Wall clock time and date at job start Tue Mar 31 2020 15:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00094 * 2 1 3 5 5 C 1.52997 * 109.46931 * 174.99638 * 4 2 1 6 6 C 1.50707 * 109.46750 * 175.32011 * 5 4 2 7 7 H 1.07990 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99511 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00062 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99576 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47180 * 60.00031 * 10 8 6 12 12 H 1.48504 * 109.46783 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46932 * 299.99985 * 10 8 6 14 14 N 1.46901 * 109.46907 * 120.00290 * 2 1 3 15 15 C 1.47626 * 111.00247 * 287.35571 * 14 2 1 16 16 C 1.50812 * 108.03949 * 209.67439 * 15 14 2 17 17 C 1.53817 * 111.61936 * 264.93571 * 16 15 14 18 18 C 1.54177 * 111.97067 * 40.96269 * 17 16 15 19 19 O 1.42901 * 108.85286 * 280.70923 * 18 17 16 20 20 C 1.53002 * 108.77382 * 162.26753 * 18 17 16 21 21 F 1.39903 * 109.46645 * 296.96569 * 20 18 17 22 22 F 1.39903 * 109.47129 * 56.96196 * 20 18 17 23 23 F 1.39896 * 109.47076 * 176.96520 * 20 18 17 24 24 C 1.50748 * 112.61074 * 41.51376 * 18 17 16 25 25 H 1.08996 * 109.62187 * 26.90047 * 24 18 17 26 26 C 1.53000 * 109.54399 * 147.12651 * 24 18 17 27 27 C 1.39779 * 110.99838 * 56.26091 * 14 2 1 28 28 H 1.09005 * 109.47010 * 63.73503 * 1 2 3 29 29 H 1.09008 * 109.47432 * 183.72844 * 1 2 3 30 30 H 1.08998 * 109.47722 * 303.72947 * 1 2 3 31 31 H 1.08994 * 109.47209 * 295.00440 * 4 2 1 32 32 H 1.08999 * 109.47017 * 55.00109 * 4 2 1 33 33 H 1.08996 * 109.47812 * 295.32402 * 5 4 2 34 34 H 1.09000 * 109.46820 * 55.32883 * 5 4 2 35 35 H 0.96997 * 120.00183 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.74751 * 90.03467 * 15 14 2 37 37 H 1.09008 * 109.74547 * 329.31042 * 15 14 2 38 38 H 1.09000 * 109.05083 * 25.48848 * 16 15 14 39 39 H 1.08997 * 109.05333 * 144.38974 * 16 15 14 40 40 H 1.08997 * 108.98005 * 161.60017 * 17 16 15 41 41 H 1.08992 * 108.98287 * 280.32099 * 17 16 15 42 42 H 0.96706 * 114.00195 * 303.08893 * 19 18 17 43 43 H 1.09004 * 109.47000 * 179.54874 * 26 24 18 44 44 H 1.09000 * 109.46944 * 299.54455 * 26 24 18 45 45 H 1.09002 * 109.47298 * 59.54854 * 26 24 18 46 46 H 1.08997 * 109.02534 * 291.44619 * 27 14 2 47 47 H 1.08999 * 109.02454 * 50.27559 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0766 -1.4195 -2.4796 7 1 3.3837 -1.9549 -3.1115 8 6 5.4297 -1.4734 -2.7393 9 7 6.2736 -0.8217 -1.9695 10 14 6.0641 -2.4722 -4.1848 11 1 5.4776 -1.9478 -5.4443 12 1 7.5442 -2.3684 -4.2465 13 1 5.6749 -3.8948 -4.0122 14 7 2.0196 -0.6926 1.1994 15 6 1.8084 0.1286 2.4079 16 6 2.8937 -0.2105 3.3986 17 6 2.4297 -1.2782 4.4040 18 6 1.6024 -2.3884 3.7258 19 8 0.2700 -1.9132 3.5234 20 6 1.5573 -3.6048 4.6527 21 9 2.8526 -4.1020 4.8329 22 9 1.0260 -3.2282 5.8909 23 9 0.7523 -4.5965 4.0819 24 6 2.1766 -2.8094 2.3970 25 1 3.2510 -2.6262 2.3880 26 6 1.9095 -4.2991 2.1730 27 6 1.5032 -1.9893 1.2750 28 1 -0.3633 0.4548 -0.9216 29 1 -0.3634 -1.0255 0.0668 30 1 -0.3634 0.5706 0.8546 31 1 1.7516 -1.7714 -1.2057 32 1 1.6054 -0.2617 -2.1370 33 1 3.8501 0.4311 -1.4410 34 1 3.9956 -0.9975 -0.3892 35 1 7.2254 -0.8599 -2.1519 36 1 0.8327 -0.0952 2.8393 37 1 1.8634 1.1861 2.1488 38 1 3.7639 -0.5842 2.8590 39 1 3.1740 0.6918 3.9420 40 1 3.3049 -1.7257 4.8749 41 1 1.8208 -0.8012 5.1719 42 1 -0.1710 -1.6219 4.3332 43 1 2.3181 -4.6004 1.2084 44 1 2.3853 -4.8768 2.9655 45 1 0.8349 -4.4815 2.1853 46 1 0.4321 -1.9344 1.4690 47 1 1.6648 -2.4922 0.3215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:59 Heat of formation + Delta-G solvation = -187.549798 kcal Electronic energy + Delta-G solvation = -30963.550484 eV Core-core repulsion = 26538.873724 eV Total energy + Delta-G solvation = -4424.676760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.45019 -47.90879 -47.74469 -40.37596 -37.55332 -34.45811 -33.54011 -33.00859 -31.28422 -29.17661 -28.12360 -26.74897 -25.22270 -24.24848 -23.54495 -21.53503 -20.59007 -20.13900 -19.14912 -18.72085 -18.52754 -18.29830 -16.30485 -16.06827 -15.67828 -15.52797 -14.92523 -14.90027 -14.63502 -14.39901 -14.24589 -14.20618 -14.05158 -13.90169 -13.67202 -13.31786 -13.18494 -12.83445 -12.61534 -12.50706 -12.17195 -12.11233 -11.87319 -11.81038 -11.54205 -11.19619 -10.95457 -10.88953 -10.82795 -10.59719 -10.52257 -10.42820 -10.39876 -10.01875 -9.93009 -9.54346 -9.14673 -8.87095 -8.21436 -7.51086 -5.87474 -3.88422 2.52032 3.39070 3.43483 3.45965 3.47943 3.54087 3.82525 4.12389 4.26746 4.50547 4.54967 4.59760 5.00644 5.09076 5.17684 5.30279 5.40636 5.48120 5.52788 5.55241 5.64892 5.72584 5.79335 5.83645 5.86539 5.94945 5.96660 6.13260 6.16974 6.32105 6.32962 6.39437 6.41888 6.52601 6.58348 6.72441 6.95816 7.08259 7.32238 7.70146 7.86236 7.96427 8.09023 8.23832 8.58674 9.20294 9.74129 11.23434 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.004034 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.365328 B = 6938.991319 C = 7625.022898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.075 0.925 4 C -0.106 4.106 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.535 5.535 15 C 0.055 3.945 16 C -0.113 4.113 17 C -0.143 4.143 18 C 0.115 3.885 19 O -0.521 6.521 20 C 0.420 3.580 21 F -0.177 7.177 22 F -0.191 7.191 23 F -0.171 7.171 24 C -0.081 4.081 25 H 0.105 0.895 26 C -0.171 4.171 27 C 0.086 3.914 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.008 0.992 34 H 0.033 0.967 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.374 0.626 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 -1.365 16.302 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.018 4.018 3 H 0.093 0.907 4 C -0.144 4.144 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.258 5.258 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.181 4.181 18 C 0.072 3.928 19 O -0.327 6.327 20 C 0.366 3.634 21 F -0.158 7.158 22 F -0.172 7.172 23 F -0.153 7.153 24 C -0.100 4.100 25 H 0.123 0.877 26 C -0.229 4.229 27 C -0.043 4.043 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.223 0.777 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.373 -1.566 15.702 19.452 hybrid contribution -0.469 -0.662 0.167 0.828 sum -11.842 -2.228 15.869 19.926 Atomic orbital electron populations 1.22480 0.98821 1.01661 1.01080 1.21805 0.91036 0.98240 0.90693 0.90665 1.21788 1.00797 0.98411 0.93372 1.18996 0.88083 0.96430 0.97195 1.21304 0.91775 1.29800 1.12803 0.93247 1.24971 0.97162 0.95789 0.96324 1.69957 1.02345 1.42658 1.38442 0.86779 0.77631 0.80843 0.83418 1.20443 1.21423 1.20403 1.58851 1.62491 1.02081 1.02404 1.21922 0.97873 0.96895 0.90538 1.21365 1.00538 0.97081 0.96106 1.22631 1.00359 0.96233 0.98878 1.22407 0.85909 0.88834 0.95622 1.86867 1.25888 1.83629 1.36294 1.21892 0.73858 0.87338 0.80354 1.93161 1.38140 1.89019 1.95480 1.93147 1.86621 1.91261 1.46207 1.93189 1.74112 1.64413 1.83539 1.21197 1.02028 0.96137 0.90639 0.87715 1.22638 1.03029 0.94020 1.03170 1.20777 0.96625 0.89324 0.97621 0.92637 0.92546 0.93619 0.93207 0.93489 0.97396 0.94853 0.93218 0.92386 0.91496 0.89471 0.91472 0.90241 0.90814 0.77659 0.91420 0.92183 0.90809 0.93989 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.61 37.16 0.32 -2.20 16 2 C 0.09 1.48 2.25 -67.71 -0.15 1.33 16 3 H 0.08 1.28 7.73 -51.93 -0.40 0.88 16 4 C -0.11 -2.14 4.48 -26.73 -0.12 -2.26 16 5 C 0.03 0.77 4.92 -27.88 -0.14 0.63 16 6 C -0.52 -14.73 9.11 -34.43 -0.31 -15.04 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.54 -8.33 3.27 -231.99 -0.76 -9.09 16 15 C 0.05 0.69 4.66 -4.52 -0.02 0.67 16 16 C -0.11 -1.32 5.41 -27.40 -0.15 -1.46 16 17 C -0.14 -1.43 4.65 -25.69 -0.12 -1.55 16 18 C 0.12 1.27 0.39 -91.13 -0.04 1.24 16 19 O -0.52 -5.29 8.29 -35.23 -0.29 -5.58 16 20 C 0.42 4.77 2.01 37.16 0.07 4.85 16 21 F -0.18 -2.17 14.88 2.25 0.03 -2.14 16 22 F -0.19 -2.01 16.59 2.25 0.04 -1.98 16 23 F -0.17 -2.10 12.93 2.25 0.03 -2.07 16 24 C -0.08 -1.10 2.05 -90.99 -0.19 -1.29 16 25 H 0.10 1.58 7.12 -51.93 -0.37 1.21 16 26 C -0.17 -2.26 7.44 37.16 0.28 -1.98 16 27 C 0.09 1.29 3.47 -6.74 -0.02 1.26 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.79 6.35 -51.92 -0.33 0.46 16 30 H 0.04 0.58 7.72 -51.93 -0.40 0.18 16 31 H 0.05 1.01 6.06 -51.93 -0.31 0.69 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.03 0.91 7.63 -51.93 -0.40 0.51 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 0.68 5.39 -51.93 -0.28 0.40 16 37 H 0.07 0.85 7.56 -51.92 -0.39 0.45 16 38 H 0.09 1.25 7.27 -51.93 -0.38 0.87 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.79 7.41 -51.93 -0.39 0.41 16 41 H 0.07 0.59 8.00 -51.93 -0.42 0.18 16 42 H 0.37 2.50 8.58 45.56 0.39 2.89 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.77 5.17 -51.93 -0.27 0.50 16 45 H 0.07 0.95 6.60 -51.93 -0.34 0.61 16 46 H 0.04 0.62 4.74 -51.93 -0.25 0.37 16 47 H 0.09 1.47 5.57 -51.93 -0.29 1.18 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -30.31 350.66 -7.11 -37.42 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.47 Total: 1.79 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.68 Total: -14.22 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.02 Total: -35.40 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.29 Total: -5.58 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.10 Total: -6.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.31 -7.11 -37.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.131 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds