Wall clock time and date at job start Tue Mar 31 2020 13:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.52993 * 109.47345 * 65.00157 * 3 2 1 5 5 C 1.52998 * 109.47227 * 184.99985 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 7 7 C 1.41375 * 126.80421 * 274.99969 * 6 3 2 8 8 C 1.35450 * 103.98445 * 180.02562 * 7 6 3 9 9 C 1.50704 * 126.77275 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47068 * 89.99959 * 9 8 7 11 11 C 1.34780 * 119.99958 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00322 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99673 * 179.97438 * 11 10 9 14 14 H 1.08996 * 109.47355 * 40.00395 * 13 11 10 15 15 N 1.46903 * 109.47007 * 159.99838 * 13 11 10 16 16 C 1.52998 * 109.47426 * 280.00046 * 13 11 10 17 17 C 1.52993 * 109.47340 * 175.00321 * 16 13 11 18 18 C 1.50696 * 109.47280 * 180.02562 * 17 16 13 19 19 H 1.08006 * 120.00013 * 359.97438 * 18 17 16 20 20 C 1.37885 * 120.00470 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99565 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00433 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47527 * 89.99771 * 22 20 18 24 24 H 1.48498 * 109.46945 * 210.00186 * 22 20 18 25 25 H 1.48503 * 109.46777 * 329.99711 * 22 20 18 26 26 O 1.34035 * 106.44963 * 359.97438 * 8 7 6 27 27 N 1.20920 * 111.56674 * 359.70910 * 26 8 7 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 34 34 H 1.09002 * 109.46975 * 304.99831 * 4 3 2 35 35 H 1.08997 * 109.47674 * 64.99770 * 4 3 2 36 36 H 1.09002 * 109.47017 * 299.99820 * 5 4 3 37 37 H 1.09004 * 109.47339 * 59.99924 * 5 4 3 38 38 H 1.09001 * 109.47528 * 179.97438 * 5 4 3 39 39 H 1.07998 * 128.00821 * 0.03193 * 7 6 3 40 40 H 1.08999 * 109.46811 * 209.99925 * 9 8 7 41 41 H 1.09000 * 109.47294 * 330.00095 * 9 8 7 42 42 H 0.97005 * 119.99987 * 0.02562 * 10 9 8 43 43 H 1.00894 * 111.00130 * 296.05159 * 15 13 11 44 44 H 1.00906 * 111.00006 * 60.00112 * 15 13 11 45 45 H 1.09007 * 109.46805 * 295.00348 * 16 13 11 46 46 H 1.08999 * 109.47110 * 54.99758 * 16 13 11 47 47 H 1.09007 * 109.47194 * 299.99789 * 17 16 13 48 48 H 1.08999 * 109.47478 * 59.99663 * 17 16 13 49 49 H 0.96999 * 120.00175 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0354 3.6024 1.2558 6 6 3.5419 1.4442 -0.1238 7 6 4.4785 1.3139 0.9271 8 6 5.6798 1.3768 0.3046 9 6 7.0375 1.2895 0.9529 10 7 7.4660 -0.1105 1.0021 11 6 8.6580 -0.4318 1.5430 12 8 9.3757 0.4380 1.9893 13 6 9.0985 -1.8721 1.5941 14 1 8.8200 -2.3704 0.6656 15 7 10.5564 -1.9325 1.7640 16 6 8.4182 -2.5720 2.7723 17 6 8.7668 -4.0615 2.7511 18 6 8.0963 -4.7510 3.9112 19 1 7.4832 -4.1834 4.5956 20 6 8.2655 -6.1065 4.0991 21 7 9.0118 -6.7977 3.2655 22 14 7.4338 -6.9612 5.5368 23 1 6.0910 -7.4385 5.1195 24 1 8.2582 -8.1183 5.9689 25 1 7.2911 -6.0062 6.6651 26 8 5.4228 1.5310 -1.0018 27 7 4.2338 1.5601 -1.2204 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6054 1.9815 -0.8419 34 1 0.5563 2.0471 1.4401 35 1 2.1408 1.6420 2.1426 36 1 3.1144 3.6819 1.1230 37 1 1.5298 4.0870 0.4205 38 1 1.7467 4.0899 2.1870 39 1 4.2817 1.1921 1.9820 40 1 7.7553 1.8690 0.3722 41 1 6.9829 1.6886 1.9657 42 1 6.8922 -0.8062 0.6448 43 1 11.0301 -1.5340 0.9673 44 1 10.8400 -1.4769 2.6185 45 1 8.7655 -2.1308 3.7067 46 1 7.3380 -2.4504 2.6927 47 1 8.4195 -4.5027 1.8167 48 1 9.8471 -4.1831 2.8307 49 1 9.1312 -7.7512 3.3978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424121084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:04 Heat of formation + Delta-G solvation = -32.789321 kcal Electronic energy + Delta-G solvation = -27093.743379 eV Core-core repulsion = 23249.927028 eV Total energy + Delta-G solvation = -3843.816351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.04073 -41.04613 -38.53368 -37.00136 -36.38627 -34.79361 -34.19161 -32.97530 -32.60737 -31.90297 -28.88104 -28.00788 -27.37363 -25.06266 -24.52764 -23.57689 -22.41809 -22.25798 -21.28554 -20.67111 -18.95083 -18.69543 -18.29136 -17.87937 -17.27880 -16.84163 -16.45000 -16.21612 -16.13273 -15.58708 -15.35512 -15.14637 -15.11250 -14.93375 -14.43295 -14.32454 -14.25910 -13.77566 -13.66325 -13.44105 -13.35576 -12.91986 -12.78253 -12.70265 -12.50484 -12.34233 -12.31396 -12.24266 -12.07662 -11.77991 -11.64773 -11.60363 -11.42383 -11.25671 -11.02608 -10.92013 -10.62977 -10.46841 -10.27886 -9.59757 -8.12222 -6.22276 0.24242 1.16100 1.42856 1.44407 1.47710 1.55161 1.88714 2.30385 2.46266 3.03842 3.21147 3.27993 3.58647 3.76019 3.84975 3.92386 4.00140 4.06029 4.13522 4.18672 4.31866 4.34407 4.39454 4.46542 4.53169 4.57448 4.65724 4.73389 4.81166 4.86842 4.94369 4.96928 4.97507 5.08661 5.19598 5.19783 5.21549 5.26816 5.28712 5.42066 5.45143 5.59575 5.87142 6.01294 6.11005 6.32262 6.36367 6.55523 6.97179 7.05160 7.19329 7.45951 8.99044 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.002775 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.077176 B =10089.405890 C =12090.129589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.009 4.009 4 C -0.114 4.114 5 C -0.153 4.153 6 C 0.028 3.972 7 C -0.196 4.196 8 C -0.049 4.049 9 C 0.206 3.794 10 N -0.716 5.716 11 C 0.497 3.503 12 O -0.573 6.573 13 C 0.085 3.915 14 H 0.109 0.891 15 N -0.819 5.819 16 C -0.081 4.081 17 C 0.038 3.962 18 C -0.542 4.542 19 H 0.058 0.942 20 C 0.000 4.000 21 N -0.931 5.931 22 Si 0.959 3.041 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.265 1.265 26 O 0.090 5.910 27 N -0.387 5.387 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.193 0.807 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.414 0.586 43 H 0.347 0.653 44 H 0.347 0.653 45 H 0.046 0.954 46 H 0.069 0.931 47 H -0.008 1.008 48 H 0.005 0.995 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 20.452 -6.316 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.028 4.028 4 C -0.152 4.152 5 C -0.210 4.210 6 C -0.130 4.130 7 C -0.218 4.218 8 C -0.113 4.113 9 C 0.082 3.918 10 N -0.370 5.370 11 C 0.283 3.717 12 O -0.453 6.453 13 C -0.030 4.030 14 H 0.126 0.874 15 N -0.349 5.349 16 C -0.120 4.120 17 C 0.001 3.999 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.784 3.216 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.189 1.189 26 O 0.025 5.975 27 N -0.091 5.091 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.210 0.790 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.250 0.750 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.010 0.990 48 H 0.024 0.976 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.758 20.272 -7.325 26.701 hybrid contribution -0.300 -0.074 0.934 0.984 sum -16.058 20.198 -6.391 26.583 Atomic orbital electron populations 1.21810 0.93782 1.02424 1.02723 1.21525 0.97386 0.94271 1.02100 1.19778 0.84494 0.97958 1.00595 1.21645 1.02869 0.95335 0.95347 1.21795 1.00712 0.96247 1.02281 1.23955 0.99665 1.01091 0.88301 1.22756 0.89913 1.06378 1.02720 1.24370 0.98251 1.04840 0.83842 1.19624 0.87283 0.84036 1.00892 1.46087 1.19998 1.08882 1.62039 1.22310 0.80679 0.92942 0.75802 1.90662 1.54837 1.51393 1.48371 1.21647 0.90115 0.89291 1.01996 0.87352 1.58967 1.03473 1.63781 1.08642 1.21391 0.98933 0.96552 0.95104 1.18836 0.96035 0.90361 0.94705 1.21752 1.30012 0.93850 1.12382 0.92415 1.25909 0.96056 0.98616 0.99138 1.70108 1.40345 1.07873 1.38822 0.85546 0.78437 0.78038 0.79609 1.19725 1.21143 1.18899 1.84827 1.19620 1.67205 1.25878 1.73875 0.89585 1.20563 1.25113 0.90972 0.92436 0.92241 0.93288 0.91214 0.89885 0.89063 0.90757 0.94119 0.92885 0.91393 0.78984 0.88890 0.87104 0.75007 0.83934 0.83945 0.93526 0.91281 0.98951 0.97611 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 71.98 0.70 -0.88 16 2 C -0.11 -1.59 5.38 30.59 0.16 -1.42 16 3 C -0.01 -0.13 2.33 -11.54 -0.03 -0.15 16 4 C -0.11 -1.18 5.00 30.59 0.15 -1.03 16 5 C -0.15 -1.73 9.72 71.98 0.70 -1.03 16 6 C 0.03 0.53 5.32 43.58 0.23 0.76 16 7 C -0.20 -3.18 9.77 22.40 0.22 -2.96 16 8 C -0.05 -0.88 6.86 25.04 0.17 -0.71 16 9 C 0.21 3.61 6.24 85.63 0.53 4.15 16 10 N -0.72 -14.97 5.55 -466.79 -2.59 -17.56 16 11 C 0.50 13.65 7.07 87.66 0.62 14.27 16 12 O -0.57 -18.65 16.25 -3.03 -0.05 -18.69 16 13 C 0.09 2.65 3.15 44.17 0.14 2.79 16 14 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 15 N -0.82 -26.35 8.44 -171.80 -1.45 -27.80 16 16 C -0.08 -3.10 4.78 30.59 0.15 -2.95 16 17 C 0.04 1.92 4.86 29.84 0.15 2.06 16 18 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 19 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 22 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 26 O 0.09 2.00 11.20 71.68 0.80 2.80 16 27 N -0.39 -8.98 12.07 -49.55 -0.60 -9.58 16 28 H 0.07 0.58 6.46 -2.39 -0.02 0.57 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 0.70 6.34 -2.39 -0.02 0.69 16 35 H 0.07 0.72 7.23 -2.39 -0.02 0.70 16 36 H 0.04 0.57 7.00 -2.39 -0.02 0.55 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.19 2.29 7.54 -2.91 -0.02 2.27 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.41 7.73 8.46 -92.70 -0.78 6.95 16 43 H 0.35 9.52 9.06 -89.70 -0.81 8.71 16 44 H 0.35 11.30 8.58 -89.69 -0.77 10.53 16 45 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 47 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 48 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 49 H 0.26 14.94 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -69.48 402.69 1.62 -67.86 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -1.40 Total: 29.82 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.59 Total: -16.53 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.35 Total: -111.08 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.75 Total: -15.90 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -69.48 1.62 -67.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424121084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.075 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds