Wall clock time and date at job start Tue Mar 31 2020 14:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47396 * 2 1 4 4 C 1.53003 * 109.47239 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46943 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99494 * 274.81087 * 5 4 3 7 7 C 1.53002 * 109.47468 * 270.00247 * 6 5 4 8 8 O 1.42897 * 109.46915 * 65.00024 * 7 6 5 9 9 C 1.42900 * 113.99757 * 180.02562 * 8 7 6 10 10 C 1.34773 * 120.00456 * 94.81234 * 5 4 3 11 11 O 1.21601 * 120.00110 * 185.52719 * 10 5 4 12 12 C 1.47429 * 119.99763 * 5.80448 * 10 5 4 13 13 C 1.41290 * 126.41773 * 53.75501 * 12 10 5 14 14 N 1.30447 * 108.02486 * 179.87744 * 13 12 10 15 15 N 1.39938 * 108.89685 * 0.38605 * 14 13 12 16 16 C 1.46494 * 125.75562 * 179.75267 * 15 14 13 17 17 C 1.50707 * 109.46847 * 269.99754 * 16 15 14 18 18 H 1.07994 * 120.00246 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99734 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00119 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00117 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46908 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47441 * 119.99797 * 21 19 17 24 24 H 1.48498 * 109.47245 * 240.00100 * 21 19 17 25 25 C 1.34266 * 108.48794 * 359.74819 * 15 14 13 26 26 C 1.50699 * 126.28650 * 179.97438 * 25 15 14 27 27 H 1.08995 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46631 * 299.99818 * 1 2 3 29 29 H 1.08996 * 109.47458 * 59.99702 * 1 2 3 30 30 H 1.09007 * 109.46631 * 240.00182 * 2 1 3 31 31 H 1.08996 * 109.47458 * 120.00298 * 2 1 3 32 32 H 1.09000 * 109.46772 * 60.00279 * 3 2 1 33 33 H 1.09007 * 109.46731 * 300.00233 * 3 2 1 34 34 H 1.08990 * 109.47105 * 59.99710 * 4 3 2 35 35 H 1.09001 * 109.46370 * 299.99852 * 4 3 2 36 36 H 1.08998 * 109.47428 * 30.00304 * 6 5 4 37 37 H 1.09004 * 109.46765 * 150.00238 * 6 5 4 38 38 H 1.08994 * 109.47384 * 185.00435 * 7 6 5 39 39 H 1.09003 * 109.46703 * 305.00536 * 7 6 5 40 40 H 1.09000 * 109.47169 * 179.97438 * 9 8 7 41 41 H 1.08994 * 109.47316 * 299.99983 * 9 8 7 42 42 H 1.09005 * 109.47161 * 59.99831 * 9 8 7 43 43 H 1.08003 * 125.98476 * 0.03116 * 13 12 10 44 44 H 1.09005 * 109.47069 * 29.99299 * 16 15 14 45 45 H 1.08999 * 109.47535 * 149.99987 * 16 15 14 46 46 H 0.97003 * 119.99810 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.47785 * 270.02664 * 26 25 15 48 48 H 1.09001 * 109.47391 * 30.03326 * 26 25 15 49 49 H 1.09000 * 109.46785 * 150.02651 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2016 3.5504 -1.2640 7 6 5.6067 3.3243 -1.8259 8 8 5.7688 1.9450 -2.1625 9 6 7.0541 1.6248 -2.6987 10 6 4.3758 3.4257 1.1632 11 8 4.6846 4.6018 1.1746 12 6 4.3546 2.6569 2.4210 13 6 5.0342 1.4444 2.6744 14 7 4.7681 1.0808 3.8986 15 7 3.9110 2.0246 4.4755 16 6 3.3755 1.9746 5.8382 17 6 2.0688 1.2238 5.8372 18 1 1.6767 0.8236 4.9139 19 6 1.3745 1.0469 7.0151 20 7 1.8522 1.5339 8.1395 21 14 -0.2448 0.1157 7.0141 22 1 -0.5602 -0.3272 5.6322 23 1 -0.1343 -1.0706 7.9004 24 1 -1.3271 1.0041 7.5088 25 6 3.6622 2.9838 3.5695 26 6 2.7873 4.1944 3.7697 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9285 0.8892 36 1 3.4622 3.1873 -1.9777 37 1 4.0468 4.6153 -1.0903 38 1 5.7436 3.9346 -2.7185 39 1 6.3470 3.6050 -1.0768 40 1 7.0972 0.5601 -2.9278 41 1 7.2214 2.1999 -3.6093 42 1 7.8243 1.8702 -1.9674 43 1 5.6656 0.9131 1.9776 44 1 4.0863 1.4658 6.4895 45 1 3.2114 2.9890 6.2016 46 1 1.3638 1.4091 8.9683 47 1 1.7642 3.9554 3.4794 48 1 2.8080 4.4882 4.8191 49 1 3.1569 5.0153 3.1553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888891741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:36 Heat of formation + Delta-G solvation = -26.838128 kcal Electronic energy + Delta-G solvation = -28706.394304 eV Core-core repulsion = 24862.836016 eV Total energy + Delta-G solvation = -3843.558288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83096 -39.27623 -37.77600 -36.19485 -34.10189 -33.85294 -32.09842 -31.42934 -30.36841 -28.45185 -27.36599 -26.68374 -26.22819 -23.76315 -23.64581 -22.96516 -21.34488 -20.78726 -19.51788 -18.30592 -17.13488 -16.73059 -16.61765 -16.19841 -15.71896 -15.50176 -15.13779 -14.99162 -14.57738 -14.34465 -14.19600 -13.76226 -13.47719 -13.23192 -12.94537 -12.70008 -12.57173 -12.50228 -12.32211 -12.14109 -12.02432 -11.97806 -11.70606 -11.48285 -11.34453 -11.24738 -11.11607 -11.06605 -10.93795 -10.90085 -10.45611 -10.36403 -10.18536 -9.87251 -9.86628 -9.37732 -8.70680 -8.53190 -8.48167 -7.77176 -6.32459 -4.40038 2.39307 2.85512 3.10154 3.16500 3.24743 3.28818 3.44800 3.61626 3.64810 4.24580 4.85229 4.90437 4.97860 5.02685 5.06289 5.07714 5.18289 5.20533 5.22315 5.25537 5.28349 5.39304 5.44446 5.52082 5.66700 5.68946 5.74851 5.77086 5.78904 5.86349 5.90749 6.02197 6.05324 6.08603 6.22920 6.33098 6.34575 6.43911 6.52548 6.75233 6.84953 6.94376 6.96982 7.22795 7.58473 7.65914 7.79452 7.84334 8.44929 8.55686 8.66198 9.26666 10.75695 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.003754 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.368003 B = 7456.342434 C = 8462.978166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.110 3.890 5 N -0.605 5.605 6 C 0.120 3.880 7 C 0.045 3.955 8 O -0.386 6.386 9 C 0.032 3.968 10 C 0.609 3.391 11 O -0.553 6.553 12 C -0.321 4.321 13 C 0.057 3.943 14 N -0.294 5.294 15 N -0.313 5.313 16 C 0.252 3.748 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.066 3.934 20 N -0.890 5.890 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.146 3.854 26 C -0.094 4.094 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.175 0.825 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.268 0.732 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 1.247 -20.043 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.013 4.013 5 N -0.337 5.337 6 C -0.003 4.003 7 C -0.033 4.033 8 O -0.305 6.305 9 C -0.064 4.064 10 C 0.399 3.601 11 O -0.431 6.431 12 C -0.337 4.337 13 C -0.129 4.129 14 N -0.115 5.115 15 N -0.090 5.090 16 C 0.134 3.866 17 C -0.575 4.575 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.010 3.990 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.191 0.809 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.473 0.839 -18.715 19.053 hybrid contribution -0.696 0.094 -0.565 0.901 sum 2.778 0.933 -19.280 19.501 Atomic orbital electron populations 1.21747 0.95938 1.01432 1.01715 1.21424 0.95884 0.96492 1.02090 1.21978 0.95885 0.97129 1.02232 1.21759 0.93523 0.82066 1.03982 1.47735 1.65804 1.14758 1.05371 1.21420 0.95040 0.98495 0.85382 1.23056 0.98722 0.82825 0.98707 1.87882 1.33222 1.25940 1.83483 1.22710 0.85310 1.01308 0.97115 1.17530 0.74586 0.85554 0.82444 1.90692 1.49065 1.16443 1.86932 1.19564 1.15691 1.02754 0.95661 1.23592 1.00408 0.94250 0.94673 1.77130 1.11102 1.14021 1.09216 1.49245 1.32150 1.14329 1.13294 1.19817 0.94949 0.99499 0.72297 1.21284 1.04621 1.36537 0.95058 0.91590 1.24926 0.98463 0.95414 0.94924 1.69928 1.39195 1.44681 0.98919 0.86297 0.82424 0.79522 0.78451 1.19496 1.20594 1.20616 1.21246 0.96510 0.92536 0.88672 1.20489 0.97977 0.93017 1.03723 0.92924 0.92554 0.93090 0.92160 0.91595 0.91594 0.92309 0.90065 0.89243 0.89980 0.88381 0.92699 0.92771 0.89762 0.94388 0.94164 0.80854 0.92619 0.92743 0.92212 0.90174 0.90360 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.13 -1.63 5.54 -26.73 -0.15 -1.78 16 4 C 0.11 1.38 5.20 -4.04 -0.02 1.35 16 5 N -0.60 -8.24 2.44 -174.96 -0.43 -8.67 16 6 C 0.12 1.33 5.88 -4.04 -0.02 1.31 16 7 C 0.04 0.46 6.28 37.16 0.23 0.69 16 8 O -0.39 -4.13 9.46 -35.23 -0.33 -4.47 16 9 C 0.03 0.26 11.01 101.05 1.11 1.37 16 10 C 0.61 10.40 7.24 -12.52 -0.09 10.31 16 11 O -0.55 -10.68 15.93 5.28 0.08 -10.60 16 12 C -0.32 -5.97 5.03 -105.07 -0.53 -6.50 16 13 C 0.06 1.03 9.88 -16.98 -0.17 0.87 16 14 N -0.29 -6.40 12.50 30.86 0.39 -6.01 16 15 N -0.31 -7.06 3.56 -57.77 -0.21 -7.27 16 16 C 0.25 6.26 5.97 -5.19 -0.03 6.23 16 17 C -0.54 -14.26 9.39 -34.44 -0.32 -14.59 16 18 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -24.53 13.29 55.43 0.74 -23.80 16 21 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.15 2.96 7.01 -81.60 -0.57 2.39 16 26 C -0.09 -1.65 9.93 36.01 0.36 -1.30 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.08 0.93 7.04 -51.93 -0.37 0.56 16 35 H 0.09 1.26 4.64 -51.93 -0.24 1.02 16 36 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.10 1.13 7.35 -51.93 -0.38 0.74 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.17 2.57 7.78 -52.48 -0.41 2.16 16 44 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.05 1.35 7.02 -51.93 -0.36 0.99 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 48 H 0.08 1.37 7.05 -51.93 -0.37 1.01 16 49 H 0.08 1.40 7.30 -51.93 -0.38 1.03 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -30.49 404.04 -7.17 -37.66 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.39 Total: 2.33 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.09 Total: -0.84 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.49 Total: -45.74 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.25 Total: -15.07 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.49 -7.17 -37.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888891741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.827 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds