Wall clock time and date at job start Tue Mar 31 2020 13:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99981 * 2 1 4 4 N 1.46895 * 109.47145 * 124.07298 * 3 2 1 5 5 C 1.46903 * 110.99665 * 300.54540 * 4 3 2 6 6 C 1.50699 * 109.47350 * 288.42084 * 5 4 3 7 7 H 1.08004 * 119.99477 * 356.26098 * 6 5 4 8 8 C 1.37875 * 120.00388 * 176.26211 * 6 5 4 9 9 N 1.31513 * 120.00064 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99982 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.46932 * 89.99851 * 10 8 6 12 12 H 1.48495 * 109.47204 * 210.00537 * 10 8 6 13 13 H 1.48509 * 109.46720 * 330.00184 * 10 8 6 14 14 C 1.46898 * 111.00631 * 64.49735 * 4 3 2 15 15 N 1.46505 * 109.46938 * 81.04658 * 14 4 3 16 16 C 1.33784 * 124.17767 * 89.97729 * 15 14 4 17 17 O 1.21539 * 123.77439 * 0.03746 * 16 15 14 18 18 N 1.34522 * 112.46121 * 180.30568 * 16 15 14 19 19 C 1.47317 * 106.61839 * 359.58552 * 18 16 15 20 20 C 1.53002 * 110.52957 * 118.87371 * 19 18 16 21 21 C 1.53004 * 109.47207 * 310.16880 * 20 19 18 22 22 C 1.52989 * 110.80115 * 241.76033 * 19 18 16 23 23 C 1.53001 * 109.47202 * 59.99128 * 22 19 18 24 24 C 1.53009 * 109.47276 * 179.97438 * 22 19 18 25 25 C 1.34770 * 124.17661 * 270.02302 * 15 14 4 26 26 O 1.21238 * 127.15750 * 359.97438 * 25 15 14 27 27 H 1.08004 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00122 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99781 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47186 * 4.06983 * 3 2 1 31 31 H 1.09009 * 109.46847 * 244.06888 * 3 2 1 32 32 H 1.08995 * 109.47687 * 48.42188 * 5 4 3 33 33 H 1.09006 * 109.47112 * 168.42516 * 5 4 3 34 34 H 0.96998 * 119.99671 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46795 * 321.05050 * 14 4 3 36 36 H 1.08998 * 109.47421 * 201.04559 * 14 4 3 37 37 H 0.97003 * 126.69482 * 179.70905 * 18 16 15 38 38 H 1.08993 * 109.46782 * 70.17183 * 20 19 18 39 39 H 1.09001 * 109.46715 * 190.17266 * 20 19 18 40 40 H 1.09001 * 109.46967 * 60.00541 * 21 20 19 41 41 H 1.08999 * 109.46784 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47018 * 300.00076 * 21 20 19 43 43 H 1.08995 * 109.47426 * 299.98628 * 22 19 18 44 44 H 1.08997 * 109.47743 * 59.99783 * 23 22 19 45 45 H 1.09009 * 109.47205 * 180.02562 * 23 22 19 46 46 H 1.09005 * 109.46725 * 299.99314 * 23 22 19 47 47 H 1.08996 * 109.46400 * 59.99991 * 24 22 19 48 48 H 1.08995 * 109.47289 * 179.97438 * 24 22 19 49 49 H 1.08995 * 109.46988 * 300.00384 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9803 1.3412 1.1472 5 6 2.2456 1.2091 2.4125 6 6 1.4762 2.4767 2.6813 7 1 1.5750 3.3201 2.0139 8 6 0.6461 2.5597 3.7791 9 7 -0.0257 3.6657 4.0133 10 14 0.4759 1.1011 4.9336 11 1 1.4960 1.1989 6.0083 12 1 -0.8809 1.1033 5.5371 13 1 0.6773 -0.1584 4.1730 14 6 4.0140 0.3043 1.0280 15 7 5.0747 0.7729 0.1327 16 6 6.1555 1.4495 0.5376 17 8 6.3717 1.7470 1.6960 18 7 6.9735 1.7689 -0.4815 19 6 6.3556 1.2261 -1.7038 20 6 6.0329 2.3526 -2.6876 21 6 5.2707 3.4622 -1.9603 22 6 7.2678 0.1869 -2.3583 23 6 7.5166 -0.9622 -1.3792 24 6 6.5977 -0.3564 -3.6220 25 6 5.0819 0.5764 -1.2006 26 8 4.2438 0.0000 -1.8603 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3575 2.1323 0.0729 31 1 2.6344 1.3950 -0.9243 32 1 1.5524 0.3708 2.3444 33 1 2.9504 1.0327 3.2251 34 1 -0.6100 3.7239 4.7854 35 1 3.5711 -0.6051 0.6219 36 1 4.4346 0.0958 2.0117 37 1 7.8084 2.2592 -0.4228 38 1 6.9599 2.7555 -3.0952 39 1 5.4188 1.9615 -3.4988 40 1 5.8848 3.8532 -1.1490 41 1 5.0412 4.2648 -2.6611 42 1 4.3437 3.0591 -1.5526 43 1 8.2178 0.6518 -2.6218 44 1 6.5667 -1.4272 -1.1156 45 1 8.1670 -1.7025 -1.8454 46 1 7.9940 -0.5754 -0.4788 47 1 6.4203 0.4622 -4.3195 48 1 7.2478 -1.0964 -4.0885 49 1 5.6478 -0.8213 -3.3583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793565332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:01 Heat of formation + Delta-G solvation = -36.062161 kcal Electronic energy + Delta-G solvation = -30163.126241 eV Core-core repulsion = 26319.167969 eV Total energy + Delta-G solvation = -3843.958272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.78079 -39.77217 -39.44168 -37.96656 -36.43347 -34.82532 -34.56804 -33.66423 -33.03682 -30.06962 -28.26213 -28.10880 -27.50007 -25.71454 -24.40901 -22.90740 -22.70920 -22.30492 -20.75251 -20.38157 -19.00036 -18.80714 -18.23031 -17.41911 -16.84510 -16.71820 -16.53222 -16.36949 -16.02212 -15.82507 -15.55614 -15.30974 -15.08917 -14.73837 -14.61126 -14.46824 -14.18948 -13.87091 -13.57369 -13.22656 -13.15424 -12.97154 -12.87970 -12.69766 -12.55963 -12.47762 -12.46451 -12.29413 -12.18060 -12.04437 -11.91873 -11.78916 -11.64935 -11.57705 -11.01117 -10.86339 -10.78049 -10.35095 -10.29836 -9.22876 -8.27948 -6.30628 0.64367 1.17633 1.33917 1.35074 1.36922 1.44999 2.02474 2.20948 2.33791 2.88832 3.05910 3.18336 3.33954 3.63647 3.77003 3.96131 4.07381 4.09364 4.21726 4.22858 4.24789 4.31800 4.38530 4.52928 4.56146 4.62007 4.68658 4.79095 4.80777 4.88385 4.91800 4.93842 4.97140 5.03116 5.06009 5.09024 5.16019 5.28378 5.30313 5.49968 5.50349 5.64432 5.72464 5.87781 5.95229 6.06458 6.22624 6.41589 6.54208 6.73061 7.18108 7.31731 8.88909 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.004181 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.419079 B = 6694.775904 C = 7039.903866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.190 4.190 3 C 0.100 3.900 4 N -0.547 5.547 5 C 0.179 3.821 6 C -0.507 4.507 7 H 0.032 0.968 8 C 0.014 3.986 9 N -0.947 5.947 10 Si 0.939 3.061 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.245 1.245 14 C 0.278 3.722 15 N -0.569 5.569 16 C 0.704 3.296 17 O -0.582 6.582 18 N -0.699 5.699 19 C 0.131 3.869 20 C -0.110 4.110 21 C -0.159 4.159 22 C -0.077 4.077 23 C -0.156 4.156 24 C -0.155 4.155 25 C 0.530 3.470 26 O -0.482 6.482 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.450 0.550 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.019 0.981 43 H 0.125 0.875 44 H 0.030 0.970 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.249 -10.177 -18.203 27.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.210 4.210 3 C -0.027 4.027 4 N -0.271 5.271 5 C 0.053 3.947 6 C -0.545 4.545 7 H 0.050 0.950 8 C -0.184 4.184 9 N -0.588 5.588 10 Si 0.763 3.237 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.169 1.169 14 C 0.066 3.934 15 N -0.315 5.315 16 C 0.404 3.596 17 O -0.458 6.458 18 N -0.364 5.364 19 C 0.041 3.959 20 C -0.148 4.148 21 C -0.216 4.216 22 C -0.096 4.096 23 C -0.213 4.213 24 C -0.213 4.213 25 C 0.318 3.682 26 O -0.352 6.352 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.297 0.703 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.143 0.857 44 H 0.049 0.951 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.952 -9.829 -17.760 26.446 hybrid contribution -0.831 -0.466 1.277 1.593 sum 16.120 -10.295 -16.483 25.250 Atomic orbital electron populations 1.23933 0.95841 1.02143 0.98974 1.23422 0.96994 0.99005 1.01543 1.21118 0.94220 0.94972 0.92433 1.61689 1.14492 1.47205 1.03689 1.19917 0.92342 0.95879 0.86590 1.21073 1.24424 0.99025 1.10009 0.94966 1.25731 0.94788 0.98715 0.99117 1.70041 1.30086 1.28856 1.29790 0.85829 0.77841 0.80650 0.79398 1.19467 1.20558 1.16862 1.22019 0.85173 0.91893 0.94307 1.46601 1.21597 1.52768 1.10569 1.15996 0.80361 0.77926 0.85277 1.90992 1.76754 1.59162 1.18887 1.45463 1.25912 1.59881 1.05136 1.21838 0.90450 0.96351 0.87308 1.21865 1.03741 0.92740 0.96441 1.21817 0.99201 0.99519 1.01093 1.21363 0.99018 0.93639 0.95594 1.21942 1.01248 0.98626 0.99468 1.21991 1.00962 1.02355 0.95980 1.21282 0.87888 0.77821 0.81166 1.90739 1.42387 1.40498 1.61621 0.89621 0.86543 0.86851 0.92462 0.90979 0.97022 0.95942 0.92471 0.89682 0.88715 0.70334 0.85903 0.88676 0.92812 0.90261 0.96143 0.85704 0.95101 0.89585 0.92805 0.90513 0.90272 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 14.32 67.78 0.97 -4.84 16 2 C -0.19 -6.77 7.40 25.65 0.19 -6.58 16 3 C 0.10 4.05 5.62 85.56 0.48 4.53 16 4 N -0.55 -23.78 4.76 -917.74 -4.37 -28.15 16 5 C 0.18 8.83 3.65 85.56 0.31 9.14 16 6 C -0.51 -30.07 9.10 25.60 0.23 -29.84 16 7 H 0.03 2.16 7.84 -2.91 -0.02 2.13 16 8 C 0.01 0.82 5.47 84.65 0.46 1.29 16 9 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 10 Si 0.94 44.80 27.54 68.60 1.89 46.69 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.25 -10.76 6.44 99.48 0.64 -10.12 16 14 C 0.28 10.02 5.40 170.81 0.92 10.95 16 15 N -0.57 -18.03 2.82 -783.55 -2.21 -20.23 16 16 C 0.70 22.19 8.45 179.44 1.52 23.71 16 17 O -0.58 -23.70 17.48 -3.84 -0.07 -23.77 16 18 N -0.70 -14.00 4.15 -439.83 -1.83 -15.82 16 19 C 0.13 2.32 0.59 2.98 0.00 2.33 16 20 C -0.11 -1.58 4.67 30.60 0.14 -1.44 16 21 C -0.16 -3.42 9.37 71.98 0.67 -2.75 16 22 C -0.08 -0.91 2.59 -10.79 -0.03 -0.94 16 23 C -0.16 -2.28 8.68 71.98 0.62 -1.66 16 24 C -0.16 -1.80 8.58 71.99 0.62 -1.19 16 25 C 0.53 14.16 3.57 87.94 0.31 14.47 16 26 O -0.48 -14.31 14.60 -2.90 -0.04 -14.35 16 27 H 0.09 3.17 7.84 -2.91 -0.02 3.14 16 28 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.11 3.66 6.69 -2.91 -0.02 3.64 16 30 H 0.06 2.67 6.99 -2.39 -0.02 2.65 16 31 H 0.07 2.77 5.88 -2.38 -0.01 2.76 16 32 H 0.01 0.58 5.50 -2.39 -0.01 0.56 16 33 H 0.02 1.12 7.27 -2.38 -0.02 1.10 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.09 2.78 5.89 -2.39 -0.01 2.77 16 36 H 0.09 3.51 7.27 -2.39 -0.02 3.49 16 37 H 0.45 6.25 8.96 -92.71 -0.83 5.42 16 38 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 1.34 6.90 -2.39 -0.02 1.32 16 40 H 0.05 1.23 7.42 -2.39 -0.02 1.21 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.02 0.58 7.42 -2.39 -0.02 0.57 16 43 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.03 0.60 7.12 -2.39 -0.02 0.58 16 45 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.05 0.87 7.67 -2.38 -0.02 0.85 16 47 H 0.08 0.69 6.63 -2.39 -0.02 0.67 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.05 0.85 6.16 -2.39 -0.01 0.84 16 Total: -1.00 -77.36 379.92 1.17 -76.19 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.06 Total: 22.20 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 7.43 Total: 17.18 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -8.10 Total: -124.15 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.11 Total: -38.12 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.89 Total: 46.69 kcal Total: -77.36 1.17 -76.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793565332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.132 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds