Wall clock time and date at job start Tue Mar 31 2020 14:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46325 * 120.48823 * 2 1 4 4 C 1.52854 * 109.87120 * 247.83920 * 3 2 1 5 5 H 1.08994 * 110.95599 * 143.56436 * 4 3 2 6 6 C 1.54340 * 108.83428 * 21.11645 * 4 3 2 7 7 C 1.54235 * 105.00710 * 265.49011 * 6 4 3 8 8 C 1.54444 * 104.92784 * 0.36966 * 7 6 4 9 9 H 1.08999 * 111.10756 * 216.13028 * 8 7 6 10 10 C 1.52866 * 108.49565 * 93.80082 * 8 7 6 11 11 C 1.35751 * 120.48825 * 180.02562 * 2 1 3 12 12 O 1.21279 * 120.54346 * 0.09149 * 11 2 1 13 13 N 1.47335 * 105.05700 * 337.05184 * 8 7 6 14 14 C 1.34781 * 127.46618 * 217.77242 * 13 8 7 15 15 O 1.21585 * 120.00087 * 180.02562 * 14 13 8 16 16 N 1.34783 * 119.99691 * 0.02562 * 14 13 8 17 17 C 1.46503 * 119.99801 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46964 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47329 * 300.00252 * 18 17 16 20 20 C 1.53001 * 109.46857 * 60.00244 * 18 17 16 21 21 C 1.50701 * 109.46889 * 180.02562 * 18 17 16 22 22 H 1.07999 * 120.00035 * 0.02562 * 21 18 17 23 23 C 1.37871 * 119.99880 * 180.02562 * 21 18 17 24 24 N 1.31513 * 120.00131 * 359.97438 * 23 21 18 25 25 Si 1.86806 * 120.00120 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46834 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47016 * 119.99645 * 25 23 21 28 28 H 1.48500 * 109.47284 * 239.99758 * 25 23 21 29 29 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47623 * 299.97829 * 1 2 3 31 31 H 1.09000 * 109.47098 * 59.98041 * 1 2 3 32 32 H 1.09007 * 109.40459 * 7.95911 * 3 2 1 33 33 H 1.09001 * 109.40708 * 127.78875 * 3 2 1 34 34 H 1.08998 * 110.32936 * 24.37296 * 6 4 3 35 35 H 1.08998 * 110.33067 * 146.50029 * 6 4 3 36 36 H 1.09004 * 110.34957 * 241.50368 * 7 6 4 37 37 H 1.09002 * 110.35246 * 119.23454 * 7 6 4 38 38 H 1.08997 * 109.42266 * 97.00714 * 10 8 7 39 39 H 1.08996 * 109.42104 * 216.88923 * 10 8 7 40 40 H 0.96994 * 120.00059 * 0.02562 * 16 14 13 41 41 H 1.08999 * 109.46806 * 300.00409 * 17 16 14 42 42 H 1.08997 * 109.46699 * 59.99859 * 17 16 14 43 43 H 1.08996 * 109.47047 * 59.99855 * 19 18 17 44 44 H 1.08997 * 109.46811 * 179.97438 * 19 18 17 45 45 H 1.09002 * 109.46819 * 300.00019 * 19 18 17 46 46 H 1.09008 * 109.47200 * 59.99979 * 20 18 17 47 47 H 1.09002 * 109.47009 * 179.97438 * 20 18 17 48 48 H 1.08996 * 109.47180 * 299.99937 * 20 18 17 49 49 H 0.97005 * 120.00240 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2073 1.2609 0.0000 4 6 2.9382 1.4335 -1.3313 5 1 2.9424 2.4785 -1.6411 6 6 2.2568 0.5441 -2.3928 7 6 3.0668 -0.7685 -2.3936 8 6 4.1621 -0.5607 -1.3247 9 1 5.0970 -1.0350 -1.6234 10 6 3.6585 -1.1283 0.0023 11 6 2.1537 -1.1698 -0.0005 12 8 1.5663 -2.2309 -0.0027 13 7 4.3072 0.9005 -1.2044 14 6 5.4449 1.5988 -1.0183 15 8 5.4075 2.8114 -0.9370 16 7 6.6240 0.9529 -0.9223 17 6 7.8605 1.7119 -0.7194 18 6 9.0453 0.7465 -0.6462 19 6 8.8433 -0.2211 0.5217 20 6 9.1405 -0.0439 -1.9527 21 6 10.3172 1.5272 -0.4369 22 1 10.2838 2.6042 -0.3630 23 6 11.5234 0.8666 -0.3396 24 7 11.5640 -0.4448 -0.4290 25 14 13.1002 1.8344 -0.0809 26 1 12.7859 3.2842 -0.0150 27 1 13.7399 1.4078 1.1896 28 1 14.0282 1.5804 -1.2120 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 1.5136 2.0896 0.1424 33 1 2.9339 1.2534 0.8125 34 1 1.2208 0.3497 -2.1154 35 1 2.3031 1.0203 -3.3722 36 1 3.5183 -0.9346 -3.3717 37 1 2.4274 -1.6087 -2.1228 38 1 4.0487 -2.1371 0.1365 39 1 4.0013 -0.4952 0.8207 40 1 6.6538 -0.0144 -0.9876 41 1 8.0046 2.4009 -1.5517 42 1 7.7924 2.2754 0.2111 43 1 7.9233 -0.7857 0.3707 44 1 9.6871 -0.9090 0.5735 45 1 8.7754 0.3421 1.4525 46 1 9.2845 0.6455 -2.7848 47 1 9.9848 -0.7313 -1.9007 48 1 8.2205 -0.6085 -2.1037 49 1 12.4126 -0.9097 -0.3602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889223574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:35 Heat of formation + Delta-G solvation = -59.568783 kcal Electronic energy + Delta-G solvation = -29520.562644 eV Core-core repulsion = 25675.585049 eV Total energy + Delta-G solvation = -3844.977595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66861 -40.63801 -38.88014 -37.93426 -36.45496 -34.97922 -33.05757 -32.86777 -31.93218 -30.39301 -27.54685 -27.45985 -27.06016 -26.49076 -26.07135 -23.59275 -22.32636 -20.75502 -20.59351 -19.72321 -19.31563 -18.08301 -17.95975 -17.77738 -17.06594 -16.76141 -16.61470 -16.16915 -15.41976 -15.26928 -14.94917 -14.73972 -14.69425 -14.57582 -14.16386 -14.11733 -13.99597 -13.69206 -13.57062 -13.24308 -13.14177 -13.09806 -12.99716 -12.67989 -12.56009 -12.48514 -12.29080 -12.23726 -12.12664 -11.96262 -11.49735 -11.46725 -11.34483 -11.12235 -10.90935 -10.68080 -10.39310 -10.26048 -9.85534 -9.40826 -8.00912 -6.16279 1.42480 1.46569 1.46817 1.53990 1.58626 1.99764 2.14361 2.46896 2.97833 3.23096 3.24839 3.61622 3.64434 3.77199 3.89059 4.09220 4.16469 4.29999 4.38095 4.43415 4.51486 4.55777 4.57857 4.63243 4.68011 4.71978 4.74494 4.87701 4.95561 4.98640 5.01250 5.06310 5.07285 5.10955 5.14424 5.21973 5.35942 5.39836 5.49893 5.63259 5.69152 5.69520 6.09970 6.17050 6.22096 6.24112 6.45518 6.88495 7.01590 7.06447 7.51645 7.59372 8.98129 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.003037 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.581884 B = 9217.756325 C = 9585.055104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.105 3.895 4 C 0.128 3.872 5 H 0.104 0.896 6 C -0.121 4.121 7 C -0.134 4.134 8 C 0.137 3.863 9 H 0.108 0.892 10 C -0.155 4.155 11 C 0.529 3.471 12 O -0.577 6.577 13 N -0.628 5.628 14 C 0.722 3.278 15 O -0.631 6.631 16 N -0.724 5.724 17 C 0.168 3.832 18 C 0.052 3.948 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.527 4.527 22 H 0.045 0.955 23 C 0.029 3.971 24 N -0.899 5.899 25 Si 0.944 3.056 26 H -0.275 1.275 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.402 0.598 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.026 -1.239 -2.013 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.019 4.019 4 C 0.024 3.976 5 H 0.122 0.878 6 C -0.160 4.160 7 C -0.172 4.172 8 C 0.032 3.968 9 H 0.126 0.874 10 C -0.196 4.196 11 C 0.320 3.680 12 O -0.457 6.457 13 N -0.366 5.366 14 C 0.425 3.575 15 O -0.513 6.513 16 N -0.379 5.379 17 C 0.044 3.956 18 C 0.052 3.948 19 C -0.176 4.176 20 C -0.177 4.177 21 C -0.565 4.565 22 H 0.064 0.936 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.771 3.229 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.114 0.886 40 H 0.239 0.761 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.125 -0.974 -1.918 22.230 hybrid contribution 1.384 0.128 0.273 1.416 sum -20.741 -0.846 -1.645 20.823 Atomic orbital electron populations 1.21881 0.77733 1.03685 1.03241 1.48138 1.07621 1.05717 1.72990 1.22044 0.96693 0.86333 0.96849 1.22253 0.79487 1.00106 0.95792 0.87827 1.22561 1.00170 0.94363 0.98875 1.22700 0.96525 0.98607 0.99385 1.21749 1.00508 0.80553 0.93941 0.87439 1.22351 0.91934 1.05395 0.99962 1.20803 0.90298 0.83167 0.73752 1.90695 1.72238 1.30968 1.51840 1.47931 1.05328 1.07039 1.76270 1.15554 0.80048 0.84346 0.77581 1.90871 1.86249 1.13426 1.60721 1.45254 1.05102 1.10667 1.76918 1.21138 0.82067 0.93920 0.98453 1.18353 0.90682 0.92374 0.93421 1.21645 0.99581 0.99317 0.97069 1.21653 0.99998 0.99441 0.96571 1.21304 0.92353 0.92988 1.49884 0.93625 1.25432 1.01100 0.95691 0.94874 1.69914 1.25972 1.07388 1.50525 0.85725 0.80513 0.79147 0.77526 1.19930 1.20823 1.20841 0.91159 0.90570 0.89812 0.85893 0.91321 0.88532 0.90038 0.89464 0.90197 0.86738 0.88592 0.76086 0.94539 0.94389 0.94652 0.91995 0.96264 0.96318 0.91945 0.94700 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.08 127.77 1.29 2.14 16 2 N -0.61 -9.53 1.76 -846.24 -1.49 -11.02 16 3 C 0.11 1.55 5.69 86.36 0.49 2.04 16 4 C 0.13 2.32 3.73 45.21 0.17 2.49 16 5 H 0.10 2.03 7.91 -2.39 -0.02 2.02 16 6 C -0.12 -1.76 5.99 31.47 0.19 -1.57 16 7 C -0.13 -2.21 5.99 31.50 0.19 -2.02 16 8 C 0.14 2.62 3.61 45.28 0.16 2.79 16 9 H 0.11 1.98 6.90 -2.39 -0.02 1.96 16 10 C -0.16 -2.97 5.36 29.75 0.16 -2.81 16 11 C 0.53 11.06 4.76 87.45 0.42 11.47 16 12 O -0.58 -15.94 16.16 -3.03 -0.05 -15.99 16 13 N -0.63 -14.84 2.54 -782.82 -1.99 -16.84 16 14 C 0.72 23.87 8.55 179.05 1.53 25.40 16 15 O -0.63 -25.84 16.61 -3.98 -0.07 -25.91 16 16 N -0.72 -24.47 4.93 -478.52 -2.36 -26.83 16 17 C 0.17 7.03 4.50 86.38 0.39 7.42 16 18 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 19 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 20 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 21 C -0.53 -27.47 8.01 25.60 0.21 -27.27 16 22 H 0.05 2.44 7.74 -2.91 -0.02 2.41 16 23 C 0.03 1.50 5.15 84.65 0.44 1.93 16 24 N -0.90 -47.42 9.35 21.44 0.20 -47.22 16 25 Si 0.94 42.24 29.54 68.60 2.03 44.26 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 H 0.07 1.06 6.99 -2.39 -0.02 1.04 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.58 7.26 -2.39 -0.02 0.56 16 32 H 0.12 1.16 7.95 -2.38 -0.02 1.14 16 33 H 0.07 1.25 6.95 -2.39 -0.02 1.23 16 34 H 0.10 1.20 5.28 -2.39 -0.01 1.18 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.08 1.46 6.08 -2.39 -0.01 1.45 16 38 H 0.11 2.07 8.13 -2.39 -0.02 2.05 16 39 H 0.10 1.92 7.02 -2.39 -0.02 1.90 16 40 H 0.40 12.00 4.55 -92.71 -0.42 11.57 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 44 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 48 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 49 H 0.26 13.19 8.31 -92.70 -0.77 12.42 16 Total: -1.00 -65.64 364.23 3.58 -62.06 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.54 Total: 22.26 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 6.76 Total: 15.21 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -5.64 Total: -101.90 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.12 Total: -41.89 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -65.64 3.58 -62.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.491 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds