Wall clock time and date at job start Tue Mar 31 2020 13:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33881 * 124.18916 * 2 1 4 4 O 1.21537 * 123.79062 * 0.04002 * 3 2 1 5 5 N 1.34697 * 112.41523 * 180.02562 * 3 2 1 6 6 C 1.46801 * 106.38742 * 359.97438 * 5 3 2 7 7 C 1.52545 * 110.55410 * 118.67702 * 6 5 3 8 8 C 1.53149 * 109.31913 * 66.38223 * 7 6 5 9 9 N 1.46856 * 109.45840 * 58.28962 * 8 7 6 10 10 C 1.46900 * 110.99711 * 173.66799 * 9 8 7 11 11 C 1.52995 * 109.47154 * 83.68366 * 10 9 8 12 12 C 1.52998 * 109.47075 * 309.28808 * 11 10 9 13 13 C 1.53002 * 109.46973 * 69.28763 * 11 10 9 14 14 C 1.52998 * 109.47446 * 189.28855 * 11 10 9 15 15 C 1.50697 * 109.47323 * 180.02562 * 14 11 10 16 16 H 1.07999 * 120.00176 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99872 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99914 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99836 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47064 * 60.00019 * 19 17 15 21 21 H 1.48501 * 109.47130 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47315 * 300.00533 * 19 17 15 23 23 C 1.46855 * 111.28600 * 297.82708 * 9 8 7 24 24 C 1.52547 * 110.56222 * 241.32582 * 6 5 3 25 25 C 1.34926 * 124.19394 * 180.02562 * 2 1 3 26 26 O 1.21228 * 127.27188 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47383 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47346 * 119.97522 * 1 2 3 29 29 H 1.09000 * 109.47323 * 239.97331 * 1 2 3 30 30 H 0.96999 * 126.80543 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.50361 * 306.43291 * 7 6 5 32 32 H 1.09002 * 109.51956 * 186.35015 * 7 6 5 33 33 H 1.08995 * 109.47361 * 298.29389 * 8 7 6 34 34 H 1.09005 * 109.47463 * 178.28124 * 8 7 6 35 35 H 1.09003 * 109.47331 * 203.68407 * 10 9 8 36 36 H 1.08994 * 109.47357 * 323.67907 * 10 9 8 37 37 H 1.09002 * 109.47098 * 66.12792 * 12 11 10 38 38 H 1.09005 * 109.47063 * 186.12566 * 12 11 10 39 39 H 1.08997 * 109.46928 * 306.12741 * 12 11 10 40 40 H 1.08999 * 109.47327 * 25.22838 * 13 11 10 41 41 H 1.09004 * 109.46941 * 145.22948 * 13 11 10 42 42 H 1.09006 * 109.47175 * 265.22404 * 13 11 10 43 43 H 1.09006 * 109.46997 * 299.99722 * 14 11 10 44 44 H 1.08995 * 109.47359 * 59.99499 * 14 11 10 45 45 H 0.97001 * 119.99613 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.47453 * 182.17333 * 23 9 8 47 47 H 1.08997 * 109.46996 * 302.18118 * 23 9 8 48 48 H 1.08997 * 109.49480 * 53.57779 * 24 6 5 49 49 H 1.08997 * 109.49639 * 173.64089 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1074 0.0000 4 8 1.7616 2.2342 0.0007 5 7 3.5359 0.8326 -0.0006 6 6 3.6540 -0.6307 -0.0003 7 6 4.3797 -1.1096 -1.2537 8 6 5.8326 -0.6269 -1.2136 9 7 6.4848 -1.1387 -0.0015 10 6 7.9194 -0.8224 -0.0021 11 6 8.1287 0.5979 0.5268 12 6 7.2080 1.5624 -0.2234 13 6 7.8018 0.6390 2.0209 14 6 9.5856 1.0127 0.3119 15 6 9.7919 2.4114 0.8334 16 1 8.9664 2.9508 1.2737 17 6 11.0348 3.0025 0.7484 18 7 12.0399 2.3458 0.2118 19 14 11.2903 4.7366 1.3943 20 1 10.9724 4.7766 2.8443 21 1 12.7047 5.1386 1.1869 22 1 10.3970 5.6728 0.6657 23 6 5.8336 -0.6266 1.2111 24 6 4.3808 -1.1093 1.2525 25 6 2.2233 -1.1160 -0.0005 26 8 1.8379 -2.2654 -0.0006 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5134 -0.8902 29 1 -0.3634 -0.5142 0.8897 30 1 4.2633 1.4743 -0.0010 31 1 3.8862 -0.7045 -2.1372 32 1 4.3592 -2.1987 -1.2927 33 1 5.8533 0.4628 -1.2049 34 1 6.3617 -0.9935 -2.0933 35 1 8.4477 -1.5297 0.6372 36 1 8.3064 -0.8923 -1.0186 37 1 6.1695 1.3341 0.0166 38 1 7.4333 2.5862 0.0752 39 1 7.3651 1.4539 -1.2966 40 1 7.9359 -0.3541 2.4497 41 1 8.4683 1.3430 2.5194 42 1 6.7684 0.9576 2.1582 43 1 10.2417 0.3255 0.8464 44 1 9.8186 0.9833 -0.7525 45 1 12.9143 2.7616 0.1524 46 1 6.3634 -0.9928 2.0905 47 1 5.8542 0.4632 1.2020 48 1 3.8879 -0.7041 2.1362 49 1 4.3598 -2.1984 1.2915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377703071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:43 Heat of formation + Delta-G solvation = -4.950018 kcal Electronic energy + Delta-G solvation = -29826.350831 eV Core-core repulsion = 25983.741683 eV Total energy + Delta-G solvation = -3842.609148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.94773 -40.10949 -38.84005 -36.96190 -35.74963 -34.28084 -32.45931 -31.49292 -30.90087 -28.53428 -27.41806 -27.00004 -26.68990 -24.36700 -23.15691 -22.85276 -22.18263 -20.83215 -19.81205 -18.35906 -18.14638 -17.07744 -16.65045 -16.24142 -15.83668 -15.77392 -15.51695 -15.39871 -15.00505 -14.44410 -14.35346 -14.33901 -13.66237 -13.61184 -13.31917 -13.07527 -12.92743 -12.85455 -12.64353 -12.22412 -11.87678 -11.72906 -11.34133 -11.27386 -11.15746 -11.02967 -10.96590 -10.79078 -10.77513 -10.55792 -10.32444 -10.16336 -10.08956 -9.94544 -9.83005 -9.60817 -9.45460 -9.05557 -8.39868 -7.73166 -6.04237 -4.05476 1.35807 1.97250 2.75787 2.87292 3.28751 3.34374 3.36061 3.68596 4.09959 4.24237 4.38780 4.41516 4.69395 4.95514 5.00345 5.05241 5.17839 5.20146 5.25519 5.30121 5.33027 5.37978 5.41181 5.49046 5.59363 5.60635 5.71787 5.79013 5.85498 5.92815 6.00734 6.08485 6.16294 6.27388 6.36079 6.48834 6.56129 6.58173 6.77610 6.89154 6.98603 7.12026 7.17956 7.27721 7.34778 7.59990 7.73065 7.89181 7.93998 8.37199 8.99482 9.57912 11.06764 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.003355 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.556591 B = 8343.836694 C = 9114.611942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.582 5.582 3 C 0.702 3.298 4 O -0.545 6.545 5 N -0.715 5.715 6 C 0.123 3.877 7 C -0.108 4.108 8 C 0.031 3.969 9 N -0.532 5.532 10 C 0.063 3.937 11 C -0.090 4.090 12 C -0.142 4.142 13 C -0.151 4.151 14 C 0.038 3.962 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.029 3.971 24 C -0.114 4.114 25 C 0.533 3.467 26 O -0.463 6.463 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.440 0.560 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.260 0.740 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.057 -7.941 -0.908 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.330 5.330 3 C 0.402 3.598 4 O -0.419 6.419 5 N -0.381 5.381 6 C 0.033 3.967 7 C -0.147 4.147 8 C -0.097 4.097 9 N -0.256 5.256 10 C -0.064 4.064 11 C -0.091 4.091 12 C -0.199 4.199 13 C -0.208 4.208 14 C 0.001 3.999 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.715 3.285 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.098 4.098 24 C -0.153 4.153 25 C 0.320 3.680 26 O -0.331 6.331 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.287 0.713 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.498 -8.495 -0.959 21.290 hybrid contribution 0.663 2.116 0.284 2.235 sum -18.834 -6.379 -0.674 19.897 Atomic orbital electron populations 1.21840 0.75242 1.05050 1.03353 1.46353 1.09538 1.08165 1.68898 1.15955 0.82311 0.84069 0.77441 1.91012 1.75304 1.20264 1.55320 1.45818 1.06459 1.07584 1.78236 1.21166 0.93592 0.81269 1.00713 1.21758 0.95934 1.03098 0.93909 1.22645 0.92706 1.00101 0.94249 1.62201 1.03553 1.58734 1.01079 1.22444 0.86267 0.96013 1.01692 1.21195 0.99938 0.93361 0.94643 1.22367 0.96116 1.01702 0.99685 1.22594 1.00591 1.01189 0.96379 1.19079 0.87862 0.96138 0.96841 1.21166 0.94957 0.99764 1.39222 0.92461 1.25004 0.96315 0.97569 0.95496 1.69946 1.01242 1.37389 1.44842 0.86746 0.77111 0.85209 0.79452 1.20321 1.21379 1.20337 1.23206 0.91988 0.99821 0.94782 1.21876 0.96465 1.03094 0.93823 1.20773 0.88312 0.84765 0.74173 1.90786 1.79150 1.17704 1.45501 0.88502 0.90515 0.90503 0.71326 0.90770 0.88708 0.91772 0.89991 0.90844 0.91284 0.94456 0.91206 0.93259 0.93677 0.91079 0.93285 0.96526 0.96779 0.92993 0.88817 0.90993 0.90759 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.89 59.85 0.65 1.31 16 2 N -0.58 -6.08 3.01 -128.25 -0.39 -6.46 16 3 C 0.70 8.48 8.63 -87.79 -0.76 7.72 16 4 O -0.55 -8.24 17.24 5.33 0.09 -8.15 16 5 N -0.72 -7.59 5.33 -53.85 -0.29 -7.88 16 6 C 0.12 1.25 0.84 -133.08 -0.11 1.13 16 7 C -0.11 -1.06 5.14 -26.89 -0.14 -1.19 16 8 C 0.03 0.34 4.71 -3.77 -0.02 0.32 16 9 N -0.53 -6.56 4.84 -234.52 -1.14 -7.69 16 10 C 0.06 0.94 4.92 -3.83 -0.02 0.92 16 11 C -0.09 -1.55 0.53 -154.51 -0.08 -1.64 16 12 C -0.14 -2.27 6.32 37.16 0.23 -2.04 16 13 C -0.15 -2.46 7.08 37.16 0.26 -2.20 16 14 C 0.04 0.89 4.01 -27.89 -0.11 0.78 16 15 C -0.51 -13.21 7.11 -34.44 -0.24 -13.45 16 16 H 0.06 1.43 6.15 -52.49 -0.32 1.11 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.03 0.33 3.29 -3.77 -0.01 0.32 16 24 C -0.11 -1.14 5.15 -26.89 -0.14 -1.28 16 25 C 0.53 5.84 6.96 -10.73 -0.07 5.76 16 26 O -0.46 -5.94 17.86 5.60 0.10 -5.84 16 27 H 0.10 0.72 7.45 -51.93 -0.39 0.33 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.44 4.64 6.45 -40.82 -0.26 4.38 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.75 3.38 -51.93 -0.18 0.57 16 34 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 35 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 36 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 37 H 0.04 0.48 2.04 -51.93 -0.11 0.38 16 38 H 0.07 1.28 6.44 -51.93 -0.33 0.94 16 39 H 0.05 0.78 7.33 -51.93 -0.38 0.40 16 40 H 0.04 0.68 6.30 -51.93 -0.33 0.35 16 41 H 0.07 1.37 6.35 -51.93 -0.33 1.05 16 42 H 0.05 0.69 5.04 -51.93 -0.26 0.43 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.09 1.11 5.90 -51.93 -0.31 0.80 16 47 H 0.07 0.88 2.31 -51.93 -0.12 0.76 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -30.35 355.54 -8.25 -38.60 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.05 Total: 3.31 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.66 Total: -2.05 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.07 Total: -47.14 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.19 Total: -13.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.35 -8.25 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377703071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.653 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds