Wall clock time and date at job start Tue Mar 31 2020 13:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53001 * 109.46972 * 239.99708 * 2 1 3 5 5 C 1.52998 * 109.47214 * 187.35571 * 4 2 1 6 6 H 1.08998 * 109.47238 * 299.11665 * 5 4 2 7 7 N 1.46909 * 109.46912 * 59.10966 * 5 4 2 8 8 C 1.46897 * 110.99981 * 259.40143 * 7 5 4 9 9 C 1.50696 * 109.47144 * 175.63596 * 8 7 5 10 10 C 1.38636 * 119.74728 * 269.72802 * 9 8 7 11 11 C 1.37619 * 120.24817 * 179.72045 * 10 9 8 12 12 C 1.40715 * 119.74709 * 0.56923 * 11 10 9 13 13 C 1.41393 * 120.24981 * 179.68173 * 12 11 10 14 14 H 1.07997 * 120.00096 * 157.53347 * 13 12 11 15 15 C 1.39948 * 119.99724 * 337.54022 * 13 12 11 16 16 N 1.30822 * 119.99908 * 335.00788 * 15 13 12 17 17 Si 1.86800 * 120.00258 * 155.01274 * 15 13 12 18 18 H 1.48499 * 109.46936 * 94.98149 * 17 15 13 19 19 H 1.48492 * 109.47339 * 214.98694 * 17 15 13 20 20 H 1.48503 * 109.46998 * 334.98555 * 17 15 13 21 21 C 1.40716 * 119.50826 * 359.70637 * 12 11 10 22 22 C 1.37623 * 119.74711 * 359.97438 * 21 12 11 23 23 C 1.50693 * 109.47459 * 179.11024 * 5 4 2 24 24 C 1.38238 * 119.99907 * 279.72921 * 23 5 4 25 25 C 1.38236 * 119.99886 * 179.78668 * 24 23 5 26 26 C 1.38235 * 119.99982 * 0.44033 * 25 24 23 27 27 C 1.38232 * 120.00128 * 359.81159 * 26 25 24 28 28 C 1.38237 * 120.00048 * 100.00060 * 23 5 4 29 29 H 1.09003 * 109.47338 * 59.99868 * 1 2 3 30 30 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46929 * 300.00592 * 1 2 3 32 32 H 1.08999 * 109.47039 * 119.99715 * 2 1 3 33 33 H 1.08999 * 109.46856 * 299.99827 * 3 2 1 34 34 H 1.08999 * 109.47159 * 59.99588 * 3 2 1 35 35 H 1.09002 * 109.47197 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47389 * 307.35911 * 4 2 1 37 37 H 1.08999 * 109.47252 * 67.35667 * 4 2 1 38 38 H 1.00898 * 110.99615 * 23.35969 * 7 5 4 39 39 H 1.09003 * 109.47353 * 295.63215 * 8 7 5 40 40 H 1.09002 * 109.47299 * 55.63384 * 8 7 5 41 41 H 1.08007 * 119.87746 * 359.97438 * 10 9 8 42 42 H 1.08006 * 120.12825 * 180.28013 * 11 10 9 43 43 H 0.97001 * 120.00327 * 179.97438 * 16 15 13 44 44 H 1.07994 * 120.12919 * 179.97438 * 21 12 11 45 45 H 1.07990 * 119.87723 * 180.02562 * 22 21 12 46 46 H 1.08000 * 120.00401 * 359.97438 * 24 23 5 47 47 H 1.07999 * 120.00110 * 180.27534 * 25 24 23 48 48 H 1.08006 * 120.00063 * 179.83808 * 26 25 24 49 49 H 1.08000 * 120.00288 * 179.97438 * 27 26 25 50 50 H 1.07994 * 119.99787 * 359.97438 * 28 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5587 -0.8833 -1.1604 6 1 4.0265 0.0998 -1.1080 7 7 3.8995 -1.6524 0.0440 8 6 4.3471 -0.7653 1.1260 9 6 4.5845 -1.5756 2.3742 10 6 3.5502 -1.7666 3.2773 11 6 3.7539 -2.5096 4.4177 12 6 5.0212 -3.0662 4.6712 13 6 5.2442 -3.8257 5.8427 14 1 6.0553 -4.5378 5.8784 15 6 4.4136 -3.6547 6.9560 16 7 3.7787 -2.5244 7.1310 17 14 4.2115 -5.0405 8.1923 18 1 5.1630 -4.8444 9.3155 19 1 2.8216 -5.0389 8.7149 20 1 4.4896 -6.3398 7.5292 21 6 6.0652 -2.8609 3.7502 22 6 5.8369 -2.1200 2.6132 23 6 4.0584 -1.6130 -2.3804 24 6 3.9558 -2.9897 -2.4527 25 6 4.4102 -3.6588 -3.5738 26 6 4.9754 -2.9520 -4.6187 27 6 5.0827 -1.5759 -4.5443 28 6 4.6245 -0.9064 -3.4250 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.5732 -1.7039 -1.3175 37 1 1.7881 -0.1372 -2.1344 38 1 3.1214 -2.2216 0.3416 39 1 5.2734 -0.2718 0.8316 40 1 3.5813 -0.0143 1.3204 41 1 2.5797 -1.3341 3.0833 42 1 2.9455 -2.6609 5.1177 43 1 3.2027 -2.4059 7.9025 44 1 7.0418 -3.2832 3.9350 45 1 6.6364 -1.9615 1.9048 46 1 3.5180 -3.5423 -1.6346 47 1 4.3260 -4.7339 -3.6321 48 1 5.3328 -3.4750 -5.4936 49 1 5.5247 -1.0237 -5.3605 50 1 4.7082 0.1688 -3.3668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541327554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:11 Heat of formation + Delta-G solvation = 10.015779 kcal Electronic energy + Delta-G solvation = -26748.079071 eV Core-core repulsion = 23316.968151 eV Total energy + Delta-G solvation = -3431.110919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.64795 -39.51355 -38.45159 -35.96015 -35.01385 -33.16708 -31.69058 -31.27024 -31.04268 -29.16566 -28.10537 -27.44032 -24.99360 -24.33424 -23.20202 -22.87510 -21.64135 -21.58513 -20.56665 -19.20832 -17.80919 -17.28937 -16.90367 -16.38446 -16.30534 -15.85013 -15.57559 -15.40513 -15.10939 -14.93669 -14.81225 -14.37663 -14.11358 -14.06697 -13.79326 -13.65635 -13.50584 -13.39946 -13.16096 -13.08692 -12.94516 -12.73780 -12.62745 -12.46948 -12.36245 -12.15398 -12.01463 -11.82586 -11.61669 -11.50974 -11.45269 -11.28823 -11.11598 -10.92193 -9.69908 -9.51852 -9.36004 -9.24643 -9.08229 -8.69815 -6.29499 0.56924 0.63430 0.97201 1.17831 1.36920 1.47039 1.54951 2.19929 2.66455 2.98007 3.43906 3.75444 3.84216 3.94975 4.00425 4.14345 4.21614 4.28963 4.32613 4.35038 4.41287 4.47105 4.51763 4.64155 4.68690 4.75495 4.77109 4.80561 4.82580 4.86227 4.93377 4.99014 5.05719 5.07575 5.08658 5.17056 5.22700 5.28065 5.32882 5.38026 5.44532 5.46993 5.51566 5.68561 5.72652 5.73895 5.81081 5.99762 6.11126 6.22937 6.25908 6.34793 6.41941 6.57551 6.71541 6.95123 7.06591 8.28727 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002924 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.576280 B = 9573.043820 C =10727.408615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.148 4.148 4 C -0.122 4.122 5 C 0.127 3.873 6 H 0.082 0.918 7 N -0.679 5.679 8 C 0.129 3.871 9 C -0.202 4.202 10 C -0.090 4.090 11 C -0.196 4.196 12 C 0.084 3.916 13 C -0.508 4.508 14 H 0.072 0.928 15 C 0.043 3.957 16 N -0.816 5.816 17 Si 0.975 3.025 18 H -0.261 1.261 19 H -0.264 1.264 20 H -0.260 1.260 21 C -0.250 4.250 22 C -0.070 4.070 23 C -0.074 4.074 24 C -0.110 4.110 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.129 4.129 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.338 0.662 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.289 0.711 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.129 0.871 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 4.740 -18.965 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.205 4.205 4 C -0.160 4.160 5 C 0.017 3.983 6 H 0.100 0.900 7 N -0.310 5.310 8 C 0.001 3.999 9 C -0.203 4.203 10 C -0.108 4.108 11 C -0.215 4.215 12 C 0.082 3.918 13 C -0.537 4.537 14 H 0.090 0.910 15 C -0.174 4.174 16 N -0.441 5.441 17 Si 0.795 3.205 18 H -0.186 1.186 19 H -0.188 1.188 20 H -0.184 1.184 21 C -0.269 4.269 22 C -0.089 4.089 23 C -0.075 4.075 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.152 4.152 27 C -0.145 4.145 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.157 0.843 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.124 0.876 46 H 0.131 0.869 47 H 0.147 0.853 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.456 4.760 -19.011 20.098 hybrid contribution -0.731 -0.315 1.360 1.575 sum -5.187 4.446 -17.651 18.927 Atomic orbital electron populations 1.21792 0.94463 1.01738 1.02032 1.21229 0.96440 0.96764 0.97892 1.21908 1.00925 0.95537 1.02117 1.22169 0.94548 1.00886 0.98432 1.20492 0.94339 0.95496 0.87945 0.90015 1.60607 1.41614 1.24077 1.04707 1.20656 0.99121 0.92640 0.87480 1.19299 0.94140 1.08550 0.98350 1.20701 0.97535 0.98343 0.94268 1.21112 0.96917 1.05183 0.98294 1.17904 0.91478 0.90001 0.92466 1.19788 1.14601 1.21262 0.98004 0.91008 1.26717 0.92835 0.97615 1.00206 1.69906 1.22390 1.24008 1.27769 0.85315 0.78883 0.78794 0.77478 1.18589 1.18815 1.18427 1.21114 0.97738 1.08705 0.99387 1.20622 0.96466 0.96403 0.95421 1.19980 0.98299 0.94065 0.95121 1.21037 0.99879 0.94394 0.97516 1.21393 0.99270 1.00581 0.94086 1.21397 0.99820 0.94727 0.99244 1.21375 0.99978 0.94786 0.98405 1.21229 0.99191 1.00448 0.93884 0.91732 0.92937 0.92872 0.92420 0.91475 0.92973 0.92866 0.91951 0.90432 0.84266 0.91991 0.93637 0.87875 0.88927 0.90000 0.89225 0.87554 0.86912 0.85298 0.84415 0.84170 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 2 C -0.10 -2.17 2.36 -10.79 -0.03 -2.20 16 3 C -0.15 -2.84 8.30 71.98 0.60 -2.25 16 4 C -0.12 -2.44 3.99 30.59 0.12 -2.32 16 5 C 0.13 2.93 2.26 44.16 0.10 3.03 16 6 H 0.08 1.85 6.05 -2.39 -0.01 1.84 16 7 N -0.68 -19.53 5.31 -499.47 -2.65 -22.19 16 8 C 0.13 4.14 4.83 85.56 0.41 4.55 16 9 C -0.20 -8.39 5.37 -19.68 -0.11 -8.50 16 10 C -0.09 -4.06 9.67 22.22 0.21 -3.84 16 11 C -0.20 -10.35 8.74 22.73 0.20 -10.15 16 12 C 0.08 4.65 5.58 -21.29 -0.12 4.53 16 13 C -0.51 -28.19 9.01 23.46 0.21 -27.98 16 14 H 0.07 3.90 7.96 -2.91 -0.02 3.87 16 15 C 0.04 2.19 4.98 85.26 0.42 2.62 16 16 N -0.82 -43.10 11.29 21.83 0.25 -42.85 16 17 Si 0.97 38.66 29.63 68.60 2.03 40.69 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 C -0.25 -12.76 9.80 22.73 0.22 -12.54 16 22 C -0.07 -3.17 9.67 22.22 0.21 -2.96 16 23 C -0.07 -1.75 4.96 -19.87 -0.10 -1.85 16 24 C -0.11 -2.74 9.33 22.27 0.21 -2.53 16 25 C -0.14 -2.96 10.05 22.27 0.22 -2.74 16 26 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 27 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 28 C -0.13 -2.67 9.67 22.27 0.22 -2.46 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.47 5.43 -2.39 -0.01 1.46 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.07 5.65 -2.39 -0.01 1.06 16 36 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.34 10.12 7.69 -89.70 -0.69 9.43 16 39 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 40 H 0.05 1.36 4.35 -2.39 -0.01 1.35 16 41 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.09 5.12 6.29 -2.91 -0.02 5.10 16 43 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 44 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.11 4.31 8.06 -2.92 -0.02 4.28 16 46 H 0.11 2.95 7.71 -2.91 -0.02 2.93 16 47 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 48 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 49 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 50 H 0.13 2.22 8.04 -2.91 -0.02 2.20 16 Total: -1.00 -59.57 396.23 3.98 -55.59 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: 0.23 Total: 42.82 kcal Atomic # 6 Polarization: -78.20 SS G_CDS: 4.13 Total: -74.07 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -2.41 Total: -65.04 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -59.57 3.98 -55.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541327554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.607 kcal (2) G-P(sol) polarization free energy of solvation -59.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds