Wall clock time and date at job start Tue Mar 31 2020 14:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99778 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00657 * 4 2 1 6 6 C 1.37876 * 119.99724 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47345 * 59.99929 * 8 6 4 10 10 H 1.48502 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47320 * 300.00374 * 8 6 4 12 12 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 13 13 N 1.46499 * 109.47198 * 300.00182 * 12 2 1 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.09004 * 109.60218 * 324.39864 * 17 16 14 19 19 C 1.53344 * 109.60786 * 84.72084 * 17 16 14 20 20 C 1.53067 * 108.42935 * 187.28595 * 19 17 16 21 21 C 1.50179 * 109.89079 * 311.10024 * 20 19 17 22 22 O 1.21274 * 118.24671 * 197.56029 * 21 20 19 23 23 N 1.33356 * 123.50686 * 17.58115 * 21 20 19 24 24 C 1.45757 * 124.10725 * 357.77805 * 23 21 20 25 25 H 1.09004 * 109.30140 * 258.76173 * 24 23 21 26 26 C 1.53000 * 109.30000 * 139.38583 * 24 23 21 27 27 C 1.53006 * 117.49693 * 127.71035 * 26 24 23 28 28 C 1.52997 * 117.49747 * 59.05258 * 26 24 23 29 29 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 30 30 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 31 31 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 34 34 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 35 35 H 0.96999 * 119.99800 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47211 * 179.97438 * 12 2 1 37 37 H 1.09006 * 109.46815 * 59.99729 * 12 2 1 38 38 H 0.97000 * 120.00386 * 359.97438 * 13 12 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 40 40 H 1.08997 * 109.67275 * 307.02158 * 19 17 16 41 41 H 1.09006 * 109.66981 * 67.54835 * 19 17 16 42 42 H 1.08997 * 109.39805 * 71.22534 * 20 19 17 43 43 H 1.08997 * 109.40005 * 191.05736 * 20 19 17 44 44 H 0.96995 * 117.94852 * 177.77848 * 23 21 20 45 45 H 1.08997 * 115.54988 * 273.37717 * 26 24 23 46 46 H 1.08998 * 117.49674 * 359.97438 * 27 26 24 47 47 H 1.08993 * 117.49659 * 145.01922 * 27 26 24 48 48 H 1.09006 * 117.49753 * 214.97831 * 28 26 24 49 49 H 1.08998 * 117.50316 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4272 0.1440 4.7700 17 6 1.7857 -0.3532 6.1006 18 1 1.8282 -1.4423 6.0848 19 6 3.1527 0.2090 6.5089 20 6 3.5836 -0.4662 7.8132 21 6 2.4601 -0.4188 8.8086 22 8 2.7208 -0.6077 9.9778 23 7 1.1910 -0.1806 8.4754 24 6 0.7425 0.1083 7.1190 25 1 0.5852 1.1817 7.0124 26 6 -0.5771 -0.6203 6.8567 27 6 -1.7491 0.2092 6.3281 28 6 -1.7580 -0.2948 7.7734 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7090 1.1613 -3.4844 36 1 3.1300 -0.7215 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9943 0.7584 2.3565 39 1 0.8698 0.9328 4.6809 40 1 3.8838 -0.0007 5.7281 41 1 3.0761 1.2857 6.6608 42 1 3.8467 -1.5049 7.6134 43 1 4.4497 0.0546 8.2216 44 1 0.5246 -0.2008 9.1799 45 1 -0.4849 -1.6459 6.4996 46 1 -1.5801 1.2740 6.1676 47 1 -2.4281 -0.2709 5.6235 48 1 -2.4430 -1.1063 8.0192 49 1 -1.5948 0.4380 8.5636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458773397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:54 Heat of formation + Delta-G solvation = -53.096157 kcal Electronic energy + Delta-G solvation = -28277.306368 eV Core-core repulsion = 24432.609447 eV Total energy + Delta-G solvation = -3844.696921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00728 -39.53829 -38.21304 -36.67484 -35.84801 -33.99429 -33.32717 -32.45695 -30.83016 -28.85051 -25.75138 -25.66778 -25.25463 -24.63965 -23.10706 -22.46244 -21.29120 -20.65318 -19.72466 -18.83276 -18.09432 -17.72910 -16.42489 -16.18663 -15.83772 -15.72472 -15.17280 -15.09521 -14.75294 -14.70157 -14.26941 -14.11388 -13.74944 -13.53928 -13.05189 -12.89763 -12.64641 -12.38077 -12.20115 -11.99916 -11.91844 -11.77586 -11.42460 -11.26549 -11.21479 -10.86634 -10.77722 -10.74672 -10.59847 -10.40714 -10.23490 -9.98817 -9.85495 -9.65670 -9.44582 -9.33980 -9.10563 -8.82325 -8.43960 -8.25587 -6.04260 -4.14279 2.38252 2.61940 3.08748 3.28750 3.33121 3.37141 3.47452 3.54873 3.98451 4.17830 4.31812 4.37948 4.53967 4.59579 4.61040 4.71328 4.83590 4.84266 5.07982 5.13087 5.22679 5.25837 5.45736 5.52073 5.54822 5.72120 5.75229 5.80836 5.90077 6.17266 6.33349 6.44124 6.46287 6.49965 6.76296 6.79550 6.86425 7.00319 7.01354 7.04784 7.23143 7.36771 7.53365 7.67679 7.92455 7.98895 8.09975 8.35077 8.41588 8.85234 8.96769 9.51674 10.97115 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.002639 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.241802 B =10605.974592 C =11389.997427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.731 5.731 14 C 0.701 3.299 15 O -0.597 6.597 16 N -0.743 5.743 17 C 0.163 3.837 18 H 0.099 0.901 19 C -0.138 4.138 20 C -0.133 4.133 21 C 0.521 3.479 22 O -0.559 6.559 23 N -0.709 5.709 24 C 0.166 3.834 25 H 0.080 0.920 26 C -0.168 4.168 27 C -0.163 4.163 28 C -0.179 4.179 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.394 0.606 39 H 0.394 0.606 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.400 0.600 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 3.066 18.439 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.475 6.475 16 N -0.399 5.399 17 C 0.056 3.944 18 H 0.117 0.883 19 C -0.177 4.177 20 C -0.173 4.173 21 C 0.309 3.691 22 O -0.437 6.437 23 N -0.362 5.362 24 C 0.060 3.940 25 H 0.098 0.902 26 C -0.187 4.187 27 C -0.201 4.201 28 C -0.216 4.216 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.228 0.772 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.237 0.763 45 H 0.131 0.869 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.465 2.154 18.763 19.202 hybrid contribution -0.579 0.280 -0.810 1.034 sum -4.044 2.434 17.954 18.564 Atomic orbital electron populations 1.21820 0.97801 0.99131 0.99981 1.18348 0.92758 0.92739 0.90518 1.21822 0.98584 0.98372 0.99984 1.20955 1.31546 1.12135 0.89899 0.92462 1.24869 0.94846 0.94910 0.98832 1.69791 1.36654 1.22730 1.23329 0.86637 0.79261 0.79804 0.82174 1.20275 1.21348 1.20271 1.21593 0.97891 0.95404 0.82348 1.45500 1.55495 1.32969 1.04524 1.16001 0.80486 0.82873 0.80583 1.90897 1.42995 1.27672 1.85979 1.44899 1.57553 1.33411 1.04008 1.20811 0.92089 1.00596 0.80891 0.88335 1.22161 0.97993 1.00396 0.97153 1.21622 0.96974 1.04540 0.94164 1.20327 0.83992 0.75042 0.89767 1.90760 1.83036 1.50181 1.19773 1.45514 1.08878 1.72065 1.09701 1.20669 0.92424 0.98945 0.81912 0.90170 1.22636 0.89012 1.01208 1.05858 1.23001 1.00267 1.00026 0.96797 1.22955 1.00850 1.03856 0.93947 0.97564 0.89672 0.95479 0.95455 0.89668 0.97569 0.92959 0.92929 0.92952 0.77170 0.77217 0.89223 0.91034 0.87658 0.87765 0.76297 0.86851 0.88385 0.88102 0.88380 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 4 C -0.51 -12.96 8.01 -34.44 -0.28 -13.24 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.10 9.35 55.43 0.52 -22.59 16 8 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.15 3.06 4.50 -4.04 -0.02 3.04 16 13 N -0.73 -11.94 4.96 -65.22 -0.32 -12.26 16 14 C 0.70 11.00 8.53 -86.92 -0.74 10.26 16 15 O -0.60 -11.73 16.02 5.28 0.08 -11.65 16 16 N -0.74 -7.89 4.92 -58.54 -0.29 -8.17 16 17 C 0.16 1.56 1.86 -67.79 -0.13 1.44 16 18 H 0.10 1.17 7.53 -51.93 -0.39 0.78 16 19 C -0.14 -1.27 5.61 -26.52 -0.15 -1.42 16 20 C -0.13 -1.21 6.03 -28.10 -0.17 -1.38 16 21 C 0.52 5.59 7.71 -11.87 -0.09 5.50 16 22 O -0.56 -8.17 17.78 5.56 0.10 -8.07 16 23 N -0.71 -5.86 5.12 -54.85 -0.28 -6.14 16 24 C 0.17 1.20 2.79 -68.37 -0.19 1.01 16 25 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 26 C -0.17 -1.19 5.17 -90.62 -0.47 -1.66 16 27 C -0.16 -1.02 10.18 -26.69 -0.27 -1.29 16 28 C -0.18 -1.04 9.67 -26.69 -0.26 -1.30 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.08 2.05 6.07 -51.93 -0.32 1.74 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 2.06 6.07 -51.93 -0.32 1.74 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.39 5.71 6.18 -40.82 -0.25 5.45 16 39 H 0.39 3.20 8.60 -40.82 -0.35 2.85 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.40 3.03 7.90 -40.82 -0.32 2.71 16 45 H 0.11 0.98 8.07 -51.93 -0.42 0.56 16 46 H 0.10 0.52 8.04 -51.93 -0.42 0.10 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.47 7.91 -51.93 -0.41 0.06 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -30.41 386.31 -9.80 -40.21 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.08 Total: 8.70 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.33 Total: -1.21 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.37 Total: -49.16 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.18 Total: -19.72 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.41 -9.80 -40.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458773397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.887 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds