Wall clock time and date at job start Tue Mar 31 2020 13:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53001 * 109.46972 * 239.99708 * 2 1 3 5 5 C 1.52998 * 109.47214 * 187.35571 * 4 2 1 6 6 H 1.08998 * 109.47238 * 299.11665 * 5 4 2 7 7 N 1.46909 * 109.46912 * 59.10966 * 5 4 2 8 8 C 1.46897 * 110.99981 * 259.40143 * 7 5 4 9 9 C 1.50696 * 109.47144 * 175.63596 * 8 7 5 10 10 C 1.38636 * 119.74728 * 269.72802 * 9 8 7 11 11 C 1.37619 * 120.24817 * 179.72045 * 10 9 8 12 12 C 1.40715 * 119.74709 * 0.56923 * 11 10 9 13 13 C 1.41393 * 120.24981 * 179.68173 * 12 11 10 14 14 H 1.07997 * 120.00096 * 157.53347 * 13 12 11 15 15 C 1.39948 * 119.99724 * 337.54022 * 13 12 11 16 16 N 1.30822 * 119.99908 * 335.00788 * 15 13 12 17 17 Si 1.86800 * 120.00258 * 155.01274 * 15 13 12 18 18 H 1.48499 * 109.46936 * 94.98149 * 17 15 13 19 19 H 1.48492 * 109.47339 * 214.98694 * 17 15 13 20 20 H 1.48503 * 109.46998 * 334.98555 * 17 15 13 21 21 C 1.40716 * 119.50826 * 359.70637 * 12 11 10 22 22 C 1.37623 * 119.74711 * 359.97438 * 21 12 11 23 23 C 1.50693 * 109.47459 * 179.11024 * 5 4 2 24 24 C 1.38238 * 119.99907 * 279.72921 * 23 5 4 25 25 C 1.38236 * 119.99886 * 179.78668 * 24 23 5 26 26 C 1.38235 * 119.99982 * 0.44033 * 25 24 23 27 27 C 1.38232 * 120.00128 * 359.81159 * 26 25 24 28 28 C 1.38237 * 120.00048 * 100.00060 * 23 5 4 29 29 H 1.09003 * 109.47338 * 59.99868 * 1 2 3 30 30 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46929 * 300.00592 * 1 2 3 32 32 H 1.08999 * 109.47039 * 119.99715 * 2 1 3 33 33 H 1.08999 * 109.46856 * 299.99827 * 3 2 1 34 34 H 1.08999 * 109.47159 * 59.99588 * 3 2 1 35 35 H 1.09002 * 109.47197 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47389 * 307.35911 * 4 2 1 37 37 H 1.08999 * 109.47252 * 67.35667 * 4 2 1 38 38 H 1.00898 * 110.99615 * 23.35969 * 7 5 4 39 39 H 1.09003 * 109.47353 * 295.63215 * 8 7 5 40 40 H 1.09002 * 109.47299 * 55.63384 * 8 7 5 41 41 H 1.08007 * 119.87746 * 359.97438 * 10 9 8 42 42 H 1.08006 * 120.12825 * 180.28013 * 11 10 9 43 43 H 0.97001 * 120.00327 * 179.97438 * 16 15 13 44 44 H 1.07994 * 120.12919 * 179.97438 * 21 12 11 45 45 H 1.07990 * 119.87723 * 180.02562 * 22 21 12 46 46 H 1.08000 * 120.00401 * 359.97438 * 24 23 5 47 47 H 1.07999 * 120.00110 * 180.27534 * 25 24 23 48 48 H 1.08006 * 120.00063 * 179.83808 * 26 25 24 49 49 H 1.08000 * 120.00288 * 179.97438 * 27 26 25 50 50 H 1.07994 * 119.99787 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5587 -0.8833 -1.1604 6 1 4.0265 0.0998 -1.1080 7 7 3.8995 -1.6524 0.0440 8 6 4.3471 -0.7653 1.1260 9 6 4.5845 -1.5756 2.3742 10 6 3.5502 -1.7666 3.2773 11 6 3.7539 -2.5096 4.4177 12 6 5.0212 -3.0662 4.6712 13 6 5.2442 -3.8257 5.8427 14 1 6.0553 -4.5378 5.8784 15 6 4.4136 -3.6547 6.9560 16 7 3.7787 -2.5244 7.1310 17 14 4.2115 -5.0405 8.1923 18 1 5.1630 -4.8444 9.3155 19 1 2.8216 -5.0389 8.7149 20 1 4.4896 -6.3398 7.5292 21 6 6.0652 -2.8609 3.7502 22 6 5.8369 -2.1200 2.6132 23 6 4.0584 -1.6130 -2.3804 24 6 3.9558 -2.9897 -2.4527 25 6 4.4102 -3.6588 -3.5738 26 6 4.9754 -2.9520 -4.6187 27 6 5.0827 -1.5759 -4.5443 28 6 4.6245 -0.9064 -3.4250 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.5732 -1.7039 -1.3175 37 1 1.7881 -0.1372 -2.1344 38 1 3.1214 -2.2216 0.3416 39 1 5.2734 -0.2718 0.8316 40 1 3.5813 -0.0143 1.3204 41 1 2.5797 -1.3341 3.0833 42 1 2.9455 -2.6609 5.1177 43 1 3.2027 -2.4059 7.9025 44 1 7.0418 -3.2832 3.9350 45 1 6.6364 -1.9615 1.9048 46 1 3.5180 -3.5423 -1.6346 47 1 4.3260 -4.7339 -3.6321 48 1 5.3328 -3.4750 -5.4936 49 1 5.5247 -1.0237 -5.3605 50 1 4.7082 0.1688 -3.3668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541327554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:12 Heat of formation + Delta-G solvation = 19.980412 kcal Electronic energy + Delta-G solvation = -26747.646972 eV Core-core repulsion = 23316.968151 eV Total energy + Delta-G solvation = -3430.678820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.67230 -38.04359 -37.17346 -34.49162 -33.60362 -31.85643 -30.81124 -29.73094 -29.22740 -28.02249 -27.27356 -25.86823 -23.81765 -23.05259 -22.22618 -21.01856 -20.66541 -20.00608 -19.51234 -17.28526 -16.86286 -16.07702 -15.36382 -15.33575 -15.15137 -14.56762 -14.22007 -14.12858 -13.83301 -13.66950 -13.47055 -13.24272 -13.14675 -12.77848 -12.56525 -12.37312 -12.29562 -12.11429 -11.92903 -11.80689 -11.58511 -11.43322 -11.28263 -11.04189 -10.98740 -10.93498 -10.73081 -10.66721 -10.55069 -10.41303 -10.29372 -9.53109 -9.38210 -9.04915 -8.82709 -8.59106 -7.98874 -7.42980 -7.31658 -6.83402 -4.32021 1.44579 1.50941 2.74864 3.05940 3.08805 3.11217 3.20673 3.86366 3.91882 4.41981 4.62900 4.74883 4.86200 4.91265 4.99227 5.03241 5.14773 5.24288 5.32982 5.40691 5.54839 5.61615 5.64513 5.67798 5.70948 5.77736 5.79837 5.84235 5.94765 5.95537 5.98382 6.08345 6.13516 6.17109 6.26575 6.32033 6.35577 6.45372 6.47827 6.53980 6.60794 6.75620 6.96571 7.06801 7.09519 7.27817 7.38474 7.46937 7.62609 7.77164 7.92675 8.06076 8.16478 8.31672 8.63875 8.89650 8.99549 10.12462 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002924 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.576280 B = 9573.043820 C =10727.408615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.149 4.149 4 C -0.131 4.131 5 C 0.120 3.880 6 H 0.079 0.921 7 N -0.674 5.674 8 C 0.119 3.881 9 C -0.219 4.219 10 C -0.090 4.090 11 C -0.173 4.173 12 C 0.116 3.884 13 C -0.466 4.466 14 H 0.078 0.922 15 C 0.082 3.918 16 N -0.783 5.783 17 Si 0.900 3.100 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.232 4.232 22 C -0.065 4.065 23 C -0.059 4.059 24 C -0.090 4.090 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.121 4.121 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.341 0.659 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.281 0.719 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 4.030 -16.942 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.206 4.206 4 C -0.170 4.170 5 C 0.010 3.990 6 H 0.097 0.903 7 N -0.305 5.305 8 C -0.009 4.009 9 C -0.220 4.220 10 C -0.109 4.109 11 C -0.193 4.193 12 C 0.113 3.887 13 C -0.495 4.495 14 H 0.096 0.904 15 C -0.137 4.137 16 N -0.407 5.407 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.251 4.251 22 C -0.084 4.084 23 C -0.060 4.060 24 C -0.108 4.108 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.142 0.858 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.052 4.039 -16.970 17.908 hybrid contribution -0.879 -0.175 0.929 1.291 sum -4.931 3.864 -16.041 17.220 Atomic orbital electron populations 1.21811 0.95270 1.01653 1.01467 1.21277 0.95739 0.96627 0.98857 1.21921 1.01321 0.95913 1.01472 1.22268 0.95722 1.00907 0.98098 1.20520 0.93355 0.95892 0.89270 0.90334 1.60715 1.41245 1.23996 1.04583 1.20780 0.98309 0.92958 0.88814 1.18864 0.95338 1.10385 0.97448 1.20465 0.96079 0.99255 0.95142 1.21129 0.97513 1.03442 0.97175 1.17581 0.90569 0.88961 0.91592 1.19576 1.13116 1.20072 0.96736 0.90390 1.25910 0.93716 0.95430 0.98692 1.69878 1.21760 1.22437 1.26669 0.86434 0.78414 0.82593 0.80136 1.19566 1.20001 1.18283 1.20937 0.97912 1.07760 0.98516 1.20342 0.95178 0.97005 0.95827 1.19920 0.97396 0.94053 0.94653 1.20987 0.98784 0.93991 0.97076 1.21162 0.99272 0.99722 0.94105 1.21066 1.00552 0.94370 0.98853 1.21024 1.00695 0.94565 0.98047 1.20984 0.99509 0.99529 0.93938 0.93041 0.92739 0.92691 0.90143 0.93000 0.92671 0.92326 0.91543 0.91707 0.83965 0.92402 0.94981 0.90064 0.87270 0.90840 0.89233 0.89571 0.85825 0.86461 0.86696 0.86620 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.11 -1.20 2.36 -90.62 -0.21 -1.41 16 3 C -0.15 -1.60 8.30 37.16 0.31 -1.29 16 4 C -0.13 -1.43 3.99 -26.73 -0.11 -1.54 16 5 C 0.12 1.49 2.26 -68.86 -0.16 1.33 16 6 H 0.08 0.98 6.05 -51.93 -0.31 0.67 16 7 N -0.67 -10.08 5.31 -109.22 -0.58 -10.66 16 8 C 0.12 1.99 4.83 -4.98 -0.02 1.97 16 9 C -0.22 -4.60 5.37 -104.33 -0.56 -5.16 16 10 C -0.09 -2.03 9.67 -39.66 -0.38 -2.42 16 11 C -0.17 -4.43 8.74 -38.87 -0.34 -4.77 16 12 C 0.12 3.07 5.58 -106.83 -0.60 2.48 16 13 C -0.47 -12.39 9.01 -37.74 -0.34 -12.73 16 14 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 15 C 0.08 2.05 4.98 -17.34 -0.09 1.96 16 16 N -0.78 -20.11 11.29 55.55 0.63 -19.49 16 17 Si 0.90 18.50 29.63 -169.99 -5.04 13.46 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 22 C -0.06 -1.46 9.67 -39.66 -0.38 -1.84 16 23 C -0.06 -0.75 4.96 -104.63 -0.52 -1.27 16 24 C -0.09 -1.16 9.33 -39.58 -0.37 -1.53 16 25 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 28 C -0.12 -1.40 9.67 -39.58 -0.38 -1.78 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.07 5.43 -51.93 -0.28 0.79 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.66 5.65 -51.93 -0.29 0.36 16 36 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.34 5.20 7.69 -39.29 -0.30 4.90 16 39 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.03 0.51 4.35 -51.93 -0.23 0.28 16 41 H 0.08 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.11 2.89 6.29 -52.48 -0.33 2.56 16 43 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 44 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 46 H 0.12 1.61 7.71 -52.49 -0.40 1.20 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 48 H 0.11 0.98 8.06 -52.48 -0.42 0.56 16 49 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 50 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -26.92 396.23 -12.44 -39.36 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.04 Total: 12.00 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: -5.38 Total: -40.65 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.05 Total: -30.15 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.04 Total: 13.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -26.92 -12.44 -39.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541327554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.341 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds