Wall clock time and date at job start Tue Mar 31 2020 15:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00094 * 2 1 3 5 5 C 1.52997 * 109.46931 * 174.99638 * 4 2 1 6 6 C 1.50707 * 109.46750 * 175.32011 * 5 4 2 7 7 H 1.07990 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99511 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00062 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99576 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47180 * 60.00031 * 10 8 6 12 12 H 1.48504 * 109.46783 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46932 * 299.99985 * 10 8 6 14 14 N 1.46901 * 109.46907 * 120.00290 * 2 1 3 15 15 C 1.47626 * 111.00247 * 287.35571 * 14 2 1 16 16 C 1.50812 * 108.03949 * 209.67439 * 15 14 2 17 17 C 1.53817 * 111.61936 * 264.93571 * 16 15 14 18 18 C 1.54177 * 111.97067 * 40.96269 * 17 16 15 19 19 O 1.42901 * 108.85286 * 280.70923 * 18 17 16 20 20 C 1.53002 * 108.77382 * 162.26753 * 18 17 16 21 21 F 1.39903 * 109.46645 * 296.96569 * 20 18 17 22 22 F 1.39903 * 109.47129 * 56.96196 * 20 18 17 23 23 F 1.39896 * 109.47076 * 176.96520 * 20 18 17 24 24 C 1.50748 * 112.61074 * 41.51376 * 18 17 16 25 25 H 1.08996 * 109.62187 * 26.90047 * 24 18 17 26 26 C 1.53000 * 109.54399 * 147.12651 * 24 18 17 27 27 C 1.39779 * 110.99838 * 56.26091 * 14 2 1 28 28 H 1.09005 * 109.47010 * 63.73503 * 1 2 3 29 29 H 1.09008 * 109.47432 * 183.72844 * 1 2 3 30 30 H 1.08998 * 109.47722 * 303.72947 * 1 2 3 31 31 H 1.08994 * 109.47209 * 295.00440 * 4 2 1 32 32 H 1.08999 * 109.47017 * 55.00109 * 4 2 1 33 33 H 1.08996 * 109.47812 * 295.32402 * 5 4 2 34 34 H 1.09000 * 109.46820 * 55.32883 * 5 4 2 35 35 H 0.96997 * 120.00183 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.74751 * 90.03467 * 15 14 2 37 37 H 1.09008 * 109.74547 * 329.31042 * 15 14 2 38 38 H 1.09000 * 109.05083 * 25.48848 * 16 15 14 39 39 H 1.08997 * 109.05333 * 144.38974 * 16 15 14 40 40 H 1.08997 * 108.98005 * 161.60017 * 17 16 15 41 41 H 1.08992 * 108.98287 * 280.32099 * 17 16 15 42 42 H 0.96706 * 114.00195 * 303.08893 * 19 18 17 43 43 H 1.09004 * 109.47000 * 179.54874 * 26 24 18 44 44 H 1.09000 * 109.46944 * 299.54455 * 26 24 18 45 45 H 1.09002 * 109.47298 * 59.54854 * 26 24 18 46 46 H 1.08997 * 109.02534 * 291.44619 * 27 14 2 47 47 H 1.08999 * 109.02454 * 50.27559 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0766 -1.4195 -2.4796 7 1 3.3837 -1.9549 -3.1115 8 6 5.4297 -1.4734 -2.7393 9 7 6.2736 -0.8217 -1.9695 10 14 6.0641 -2.4722 -4.1848 11 1 5.4776 -1.9478 -5.4443 12 1 7.5442 -2.3684 -4.2465 13 1 5.6749 -3.8948 -4.0122 14 7 2.0196 -0.6926 1.1994 15 6 1.8084 0.1286 2.4079 16 6 2.8937 -0.2105 3.3986 17 6 2.4297 -1.2782 4.4040 18 6 1.6024 -2.3884 3.7258 19 8 0.2700 -1.9132 3.5234 20 6 1.5573 -3.6048 4.6527 21 9 2.8526 -4.1020 4.8329 22 9 1.0260 -3.2282 5.8909 23 9 0.7523 -4.5965 4.0819 24 6 2.1766 -2.8094 2.3970 25 1 3.2510 -2.6262 2.3880 26 6 1.9095 -4.2991 2.1730 27 6 1.5032 -1.9893 1.2750 28 1 -0.3633 0.4548 -0.9216 29 1 -0.3634 -1.0255 0.0668 30 1 -0.3634 0.5706 0.8546 31 1 1.7516 -1.7714 -1.2057 32 1 1.6054 -0.2617 -2.1370 33 1 3.8501 0.4311 -1.4410 34 1 3.9956 -0.9975 -0.3892 35 1 7.2254 -0.8599 -2.1519 36 1 0.8327 -0.0952 2.8393 37 1 1.8634 1.1861 2.1488 38 1 3.7639 -0.5842 2.8590 39 1 3.1740 0.6918 3.9420 40 1 3.3049 -1.7257 4.8749 41 1 1.8208 -0.8012 5.1719 42 1 -0.1710 -1.6219 4.3332 43 1 2.3181 -4.6004 1.2084 44 1 2.3853 -4.8768 2.9655 45 1 0.8349 -4.4815 2.1853 46 1 0.4321 -1.9344 1.4690 47 1 1.6648 -2.4922 0.3215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:58 Heat of formation + Delta-G solvation = -206.174879 kcal Electronic energy + Delta-G solvation = -30964.358128 eV Core-core repulsion = 26538.873724 eV Total energy + Delta-G solvation = -4425.484404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.36350 -48.79287 -48.68171 -41.43555 -38.67968 -35.76272 -34.88997 -34.48042 -32.80942 -30.74121 -29.16712 -27.79192 -27.01769 -25.46025 -24.53267 -23.19592 -21.96641 -21.09900 -20.39591 -19.62543 -19.53009 -19.20528 -18.34272 -17.19983 -16.97664 -16.57323 -16.42493 -15.90584 -15.85889 -15.58870 -15.22103 -15.12891 -15.03143 -14.91372 -14.68600 -14.59717 -14.49806 -14.16990 -14.02372 -13.62881 -13.53984 -13.25918 -13.14135 -13.07914 -12.89636 -12.79810 -12.75835 -12.35058 -11.97944 -11.95211 -11.86968 -11.58431 -11.50222 -11.45211 -11.32553 -11.08142 -10.90903 -10.83520 -10.44651 -8.69613 -8.10937 -6.20475 1.40488 1.43103 1.50660 1.61399 2.45128 2.60952 2.67273 2.91546 3.10480 3.21541 3.24227 3.58171 3.68127 3.98359 4.10517 4.11950 4.21358 4.31733 4.42225 4.45040 4.56978 4.58800 4.62971 4.79639 4.81508 4.85292 4.90075 4.93938 5.04940 5.08197 5.13493 5.16505 5.21931 5.25643 5.34797 5.44470 5.47853 5.57978 5.63916 5.93764 6.07703 6.38001 6.43829 6.54754 6.79407 6.99167 7.47079 8.99884 Molecular weight = 323.18amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.004034 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.365328 B = 6938.991319 C = 7625.022898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 H 0.068 0.932 4 C -0.095 4.095 5 C 0.042 3.958 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.955 3.045 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.270 1.270 14 N -0.557 5.557 15 C 0.057 3.943 16 C -0.110 4.110 17 C -0.138 4.138 18 C 0.125 3.875 19 O -0.526 6.526 20 C 0.423 3.577 21 F -0.184 7.184 22 F -0.182 7.182 23 F -0.177 7.177 24 C -0.081 4.081 25 H 0.082 0.918 26 C -0.166 4.166 27 C 0.095 3.905 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.047 0.953 33 H -0.022 1.022 34 H 0.008 0.992 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.394 0.606 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 -1.407 17.248 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 H 0.086 0.914 4 C -0.133 4.133 5 C 0.005 3.995 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.195 1.195 14 N -0.280 5.280 15 C -0.069 4.069 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.082 3.918 19 O -0.335 6.335 20 C 0.368 3.632 21 F -0.166 7.166 22 F -0.163 7.163 23 F -0.158 7.158 24 C -0.100 4.100 25 H 0.100 0.900 26 C -0.223 4.223 27 C -0.034 4.034 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H -0.004 1.004 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.246 0.754 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.984 -1.604 16.664 21.186 hybrid contribution 0.043 -0.628 -0.107 0.639 sum -12.940 -2.232 16.557 21.132 Atomic orbital electron populations 1.22322 0.96084 1.02022 1.02296 1.21612 0.93063 0.97107 0.89494 0.91405 1.21604 0.96924 0.99012 0.95770 1.18793 0.91761 0.93813 0.95174 1.21758 0.92364 1.30144 1.13643 0.92994 1.25862 0.97454 0.96879 0.99238 1.70097 1.02659 1.44040 1.40275 0.85665 0.77058 0.79383 0.79906 1.19353 1.20913 1.19495 1.58774 1.63346 1.02665 1.03236 1.21997 0.99124 0.96386 0.89427 1.21308 0.98924 0.98364 0.96199 1.22622 1.00762 0.95408 0.98804 1.22121 0.86602 0.89122 0.93958 1.86804 1.25245 1.83545 1.37882 1.21875 0.73503 0.87123 0.80660 1.93151 1.38737 1.89138 1.95530 1.93164 1.86430 1.91124 1.45601 1.93176 1.74205 1.64720 1.83702 1.21071 1.00798 0.96144 0.92010 0.89993 1.22605 1.03307 0.93938 1.02498 1.20621 0.97201 0.88968 0.96644 0.92069 0.92628 0.91634 0.93400 0.93381 1.00392 0.97390 0.93097 0.90489 0.91425 0.92920 0.89534 0.90272 0.87686 0.75398 0.92862 0.91806 0.90152 0.93021 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 8.61 71.98 0.62 -3.74 16 2 C 0.09 3.14 2.25 44.92 0.10 3.24 16 3 H 0.07 2.33 7.73 -2.39 -0.02 2.31 16 4 C -0.10 -3.96 4.48 30.59 0.14 -3.82 16 5 C 0.04 2.24 4.92 29.85 0.15 2.38 16 6 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 7 H 0.05 2.93 7.74 -2.92 -0.02 2.91 16 8 C 0.00 0.19 5.46 84.66 0.46 0.65 16 9 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 10 Si 0.95 45.38 29.54 68.60 2.03 47.40 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 14 N -0.56 -17.42 3.27 -887.87 -2.90 -20.32 16 15 C 0.06 1.36 4.66 85.45 0.40 1.76 16 16 C -0.11 -2.45 5.41 30.16 0.16 -2.28 16 17 C -0.14 -2.46 4.65 31.27 0.15 -2.31 16 18 C 0.13 2.55 0.39 -11.13 0.00 2.55 16 19 O -0.53 -9.11 8.29 -148.98 -1.24 -10.34 16 20 C 0.42 8.83 2.01 71.98 0.14 8.98 16 21 F -0.18 -4.34 14.88 44.97 0.67 -3.67 16 22 F -0.18 -3.32 16.59 44.97 0.75 -2.58 16 23 F -0.18 -4.04 12.93 44.97 0.58 -3.46 16 24 C -0.08 -2.21 2.05 -11.04 -0.02 -2.23 16 25 H 0.08 2.60 7.12 -2.39 -0.02 2.59 16 26 C -0.17 -4.41 7.44 71.98 0.54 -3.88 16 27 C 0.09 2.85 3.47 88.07 0.31 3.16 16 28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.05 1.46 6.35 -2.38 -0.02 1.44 16 30 H 0.06 1.46 7.72 -2.39 -0.02 1.44 16 31 H 0.05 2.00 6.06 -2.39 -0.01 1.98 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 34 H 0.01 0.45 7.63 -2.39 -0.02 0.43 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.08 1.57 5.39 -2.39 -0.01 1.55 16 37 H 0.07 1.61 7.56 -2.38 -0.02 1.59 16 38 H 0.05 1.55 7.27 -2.39 -0.02 1.54 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.45 7.41 -2.39 -0.02 1.43 16 41 H 0.10 1.25 8.00 -2.39 -0.02 1.24 16 42 H 0.39 3.63 8.58 -74.05 -0.64 2.99 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.63 5.17 -2.39 -0.01 1.61 16 45 H 0.08 2.02 6.60 -2.39 -0.02 2.00 16 46 H 0.05 1.45 4.74 -2.39 -0.01 1.44 16 47 H 0.05 1.95 5.57 -2.39 -0.01 1.93 16 Total: -1.00 -66.82 350.66 3.89 -62.94 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.36 Total: 14.40 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.36 Total: -26.88 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.62 Total: -77.81 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.24 Total: -10.34 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.00 Total: -9.71 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.82 3.89 -62.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.239 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds