Wall clock time and date at job start Tue Mar 31 2020 14:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99778 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00657 * 4 2 1 6 6 C 1.37876 * 119.99724 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47345 * 59.99929 * 8 6 4 10 10 H 1.48502 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47320 * 300.00374 * 8 6 4 12 12 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 13 13 N 1.46499 * 109.47198 * 300.00182 * 12 2 1 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.09004 * 109.60218 * 324.39864 * 17 16 14 19 19 C 1.53344 * 109.60786 * 84.72084 * 17 16 14 20 20 C 1.53067 * 108.42935 * 187.28595 * 19 17 16 21 21 C 1.50179 * 109.89079 * 311.10024 * 20 19 17 22 22 O 1.21274 * 118.24671 * 197.56029 * 21 20 19 23 23 N 1.33356 * 123.50686 * 17.58115 * 21 20 19 24 24 C 1.45757 * 124.10725 * 357.77805 * 23 21 20 25 25 H 1.09004 * 109.30140 * 258.76173 * 24 23 21 26 26 C 1.53000 * 109.30000 * 139.38583 * 24 23 21 27 27 C 1.53006 * 117.49693 * 127.71035 * 26 24 23 28 28 C 1.52997 * 117.49747 * 59.05258 * 26 24 23 29 29 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 30 30 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 31 31 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 34 34 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 35 35 H 0.96999 * 119.99800 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47211 * 179.97438 * 12 2 1 37 37 H 1.09006 * 109.46815 * 59.99729 * 12 2 1 38 38 H 0.97000 * 120.00386 * 359.97438 * 13 12 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 40 40 H 1.08997 * 109.67275 * 307.02158 * 19 17 16 41 41 H 1.09006 * 109.66981 * 67.54835 * 19 17 16 42 42 H 1.08997 * 109.39805 * 71.22534 * 20 19 17 43 43 H 1.08997 * 109.40005 * 191.05736 * 20 19 17 44 44 H 0.96995 * 117.94852 * 177.77848 * 23 21 20 45 45 H 1.08997 * 115.54988 * 273.37717 * 26 24 23 46 46 H 1.08998 * 117.49674 * 359.97438 * 27 26 24 47 47 H 1.08993 * 117.49659 * 145.01922 * 27 26 24 48 48 H 1.09006 * 117.49753 * 214.97831 * 28 26 24 49 49 H 1.08998 * 117.50316 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4272 0.1440 4.7700 17 6 1.7857 -0.3532 6.1006 18 1 1.8282 -1.4423 6.0848 19 6 3.1527 0.2090 6.5089 20 6 3.5836 -0.4662 7.8132 21 6 2.4601 -0.4188 8.8086 22 8 2.7208 -0.6077 9.9778 23 7 1.1910 -0.1806 8.4754 24 6 0.7425 0.1083 7.1190 25 1 0.5852 1.1817 7.0124 26 6 -0.5771 -0.6203 6.8567 27 6 -1.7491 0.2092 6.3281 28 6 -1.7580 -0.2948 7.7734 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7090 1.1613 -3.4844 36 1 3.1300 -0.7215 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9943 0.7584 2.3565 39 1 0.8698 0.9328 4.6809 40 1 3.8838 -0.0007 5.7281 41 1 3.0761 1.2857 6.6608 42 1 3.8467 -1.5049 7.6134 43 1 4.4497 0.0546 8.2216 44 1 0.5246 -0.2008 9.1799 45 1 -0.4849 -1.6459 6.4996 46 1 -1.5801 1.2740 6.1676 47 1 -2.4281 -0.2709 5.6235 48 1 -2.4430 -1.1063 8.0192 49 1 -1.5948 0.4380 8.5636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458773397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:54 Heat of formation + Delta-G solvation = -73.524755 kcal Electronic energy + Delta-G solvation = -28278.192219 eV Core-core repulsion = 24432.609447 eV Total energy + Delta-G solvation = -3845.582772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86017 -40.75222 -39.03095 -38.14785 -36.78362 -35.05015 -34.83788 -33.40483 -32.48559 -29.75626 -27.50721 -27.38871 -26.59916 -25.76994 -23.88652 -23.06242 -22.06093 -21.72132 -20.63810 -20.47804 -19.33449 -18.53908 -17.73006 -17.22416 -17.12886 -16.65993 -16.52882 -16.17819 -16.06162 -15.52669 -15.34736 -15.24773 -14.84142 -14.64230 -14.61399 -14.33375 -13.94408 -13.50782 -13.20992 -13.14443 -13.05014 -12.75752 -12.65203 -12.59973 -12.49461 -12.35304 -12.20386 -12.11091 -12.04444 -11.43167 -11.34471 -11.31585 -11.16046 -11.07722 -10.84068 -10.66670 -10.37024 -10.24062 -10.18926 -9.63063 -7.99760 -6.14867 1.45480 1.47042 1.52845 1.54206 1.65791 2.20753 2.29849 2.48407 2.92062 3.24114 3.31100 3.39467 3.50419 3.67212 3.94980 4.02875 4.05224 4.11883 4.25138 4.30632 4.45578 4.50339 4.59451 4.75218 4.77489 4.82558 4.84031 4.99027 5.04574 5.07883 5.11651 5.12415 5.15707 5.22672 5.25835 5.28965 5.44079 5.51087 5.69018 5.70602 5.72675 5.75385 6.12387 6.21188 6.23935 6.27226 6.47788 6.89853 7.12425 7.23071 7.52878 7.70816 8.98715 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.002639 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.241802 B =10605.974592 C =11389.997427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.169 3.831 13 N -0.724 5.724 14 C 0.702 3.298 15 O -0.638 6.638 16 N -0.718 5.718 17 C 0.162 3.838 18 H 0.074 0.926 19 C -0.131 4.131 20 C -0.128 4.128 21 C 0.521 3.479 22 O -0.602 6.602 23 N -0.697 5.697 24 C 0.177 3.823 25 H 0.109 0.891 26 C -0.181 4.181 27 C -0.159 4.159 28 C -0.170 4.170 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.260 0.740 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.406 0.594 39 H 0.412 0.588 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.407 0.593 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 4.691 19.519 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.045 3.955 13 N -0.379 5.379 14 C 0.402 3.598 15 O -0.520 6.520 16 N -0.374 5.374 17 C 0.055 3.945 18 H 0.092 0.908 19 C -0.170 4.170 20 C -0.169 4.169 21 C 0.309 3.691 22 O -0.484 6.484 23 N -0.348 5.348 24 C 0.072 3.928 25 H 0.127 0.873 26 C -0.200 4.200 27 C -0.197 4.197 28 C -0.207 4.207 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.243 0.757 39 H 0.249 0.751 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.244 0.756 45 H 0.111 0.889 46 H 0.134 0.866 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.579 3.829 19.855 20.733 hybrid contribution -0.283 -0.256 -1.120 1.183 sum -4.862 3.572 18.736 19.683 Atomic orbital electron populations 1.21656 0.97064 0.98566 1.00431 1.18333 0.93255 0.93007 0.90129 1.21659 0.97849 0.97819 1.00424 1.21279 1.31688 1.12179 0.91705 0.93824 1.25404 0.95182 0.95581 1.00814 1.69893 1.36985 1.23224 1.23584 0.85881 0.78635 0.78854 0.79809 1.20355 1.20886 1.20341 1.21077 0.96633 0.94569 0.83262 1.45150 1.55807 1.33175 1.03790 1.16071 0.80093 0.82494 0.81169 1.90881 1.44841 1.29668 1.86577 1.44586 1.56599 1.33199 1.03023 1.20853 0.93448 0.99387 0.80778 0.90807 1.22081 0.96933 1.01558 0.96381 1.21594 0.96947 1.04586 0.93738 1.20522 0.84839 0.74456 0.89255 1.90745 1.83783 1.52416 1.21437 1.45454 1.08309 1.70746 1.10322 1.20654 0.91408 1.00343 0.80400 0.87337 1.22508 0.89394 1.00510 1.07578 1.23089 0.99031 1.00678 0.96880 1.23030 0.99521 1.03980 0.94201 0.94130 0.92069 0.96506 0.96452 0.92073 0.94149 0.93074 0.94722 0.94826 0.75720 0.75083 0.91165 0.88953 0.87994 0.86683 0.75585 0.88867 0.86648 0.88706 0.88421 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.08 71.98 0.58 -4.44 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.04 8.08 71.98 0.58 -4.46 16 4 C -0.53 -27.39 8.01 25.60 0.21 -27.19 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -46.77 9.35 21.45 0.20 -46.57 16 8 Si 0.94 41.92 29.54 68.60 2.03 43.94 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.17 6.86 4.50 86.38 0.39 7.25 16 13 N -0.72 -22.46 4.96 -478.52 -2.37 -24.83 16 14 C 0.70 21.15 8.53 179.05 1.53 22.68 16 15 O -0.64 -25.16 16.02 -4.01 -0.06 -25.22 16 16 N -0.72 -13.56 4.92 -457.38 -2.25 -15.82 16 17 C 0.16 2.83 1.86 45.08 0.08 2.92 16 18 H 0.07 1.73 7.53 -2.39 -0.02 1.71 16 19 C -0.13 -2.18 5.61 30.73 0.17 -2.00 16 20 C -0.13 -2.20 6.03 29.71 0.18 -2.03 16 21 C 0.52 10.56 7.71 87.71 0.68 11.24 16 22 O -0.60 -17.27 17.78 -3.01 -0.05 -17.32 16 23 N -0.70 -10.07 5.12 -446.63 -2.29 -12.36 16 24 C 0.18 2.08 2.79 45.10 0.13 2.21 16 25 H 0.11 0.79 7.86 -2.38 -0.02 0.77 16 26 C -0.18 -2.16 5.17 -10.79 -0.06 -2.22 16 27 C -0.16 -1.49 10.18 30.62 0.31 -1.18 16 28 C -0.17 -1.51 9.67 30.62 0.30 -1.22 16 29 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 30 H 0.06 2.90 6.07 -2.38 -0.01 2.89 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 2.90 6.07 -2.38 -0.01 2.89 16 34 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 35 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.41 10.49 6.18 -92.71 -0.57 9.92 16 39 H 0.41 5.10 8.60 -92.71 -0.80 4.31 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.18 8.13 -2.38 -0.02 1.16 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.41 5.24 7.90 -92.71 -0.73 4.51 16 45 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 46 H 0.12 0.70 8.04 -2.39 -0.02 0.68 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.11 0.69 7.91 -2.39 -0.02 0.67 16 Total: -1.00 -67.12 386.31 -0.45 -67.56 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -1.12 Total: 24.75 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.48 Total: 5.87 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -6.71 Total: -99.58 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.12 Total: -42.55 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -67.12 -0.45 -67.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458773397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.960 kcal (2) G-P(sol) polarization free energy of solvation -67.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds