Wall clock time and date at job start Tue Mar 31 2020 14:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.53002 * 109.46999 * 240.00484 * 2 1 3 5 5 N 1.46498 * 109.47381 * 120.00630 * 2 1 3 6 6 C 1.46760 * 124.34917 * 59.99569 * 5 2 1 7 7 C 1.54479 * 105.46986 * 162.96395 * 6 5 2 8 8 H 1.09004 * 110.96900 * 143.57213 * 7 6 5 9 9 N 1.46503 * 110.97435 * 267.29806 * 7 6 5 10 10 C 1.34773 * 119.99931 * 201.91617 * 9 7 6 11 11 O 1.21579 * 120.00604 * 4.86634 * 10 9 7 12 12 N 1.34783 * 119.99404 * 184.87106 * 10 9 7 13 13 C 1.46504 * 119.99807 * 184.88591 * 12 10 9 14 14 C 1.53000 * 109.46803 * 185.23090 * 13 12 10 15 15 C 1.50692 * 115.54820 * 65.21119 * 14 13 12 16 16 H 1.08005 * 119.99784 * 273.64085 * 15 14 13 17 17 C 1.37880 * 120.00266 * 93.64666 * 15 14 13 18 18 N 1.31521 * 120.00014 * 174.02799 * 17 15 14 19 19 Si 1.86799 * 119.99953 * 354.03141 * 17 15 14 20 20 H 1.48504 * 109.46955 * 94.56344 * 19 17 15 21 21 H 1.48502 * 109.46740 * 214.56446 * 19 17 15 22 22 H 1.48496 * 109.47241 * 334.56434 * 19 17 15 23 23 C 1.53003 * 117.49963 * 279.53074 * 14 13 12 24 24 C 1.53008 * 117.49393 * 210.87324 * 14 13 12 25 25 C 1.54633 * 101.79890 * 25.43795 * 7 6 5 26 26 C 1.34421 * 124.34608 * 239.97896 * 5 2 1 27 27 O 1.21281 * 124.94364 * 0.44973 * 26 5 2 28 28 H 1.09001 * 109.46767 * 299.99763 * 1 2 3 29 29 H 1.09005 * 109.47171 * 59.99651 * 1 2 3 30 30 H 1.08996 * 109.47074 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47238 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46941 * 300.00834 * 3 2 1 33 33 H 1.09008 * 109.46427 * 60.00268 * 3 2 1 34 34 H 1.08999 * 109.47278 * 300.00283 * 4 2 1 35 35 H 1.09005 * 109.47269 * 59.99925 * 4 2 1 36 36 H 1.08997 * 109.47106 * 179.97438 * 4 2 1 37 37 H 1.09002 * 110.24712 * 43.96596 * 6 5 2 38 38 H 1.08995 * 110.24505 * 281.96148 * 6 5 2 39 39 H 0.96995 * 119.99276 * 21.90699 * 9 7 6 40 40 H 0.96999 * 120.00169 * 4.88399 * 12 10 9 41 41 H 1.09001 * 109.46731 * 65.22947 * 13 12 10 42 42 H 1.09000 * 109.47017 * 305.23401 * 13 12 10 43 43 H 0.96994 * 120.00182 * 179.97438 * 18 17 15 44 44 H 1.08998 * 117.49452 * 0.02562 * 23 14 13 45 45 H 1.09003 * 117.49490 * 145.02387 * 23 14 13 46 46 H 1.08998 * 117.49543 * 214.98219 * 24 14 13 47 47 H 1.08991 * 117.49889 * 359.97438 * 24 14 13 48 48 H 1.08993 * 110.48797 * 93.86367 * 25 7 6 49 49 H 1.09000 * 110.48330 * 216.50106 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.7232 -2.0908 1.5223 7 6 2.7669 -2.4947 2.5872 8 1 2.3304 -3.1669 3.3259 9 7 3.9457 -3.1004 1.9628 10 6 4.7524 -3.9037 2.6841 11 8 4.4552 -4.1969 3.8260 12 7 5.8888 -4.3819 2.1396 13 6 6.7112 -5.3394 2.8835 14 6 7.9978 -5.6197 2.1046 15 6 8.9319 -4.4474 1.9490 16 1 8.7994 -3.7565 1.1294 17 6 9.9555 -4.2568 2.8528 18 7 10.8406 -3.3048 2.6527 19 14 10.0854 -5.3508 4.3613 20 1 11.0094 -6.4781 4.0772 21 1 10.6075 -4.5586 5.5037 22 1 8.7425 -5.8853 4.7022 23 6 7.9206 -6.6198 0.9492 24 6 8.6246 -7.0077 2.2520 25 6 3.1170 -1.1283 3.2209 26 6 2.7947 -0.1236 2.1355 27 8 3.1805 1.0261 2.1166 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2495 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2496 37 1 1.8286 -2.7152 0.6350 38 1 0.7158 -2.1790 1.9290 39 1 4.1453 -2.9234 1.0303 40 1 6.1622 -4.0922 1.2551 41 1 6.1568 -6.2685 3.0159 42 1 6.9606 -4.9228 3.8594 43 1 11.5606 -3.1705 3.2886 44 1 6.9530 -7.0777 0.7439 45 1 8.5457 -6.4299 0.0766 46 1 9.7125 -7.0729 2.2359 47 1 8.1206 -7.7208 2.9041 48 1 2.5022 -0.9480 4.1027 49 1 4.1755 -1.0870 3.4778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430845795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:20 Heat of formation + Delta-G solvation = -33.425803 kcal Electronic energy + Delta-G solvation = -28363.976029 eV Core-core repulsion = 24520.132079 eV Total energy + Delta-G solvation = -3843.843951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10405 -39.45799 -37.29736 -36.88960 -36.21866 -33.54476 -32.99670 -32.10782 -29.68793 -28.14458 -27.67664 -27.21621 -26.40138 -25.08025 -22.18739 -21.81674 -21.51078 -20.45309 -19.33822 -18.79336 -17.94079 -17.01760 -16.71014 -16.32649 -15.62872 -15.23297 -15.05810 -14.86586 -14.34226 -14.24876 -14.16571 -13.97414 -13.83113 -13.65445 -13.24528 -13.15602 -12.77167 -12.56085 -12.46683 -12.34811 -12.29239 -12.01998 -11.92194 -11.76142 -11.66219 -11.45570 -11.27412 -11.17297 -10.84558 -10.49091 -10.16087 -9.91319 -9.64324 -9.60973 -9.18804 -9.04532 -8.89784 -8.65440 -8.58677 -8.24336 -6.15742 -4.19665 2.51722 2.69803 2.92749 3.28466 3.40024 3.45679 3.54677 4.14068 4.23554 4.40235 4.49031 4.57500 4.61213 4.67817 4.73342 4.93444 5.01626 5.11201 5.14121 5.21460 5.29184 5.34251 5.42013 5.45500 5.55024 5.62351 5.66360 5.67599 5.73015 5.83880 5.98922 6.02101 6.03694 6.13503 6.21424 6.39584 6.43897 6.46018 6.56523 6.67725 6.96786 6.98578 7.07081 7.11104 7.30183 7.67847 8.09928 8.40495 8.43474 8.84312 8.98439 9.47460 10.95705 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002950 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.385669 B = 9490.135225 C = 9714.937669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.159 4.159 5 N -0.614 5.614 6 C 0.096 3.904 7 C 0.158 3.842 8 H 0.118 0.882 9 N -0.744 5.744 10 C 0.703 3.297 11 O -0.599 6.599 12 N -0.718 5.718 13 C 0.175 3.825 14 C -0.014 4.014 15 C -0.491 4.491 16 H 0.077 0.923 17 C 0.079 3.921 18 N -0.894 5.894 19 Si 0.881 3.119 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.257 1.257 23 C -0.180 4.180 24 C -0.192 4.192 25 C -0.172 4.172 26 C 0.521 3.479 27 O -0.526 6.526 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.399 0.601 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.854 2.146 -6.651 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.090 3.910 3 C -0.199 4.199 4 C -0.217 4.217 5 N -0.350 5.350 6 C -0.028 4.028 7 C 0.051 3.949 8 H 0.135 0.865 9 N -0.401 5.401 10 C 0.403 3.597 11 O -0.478 6.478 12 N -0.370 5.370 13 C 0.051 3.949 14 C -0.015 4.015 15 C -0.528 4.528 16 H 0.095 0.905 17 C -0.124 4.124 18 N -0.531 5.531 19 Si 0.709 3.291 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.181 1.181 23 C -0.217 4.217 24 C -0.230 4.230 25 C -0.214 4.214 26 C 0.310 3.690 27 O -0.402 6.402 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.230 0.770 40 H 0.233 0.767 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.129 0.871 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.744 2.598 -5.588 22.601 hybrid contribution 0.505 -0.383 -0.032 0.634 sum -21.240 2.215 -5.620 22.082 Atomic orbital electron populations 1.22185 0.94349 1.02300 1.02608 1.20461 0.93693 0.93111 0.83730 1.22101 1.02765 0.93101 1.01892 1.22207 1.02140 1.00622 0.96780 1.48445 1.51381 1.12433 1.22715 1.22358 0.98834 0.82402 0.99204 1.21533 0.85177 0.93606 0.94612 0.86456 1.45074 1.27805 1.52787 1.14437 1.15959 0.80551 0.78680 0.84507 1.90880 1.75509 1.64312 1.17137 1.45010 1.22181 1.48082 1.21751 1.21016 0.89351 0.89359 0.95176 1.19622 0.94571 0.90275 0.97073 1.20150 1.10712 1.08722 1.13193 0.90491 1.24988 0.94765 0.95008 0.97627 1.69895 1.14348 1.32355 1.36473 0.86827 0.79280 0.80324 0.82707 1.20603 1.22086 1.18084 1.22880 1.00233 1.05761 0.92869 1.22919 0.99794 0.99552 1.00739 1.22941 1.05881 0.94324 0.98218 1.20930 0.77045 0.87917 0.83153 1.90731 1.54224 1.17863 1.77374 0.92164 0.91348 0.92234 0.91117 0.92519 0.91298 0.92190 0.91275 0.91842 0.89584 0.89644 0.77011 0.76669 0.94228 0.91625 0.92478 0.90939 0.89425 0.89144 0.90634 0.87077 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.54 37.16 0.32 -0.68 16 2 C 0.17 1.44 1.20 -131.82 -0.16 1.28 16 3 C -0.14 -1.43 7.00 37.16 0.26 -1.17 16 4 C -0.16 -1.13 8.49 37.16 0.32 -0.81 16 5 N -0.61 -5.69 2.76 -157.54 -0.43 -6.13 16 6 C 0.10 0.68 6.21 -3.12 -0.02 0.66 16 7 C 0.16 1.58 3.51 -66.29 -0.23 1.35 16 8 H 0.12 1.21 7.57 -51.93 -0.39 0.82 16 9 N -0.74 -9.01 5.14 -57.07 -0.29 -9.30 16 10 C 0.70 11.90 8.55 -86.92 -0.74 11.16 16 11 O -0.60 -12.24 15.98 5.30 0.08 -12.15 16 12 N -0.72 -12.71 5.46 -65.22 -0.36 -13.07 16 13 C 0.18 3.58 5.23 -4.04 -0.02 3.56 16 14 C -0.01 -0.30 0.83 -155.66 -0.13 -0.43 16 15 C -0.49 -12.84 9.33 -34.44 -0.32 -13.16 16 16 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 17 C 0.08 2.20 5.46 -17.82 -0.10 2.11 16 18 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 19 Si 0.88 21.47 24.73 -169.99 -4.20 17.26 16 20 H -0.28 -6.65 7.10 56.52 0.40 -6.24 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.26 -5.99 5.96 56.52 0.34 -5.66 16 23 C -0.18 -3.35 9.96 -26.69 -0.27 -3.62 16 24 C -0.19 -3.88 7.41 -26.69 -0.20 -4.08 16 25 C -0.17 -1.97 6.59 -26.69 -0.18 -2.15 16 26 C 0.52 6.52 7.85 -10.81 -0.08 6.44 16 27 O -0.53 -8.46 13.99 5.56 0.08 -8.38 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 31 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.81 7.06 -51.92 -0.37 0.44 16 34 H 0.06 0.36 7.21 -51.93 -0.37 -0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.52 7.05 -51.93 -0.37 0.15 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.40 4.06 8.65 -40.82 -0.35 3.70 16 40 H 0.40 6.52 8.49 -40.82 -0.35 6.17 16 41 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.07 1.52 7.17 -51.93 -0.37 1.15 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.09 1.94 6.84 -51.93 -0.36 1.58 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.11 1.55 8.09 -51.93 -0.42 1.13 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -33.16 387.34 -8.47 -41.63 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.40 Total: 9.71 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.55 Total: 0.45 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.31 Total: -54.35 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.16 Total: -20.54 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.20 Total: 17.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.16 -8.47 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430845795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.201 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds