Wall clock time and date at job start Tue Mar 31 2020 14:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46325 * 120.48823 * 2 1 4 4 C 1.52854 * 109.87120 * 247.83920 * 3 2 1 5 5 H 1.08994 * 110.95599 * 143.56436 * 4 3 2 6 6 C 1.54340 * 108.83428 * 21.11645 * 4 3 2 7 7 C 1.54235 * 105.00710 * 265.49011 * 6 4 3 8 8 C 1.54444 * 104.92784 * 0.36966 * 7 6 4 9 9 H 1.08999 * 111.10756 * 216.13028 * 8 7 6 10 10 C 1.52866 * 108.49565 * 93.80082 * 8 7 6 11 11 C 1.35751 * 120.48825 * 180.02562 * 2 1 3 12 12 O 1.21279 * 120.54346 * 0.09149 * 11 2 1 13 13 N 1.47335 * 105.05700 * 337.05184 * 8 7 6 14 14 C 1.34781 * 127.46618 * 217.77242 * 13 8 7 15 15 O 1.21585 * 120.00087 * 180.02562 * 14 13 8 16 16 N 1.34783 * 119.99691 * 0.02562 * 14 13 8 17 17 C 1.46503 * 119.99801 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46964 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47329 * 300.00252 * 18 17 16 20 20 C 1.53001 * 109.46857 * 60.00244 * 18 17 16 21 21 C 1.50701 * 109.46889 * 180.02562 * 18 17 16 22 22 H 1.07999 * 120.00035 * 0.02562 * 21 18 17 23 23 C 1.37871 * 119.99880 * 180.02562 * 21 18 17 24 24 N 1.31513 * 120.00131 * 359.97438 * 23 21 18 25 25 Si 1.86806 * 120.00120 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46834 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47016 * 119.99645 * 25 23 21 28 28 H 1.48500 * 109.47284 * 239.99758 * 25 23 21 29 29 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47623 * 299.97829 * 1 2 3 31 31 H 1.09000 * 109.47098 * 59.98041 * 1 2 3 32 32 H 1.09007 * 109.40459 * 7.95911 * 3 2 1 33 33 H 1.09001 * 109.40708 * 127.78875 * 3 2 1 34 34 H 1.08998 * 110.32936 * 24.37296 * 6 4 3 35 35 H 1.08998 * 110.33067 * 146.50029 * 6 4 3 36 36 H 1.09004 * 110.34957 * 241.50368 * 7 6 4 37 37 H 1.09002 * 110.35246 * 119.23454 * 7 6 4 38 38 H 1.08997 * 109.42266 * 97.00714 * 10 8 7 39 39 H 1.08996 * 109.42104 * 216.88923 * 10 8 7 40 40 H 0.96994 * 120.00059 * 0.02562 * 16 14 13 41 41 H 1.08999 * 109.46806 * 300.00409 * 17 16 14 42 42 H 1.08997 * 109.46699 * 59.99859 * 17 16 14 43 43 H 1.08996 * 109.47047 * 59.99855 * 19 18 17 44 44 H 1.08997 * 109.46811 * 179.97438 * 19 18 17 45 45 H 1.09002 * 109.46819 * 300.00019 * 19 18 17 46 46 H 1.09008 * 109.47200 * 59.99979 * 20 18 17 47 47 H 1.09002 * 109.47009 * 179.97438 * 20 18 17 48 48 H 1.08996 * 109.47180 * 299.99937 * 20 18 17 49 49 H 0.97005 * 120.00240 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2073 1.2609 0.0000 4 6 2.9382 1.4335 -1.3313 5 1 2.9424 2.4785 -1.6411 6 6 2.2568 0.5441 -2.3928 7 6 3.0668 -0.7685 -2.3936 8 6 4.1621 -0.5607 -1.3247 9 1 5.0970 -1.0350 -1.6234 10 6 3.6585 -1.1283 0.0023 11 6 2.1537 -1.1698 -0.0005 12 8 1.5663 -2.2309 -0.0027 13 7 4.3072 0.9005 -1.2044 14 6 5.4449 1.5988 -1.0183 15 8 5.4075 2.8114 -0.9370 16 7 6.6240 0.9529 -0.9223 17 6 7.8605 1.7119 -0.7194 18 6 9.0453 0.7465 -0.6462 19 6 8.8433 -0.2211 0.5217 20 6 9.1405 -0.0439 -1.9527 21 6 10.3172 1.5272 -0.4369 22 1 10.2838 2.6042 -0.3630 23 6 11.5234 0.8666 -0.3396 24 7 11.5640 -0.4448 -0.4290 25 14 13.1002 1.8344 -0.0809 26 1 12.7859 3.2842 -0.0150 27 1 13.7399 1.4078 1.1896 28 1 14.0282 1.5804 -1.2120 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 1.5136 2.0896 0.1424 33 1 2.9339 1.2534 0.8125 34 1 1.2208 0.3497 -2.1154 35 1 2.3031 1.0203 -3.3722 36 1 3.5183 -0.9346 -3.3717 37 1 2.4274 -1.6087 -2.1228 38 1 4.0487 -2.1371 0.1365 39 1 4.0013 -0.4952 0.8207 40 1 6.6538 -0.0144 -0.9876 41 1 8.0046 2.4009 -1.5517 42 1 7.7924 2.2754 0.2111 43 1 7.9233 -0.7857 0.3707 44 1 9.6871 -0.9090 0.5735 45 1 8.7754 0.3421 1.4525 46 1 9.2845 0.6455 -2.7848 47 1 9.9848 -0.7313 -1.9007 48 1 8.2205 -0.6085 -2.1037 49 1 12.4126 -0.9097 -0.3602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889223574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:36 Heat of formation + Delta-G solvation = -42.274434 kcal Electronic energy + Delta-G solvation = -29519.812705 eV Core-core repulsion = 25675.585049 eV Total energy + Delta-G solvation = -3844.227656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77309 -39.38847 -37.75370 -36.29553 -35.62754 -33.35013 -31.95542 -31.65611 -30.57748 -29.60297 -26.27453 -25.74500 -25.60759 -25.30684 -24.84269 -22.46813 -21.49595 -19.54184 -18.92652 -18.80555 -18.16360 -17.22251 -17.14343 -16.20704 -15.87973 -15.43228 -14.88498 -14.77552 -14.37923 -14.08452 -13.98694 -13.68274 -13.45625 -13.36395 -13.02472 -12.95100 -12.83879 -12.61841 -12.35147 -12.33005 -12.18961 -11.70707 -11.50379 -11.41123 -11.21475 -11.17018 -10.89571 -10.76743 -10.66922 -10.40883 -10.22652 -10.02876 -9.84430 -9.65458 -9.33699 -9.22034 -8.80191 -8.71934 -8.42684 -8.21648 -6.03597 -4.13573 2.33493 2.71445 2.73035 3.26414 3.35249 3.39891 3.45733 3.97818 4.23428 4.38570 4.43099 4.52317 4.59224 4.65926 4.81591 4.90961 4.99237 5.12805 5.20507 5.22635 5.23463 5.39057 5.40950 5.46260 5.54257 5.68306 5.71241 5.81127 5.84728 6.10553 6.20086 6.28965 6.33283 6.48454 6.76434 6.80201 6.89671 7.00731 7.00978 7.04179 7.29514 7.37451 7.54114 7.68648 7.89221 7.99399 8.10582 8.32502 8.38467 8.85965 8.94495 9.52482 10.97855 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.003037 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.581884 B = 9217.756325 C = 9585.055104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.619 5.619 3 C 0.100 3.900 4 C 0.134 3.866 5 H 0.108 0.892 6 C -0.129 4.129 7 C -0.139 4.139 8 C 0.140 3.860 9 H 0.103 0.897 10 C -0.159 4.159 11 C 0.531 3.469 12 O -0.543 6.543 13 N -0.635 5.635 14 C 0.721 3.279 15 O -0.592 6.592 16 N -0.729 5.729 17 C 0.150 3.850 18 C 0.056 3.944 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.505 4.505 22 H 0.058 0.942 23 C 0.066 3.934 24 N -0.886 5.886 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.393 0.607 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.005 0.995 44 H 0.085 0.915 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.004 0.996 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 -1.164 -1.665 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.353 5.353 3 C -0.025 4.025 4 C 0.028 3.972 5 H 0.126 0.874 6 C -0.168 4.168 7 C -0.177 4.177 8 C 0.034 3.966 9 H 0.121 0.879 10 C -0.200 4.200 11 C 0.321 3.679 12 O -0.420 6.420 13 N -0.374 5.374 14 C 0.424 3.576 15 O -0.471 6.471 16 N -0.383 5.383 17 C 0.027 3.973 18 C 0.055 3.945 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.544 4.544 22 H 0.077 0.923 23 C -0.135 4.135 24 N -0.524 5.524 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.229 0.771 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.023 0.977 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.104 0.896 48 H 0.023 0.977 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.416 -0.881 -1.563 20.495 hybrid contribution 0.943 0.096 0.164 0.962 sum -19.473 -0.786 -1.400 19.539 Atomic orbital electron populations 1.21713 0.79252 1.04055 1.01261 1.48095 1.06682 1.06294 1.74266 1.22071 0.96376 0.85706 0.98296 1.22015 0.80777 1.00011 0.94375 0.87387 1.22581 0.99943 0.95261 0.98989 1.22744 0.96985 0.98422 0.99562 1.21583 0.99658 0.82047 0.93273 0.87930 1.22395 0.92181 1.05130 1.00319 1.20715 0.90070 0.83070 0.74071 1.90705 1.71646 1.29697 1.49974 1.48004 1.05594 1.06014 1.77775 1.15541 0.79431 0.84776 0.77892 1.90899 1.85539 1.11589 1.59047 1.45558 1.05728 1.10551 1.76494 1.21625 0.81170 0.94562 0.99929 1.18367 0.91089 0.92141 0.92863 1.21815 0.99152 0.99943 0.97782 1.21819 0.99518 1.00066 0.97312 1.21018 0.90588 0.93204 1.49556 0.92336 1.24875 0.98879 0.94891 0.94860 1.69812 1.25551 1.06719 1.50355 0.86520 0.83340 0.80379 0.77677 1.19739 1.21073 1.21080 0.89635 0.92227 0.92132 0.88802 0.90049 0.89751 0.90823 0.90246 0.89748 0.87326 0.88291 0.77133 0.92874 0.92845 0.97650 0.89622 0.95437 0.95437 0.89604 0.97683 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.08 59.84 0.60 1.16 16 2 N -0.62 -5.56 1.76 -181.58 -0.32 -5.88 16 3 C 0.10 0.86 5.69 -4.21 -0.02 0.84 16 4 C 0.13 1.36 3.73 -66.78 -0.25 1.11 16 5 H 0.11 1.17 7.91 -51.93 -0.41 0.76 16 6 C -0.13 -1.12 5.99 -25.38 -0.15 -1.27 16 7 C -0.14 -1.31 5.99 -25.33 -0.15 -1.46 16 8 C 0.14 1.48 3.61 -66.79 -0.24 1.23 16 9 H 0.10 1.06 6.90 -51.93 -0.36 0.70 16 10 C -0.16 -1.65 5.36 -28.03 -0.15 -1.80 16 11 C 0.53 5.98 4.76 -10.62 -0.05 5.93 16 12 O -0.54 -7.78 16.16 5.56 0.09 -7.69 16 13 N -0.64 -8.02 2.54 -161.40 -0.41 -8.43 16 14 C 0.72 12.25 8.55 -86.91 -0.74 11.50 16 15 O -0.59 -12.19 16.61 5.29 0.09 -12.11 16 16 N -0.73 -12.67 4.93 -65.22 -0.32 -12.99 16 17 C 0.15 3.12 4.50 -4.04 -0.02 3.10 16 18 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 19 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 20 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 21 C -0.51 -13.02 8.01 -34.44 -0.28 -13.30 16 22 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 23 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 24 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 25 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.08 0.72 6.99 -51.93 -0.36 0.36 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 7.26 -51.93 -0.38 -0.06 16 32 H 0.09 0.61 7.95 -51.92 -0.41 0.19 16 33 H 0.08 0.82 6.95 -51.93 -0.36 0.45 16 34 H 0.08 0.66 5.28 -51.93 -0.27 0.39 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.86 6.08 -51.93 -0.32 0.55 16 38 H 0.11 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.10 1.06 7.02 -51.93 -0.36 0.69 16 40 H 0.39 6.23 4.55 -40.82 -0.19 6.05 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 44 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 48 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 49 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -30.32 364.23 -8.60 -38.92 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.69 Total: 5.21 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.02 Total: 4.77 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.53 Total: -50.07 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.18 Total: -19.80 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.32 -8.60 -38.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.357 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds