Wall clock time and date at job start Tue Mar 31 2020 13:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99981 * 2 1 4 4 N 1.46895 * 109.47145 * 124.07298 * 3 2 1 5 5 C 1.46903 * 110.99665 * 300.54540 * 4 3 2 6 6 C 1.50699 * 109.47350 * 288.42084 * 5 4 3 7 7 H 1.08004 * 119.99477 * 356.26098 * 6 5 4 8 8 C 1.37875 * 120.00388 * 176.26211 * 6 5 4 9 9 N 1.31513 * 120.00064 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99982 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.46932 * 89.99851 * 10 8 6 12 12 H 1.48495 * 109.47204 * 210.00537 * 10 8 6 13 13 H 1.48509 * 109.46720 * 330.00184 * 10 8 6 14 14 C 1.46898 * 111.00631 * 64.49735 * 4 3 2 15 15 N 1.46505 * 109.46938 * 81.04658 * 14 4 3 16 16 C 1.33784 * 124.17767 * 89.97729 * 15 14 4 17 17 O 1.21539 * 123.77439 * 0.03746 * 16 15 14 18 18 N 1.34522 * 112.46121 * 180.30568 * 16 15 14 19 19 C 1.47317 * 106.61839 * 359.58552 * 18 16 15 20 20 C 1.53002 * 110.52957 * 118.87371 * 19 18 16 21 21 C 1.53004 * 109.47207 * 310.16880 * 20 19 18 22 22 C 1.52989 * 110.80115 * 241.76033 * 19 18 16 23 23 C 1.53001 * 109.47202 * 59.99128 * 22 19 18 24 24 C 1.53009 * 109.47276 * 179.97438 * 22 19 18 25 25 C 1.34770 * 124.17661 * 270.02302 * 15 14 4 26 26 O 1.21238 * 127.15750 * 359.97438 * 25 15 14 27 27 H 1.08004 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00122 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99781 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47186 * 4.06983 * 3 2 1 31 31 H 1.09009 * 109.46847 * 244.06888 * 3 2 1 32 32 H 1.08995 * 109.47687 * 48.42188 * 5 4 3 33 33 H 1.09006 * 109.47112 * 168.42516 * 5 4 3 34 34 H 0.96998 * 119.99671 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46795 * 321.05050 * 14 4 3 36 36 H 1.08998 * 109.47421 * 201.04559 * 14 4 3 37 37 H 0.97003 * 126.69482 * 179.70905 * 18 16 15 38 38 H 1.08993 * 109.46782 * 70.17183 * 20 19 18 39 39 H 1.09001 * 109.46715 * 190.17266 * 20 19 18 40 40 H 1.09001 * 109.46967 * 60.00541 * 21 20 19 41 41 H 1.08999 * 109.46784 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47018 * 300.00076 * 21 20 19 43 43 H 1.08995 * 109.47426 * 299.98628 * 22 19 18 44 44 H 1.08997 * 109.47743 * 59.99783 * 23 22 19 45 45 H 1.09009 * 109.47205 * 180.02562 * 23 22 19 46 46 H 1.09005 * 109.46725 * 299.99314 * 23 22 19 47 47 H 1.08996 * 109.46400 * 59.99991 * 24 22 19 48 48 H 1.08995 * 109.47289 * 179.97438 * 24 22 19 49 49 H 1.08995 * 109.46988 * 300.00384 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9803 1.3412 1.1472 5 6 2.2456 1.2091 2.4125 6 6 1.4762 2.4767 2.6813 7 1 1.5750 3.3201 2.0139 8 6 0.6461 2.5597 3.7791 9 7 -0.0257 3.6657 4.0133 10 14 0.4759 1.1011 4.9336 11 1 1.4960 1.1989 6.0083 12 1 -0.8809 1.1033 5.5371 13 1 0.6773 -0.1584 4.1730 14 6 4.0140 0.3043 1.0280 15 7 5.0747 0.7729 0.1327 16 6 6.1555 1.4495 0.5376 17 8 6.3717 1.7470 1.6960 18 7 6.9735 1.7689 -0.4815 19 6 6.3556 1.2261 -1.7038 20 6 6.0329 2.3526 -2.6876 21 6 5.2707 3.4622 -1.9603 22 6 7.2678 0.1869 -2.3583 23 6 7.5166 -0.9622 -1.3792 24 6 6.5977 -0.3564 -3.6220 25 6 5.0819 0.5764 -1.2006 26 8 4.2438 0.0000 -1.8603 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3575 2.1323 0.0729 31 1 2.6344 1.3950 -0.9243 32 1 1.5524 0.3708 2.3444 33 1 2.9504 1.0327 3.2251 34 1 -0.6100 3.7239 4.7854 35 1 3.5711 -0.6051 0.6219 36 1 4.4346 0.0958 2.0117 37 1 7.8084 2.2592 -0.4228 38 1 6.9599 2.7555 -3.0952 39 1 5.4188 1.9615 -3.4988 40 1 5.8848 3.8532 -1.1490 41 1 5.0412 4.2648 -2.6611 42 1 4.3437 3.0591 -1.5526 43 1 8.2178 0.6518 -2.6218 44 1 6.5667 -1.4272 -1.1156 45 1 8.1670 -1.7025 -1.8454 46 1 7.9940 -0.5754 -0.4788 47 1 6.4203 0.4622 -4.3195 48 1 7.2478 -1.0964 -4.0885 49 1 5.6478 -0.8213 -3.3583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793565332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:02 Heat of formation + Delta-G solvation = -12.307567 kcal Electronic energy + Delta-G solvation = -30162.096164 eV Core-core repulsion = 26319.167969 eV Total energy + Delta-G solvation = -3842.928195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68150 -38.57765 -38.01276 -36.76889 -35.20611 -33.64760 -32.78038 -32.46135 -31.65377 -28.15702 -27.48559 -26.95502 -26.37519 -23.98439 -23.30784 -21.94302 -21.30997 -20.87909 -19.74472 -18.93885 -17.76430 -17.13163 -16.72924 -16.11117 -15.78619 -15.33836 -15.11574 -15.01434 -14.83943 -14.39692 -14.16634 -14.06384 -13.85886 -13.77202 -13.46518 -13.15062 -12.74146 -12.48797 -12.35790 -12.34146 -11.90186 -11.83572 -11.70692 -11.44081 -11.38525 -11.30774 -11.13717 -11.01206 -10.86881 -10.72444 -10.50780 -10.44165 -10.01058 -9.82701 -9.58314 -9.39039 -9.34845 -8.81410 -8.53428 -7.55702 -6.02460 -3.99268 1.75202 2.35861 2.80593 3.14561 3.26786 3.31186 3.37985 3.39210 3.87028 4.15249 4.39482 4.44344 4.71182 4.78029 4.91530 5.03098 5.03942 5.11260 5.28775 5.29612 5.35741 5.43582 5.45093 5.50471 5.57123 5.60906 5.69153 5.71246 5.76050 5.79110 5.80997 5.91545 5.93068 6.04347 6.09684 6.22262 6.36862 6.55565 6.75673 6.84489 6.92353 7.11341 7.23834 7.27791 7.49437 7.57436 7.80322 7.90033 8.33905 8.65137 9.06069 9.58848 11.10731 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.004181 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.419079 B = 6694.775904 C = 7039.903866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.089 3.911 4 N -0.528 5.528 5 C 0.165 3.835 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.274 3.726 15 N -0.561 5.561 16 C 0.708 3.292 17 O -0.532 6.532 18 N -0.724 5.724 19 C 0.124 3.876 20 C -0.116 4.116 21 C -0.159 4.159 22 C -0.084 4.084 23 C -0.155 4.155 24 C -0.157 4.157 25 C 0.537 3.463 26 O -0.467 6.467 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.005 0.995 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.434 0.566 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.208 -8.080 -16.392 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.200 4.200 3 C -0.038 4.038 4 N -0.252 5.252 5 C 0.040 3.960 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.539 5.539 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.063 3.937 15 N -0.308 5.308 16 C 0.409 3.591 17 O -0.404 6.404 18 N -0.389 5.389 19 C 0.033 3.967 20 C -0.154 4.154 21 C -0.216 4.216 22 C -0.104 4.104 23 C -0.212 4.212 24 C -0.215 4.215 25 C 0.323 3.677 26 O -0.337 6.337 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.278 0.722 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.864 -7.729 -15.867 23.074 hybrid contribution -0.200 -1.207 0.841 1.485 sum 14.664 -8.936 -15.025 22.818 Atomic orbital electron populations 1.23767 0.95965 1.01428 1.00307 1.23448 0.96721 0.99453 1.00386 1.21326 0.94808 0.94973 0.92718 1.61857 1.13822 1.44995 1.04512 1.20234 0.92614 0.98133 0.85043 1.20906 1.23751 0.98607 1.10759 0.90235 1.24832 0.95311 0.95574 0.97304 1.69885 1.28956 1.26288 1.28769 0.86937 0.77623 0.83935 0.81772 1.20133 1.21212 1.19132 1.22144 0.85600 0.92290 0.93662 1.46619 1.22006 1.52411 1.09767 1.15826 0.79986 0.78139 0.85187 1.91031 1.75614 1.57080 1.16706 1.45585 1.26240 1.60985 1.06071 1.21609 0.92039 0.95356 0.87701 1.21790 1.02044 0.94357 0.97249 1.21828 1.00856 0.98161 1.00790 1.21274 0.98271 0.94732 0.96109 1.21925 1.02173 0.97864 0.99268 1.21998 1.01970 1.01519 0.95966 1.20600 0.86758 0.78237 0.82101 1.90752 1.41421 1.39841 1.61640 0.88073 0.89522 0.88599 0.89083 0.91687 0.97750 0.95734 0.92703 0.91187 0.88080 0.72180 0.90082 0.89405 0.91927 0.91805 0.92177 0.89373 0.92711 0.91608 0.92097 0.91890 0.92091 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 14.32 29.01 0.42 -2.65 16 2 C -0.18 -3.25 7.40 -36.02 -0.27 -3.52 16 3 C 0.09 1.74 5.62 -4.98 -0.03 1.71 16 4 N -0.53 -11.11 4.76 -241.43 -1.15 -12.26 16 5 C 0.17 4.00 3.65 -4.97 -0.02 3.98 16 6 C -0.50 -14.25 9.10 -34.44 -0.31 -14.56 16 7 H 0.08 2.48 7.84 -52.48 -0.41 2.07 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 10 Si 0.87 21.63 27.54 -169.99 -4.68 16.95 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.34 6.44 56.52 0.36 -5.98 16 14 C 0.27 4.88 5.40 -63.31 -0.34 4.54 16 15 N -0.56 -8.82 2.82 -124.03 -0.35 -9.17 16 16 C 0.71 11.12 8.45 -88.03 -0.74 10.37 16 17 O -0.53 -10.56 17.48 5.33 0.09 -10.46 16 18 N -0.72 -7.83 4.15 -52.94 -0.22 -8.05 16 19 C 0.12 1.24 0.59 -132.09 -0.08 1.17 16 20 C -0.12 -1.02 4.67 -26.73 -0.12 -1.14 16 21 C -0.16 -1.78 9.37 37.16 0.35 -1.43 16 22 C -0.08 -0.65 2.59 -90.62 -0.23 -0.89 16 23 C -0.15 -1.33 8.68 37.16 0.32 -1.01 16 24 C -0.16 -1.19 8.58 37.16 0.32 -0.87 16 25 C 0.54 7.35 3.57 -10.55 -0.04 7.31 16 26 O -0.47 -7.07 14.60 5.59 0.08 -6.98 16 27 H 0.10 1.83 7.84 -52.48 -0.41 1.42 16 28 H 0.09 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.10 1.63 6.69 -52.48 -0.35 1.27 16 30 H 0.09 1.97 6.99 -51.93 -0.36 1.61 16 31 H 0.06 1.20 5.88 -51.92 -0.31 0.90 16 32 H 0.00 0.12 5.50 -51.93 -0.29 -0.17 16 33 H 0.02 0.61 7.27 -51.93 -0.38 0.23 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 1.16 5.89 -51.93 -0.31 0.85 16 36 H 0.10 1.83 7.27 -51.93 -0.38 1.46 16 37 H 0.43 3.55 8.96 -40.82 -0.37 3.18 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.76 6.90 -51.93 -0.36 0.40 16 40 H 0.06 0.74 7.42 -51.93 -0.39 0.35 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.86 7.42 -51.93 -0.39 0.47 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.57 7.12 -51.93 -0.37 0.20 16 45 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.06 0.55 7.67 -51.93 -0.40 0.16 16 47 H 0.06 0.42 6.63 -51.93 -0.34 0.07 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.75 6.16 -51.93 -0.32 0.43 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -33.33 379.92 -8.43 -41.76 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.82 Total: 4.40 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.88 Total: 4.97 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.94 Total: -56.36 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.17 Total: -17.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.68 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.33 -8.43 -41.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793565332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.456 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds