.45 16 16 H 0.06 3.46 5.68 -2.91 -0.02 3.45 16 17 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 18 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 19 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.14 -3.01 8.65 22.34 0.19 -2.82 16 24 C 0.07 1.74 6.70 22.55 0.15 1.89 16 25 O -0.33 -7.46 10.28 -80.48 -0.83 -8.28 16 26 C 0.02 0.25 9.81 113.37 1.11 1.37 16 27 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 28 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 29 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.16 2.35 6.30 -2.91 -0.02 2.33 16 31 H 0.41 3.99 9.06 -74.06 -0.67 3.32 16 32 H 0.04 0.97 8.00 -2.39 -0.02 0.95 16 33 H 0.08 1.82 7.95 -2.39 -0.02 1.80 16 34 H 0.35 10.20 6.07 -89.69 -0.54 9.65 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.20 7.60 -2.38 -0.02 2.18 16 38 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 42 H 0.06 1.97 6.57 -2.39 -0.02 1.96 16 43 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 46 H 0.15 2.75 6.23 -2.91 -0.02 2.73 16 47 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 49 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 Total: -1.00 -71.51 389.86 2.04 -69.46 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.25 Total: 19.11 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 5.72 Total: -29.02 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.67 Total: -79.81 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -2.79 Total: -26.68 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.51 2.04 -69.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809778660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.241 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds