Wall clock time and date at job start Tue Mar 31 2020 14:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46758 * 2 1 4 4 C 1.53001 * 109.46758 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47429 * 54.99565 * 4 3 2 6 6 C 1.53000 * 109.47447 * 174.99979 * 4 3 2 7 7 N 1.46506 * 109.47270 * 294.99941 * 4 3 2 8 8 C 1.46761 * 124.34925 * 119.72461 * 7 4 3 9 9 C 1.54660 * 105.37950 * 162.85920 * 8 7 4 10 10 H 1.09002 * 110.85587 * 143.79210 * 9 8 7 11 11 C 1.50706 * 111.19118 * 267.59234 * 9 8 7 12 12 O 1.21283 * 120.00104 * 353.86172 * 11 9 8 13 13 N 1.34774 * 120.00150 * 173.86695 * 11 9 8 14 14 C 1.46497 * 120.00140 * 180.02562 * 13 11 9 15 15 C 1.53949 * 113.74292 * 253.74161 * 14 13 11 16 16 N 1.47813 * 86.03681 * 222.08379 * 15 14 13 17 17 C 1.36935 * 134.45765 * 204.64624 * 16 15 14 18 18 H 1.08005 * 120.00232 * 179.86546 * 17 16 15 19 19 C 1.38814 * 119.99718 * 359.85715 * 17 16 15 20 20 N 1.31616 * 120.00060 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47204 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47284 * 120.00181 * 21 19 17 24 24 H 1.48504 * 109.47262 * 240.00296 * 21 19 17 25 25 C 1.47582 * 91.05117 * 24.54547 * 16 15 14 26 26 C 1.54628 * 101.68669 * 25.76502 * 9 8 7 27 27 C 1.34412 * 124.34671 * 300.02933 * 7 4 3 28 28 O 1.21286 * 124.94559 * 0.38039 * 27 7 4 29 29 H 1.09003 * 109.46835 * 60.00216 * 1 2 3 30 30 H 1.09001 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47463 * 299.99973 * 1 2 3 32 32 H 1.08999 * 109.47013 * 239.99740 * 2 1 3 33 33 H 1.08993 * 109.46841 * 119.99835 * 2 1 3 34 34 H 1.08999 * 109.47571 * 60.00081 * 3 2 1 35 35 H 1.08993 * 109.47310 * 299.99548 * 3 2 1 36 36 H 1.09002 * 109.46958 * 300.00113 * 6 4 3 37 37 H 1.09001 * 109.46895 * 59.99863 * 6 4 3 38 38 H 1.08990 * 109.47552 * 179.97438 * 6 4 3 39 39 H 1.08999 * 110.24579 * 281.98491 * 8 7 4 40 40 H 1.08994 * 110.24698 * 43.98230 * 8 7 4 41 41 H 0.97003 * 119.99759 * 359.97438 * 13 11 9 42 42 H 1.09001 * 112.94330 * 25.32909 * 14 13 11 43 43 H 1.09005 * 113.76107 * 336.34255 * 15 14 13 44 44 H 1.08988 * 113.77465 * 107.73999 * 15 14 13 45 45 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 46 46 H 1.08999 * 113.76877 * 221.15529 * 25 16 15 47 47 H 1.08996 * 113.87280 * 89.76795 * 25 16 15 48 48 H 1.09004 * 110.48139 * 216.31083 * 26 9 8 49 49 H 1.09000 * 110.59593 * 93.72217 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0800 2.8796 -0.1264 7 7 4.0589 0.8586 1.2509 8 6 4.9014 -0.3403 1.3317 9 6 5.5136 -0.3165 2.7518 10 1 5.5984 -1.3257 3.1548 11 6 6.8514 0.3774 2.7567 12 8 7.3567 0.7277 1.7113 13 7 7.4864 0.6086 3.9228 14 6 8.7866 1.2836 3.9276 15 6 9.9710 0.3452 4.2217 16 7 10.4860 1.4321 5.0810 17 6 11.7288 1.7954 5.5265 18 1 11.8427 2.6601 6.1636 19 6 12.8423 1.0522 5.1594 20 7 12.7035 -0.0013 4.3828 21 14 14.5376 1.5473 5.7677 22 1 14.4237 2.7579 6.6202 23 1 15.1225 0.4368 6.5615 24 1 15.4145 1.8404 4.6056 25 6 9.1238 1.9698 5.2637 26 6 4.4615 0.5047 3.5327 27 6 3.7886 1.3488 2.4729 28 8 3.1050 2.3261 2.6939 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7162 3.3140 -1.0575 37 1 3.7170 3.4689 0.7157 38 1 5.1699 2.8796 -0.1264 39 1 4.2963 -1.2365 1.1939 40 1 5.6905 -0.2981 0.5812 41 1 7.0821 0.3287 4.7590 42 1 8.9376 1.9210 3.0564 43 1 9.6928 -0.5544 4.7708 44 1 10.5943 0.1385 3.3519 45 1 13.4817 -0.5204 4.1260 46 1 9.0720 3.0579 5.2241 47 1 8.5948 1.5497 6.1191 48 1 4.9467 1.1390 4.2746 49 1 3.7378 -0.1554 4.0110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031435167.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:45 Heat of formation + Delta-G solvation = -49.417739 kcal Electronic energy + Delta-G solvation = -28119.290096 eV Core-core repulsion = 24274.752683 eV Total energy + Delta-G solvation = -3844.537413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01482 -40.61637 -39.18828 -37.56649 -36.57535 -35.17768 -33.97221 -33.49780 -30.99813 -29.36732 -28.60335 -27.59380 -26.62895 -25.64630 -23.88948 -23.45978 -22.27358 -21.38384 -21.03426 -19.86582 -18.79437 -18.53626 -17.78956 -17.38140 -17.00266 -16.55980 -16.40153 -15.87351 -15.72465 -15.60943 -15.18601 -14.90129 -14.75538 -14.62897 -14.43533 -13.92757 -13.67900 -13.56839 -13.47021 -13.29673 -13.21408 -13.10684 -12.83864 -12.78339 -12.74450 -12.63004 -12.52853 -12.39571 -12.26536 -11.92171 -11.87845 -11.61411 -11.54287 -11.53127 -10.91782 -10.80630 -10.58575 -9.94463 -9.61819 -8.98311 -7.93728 -5.28623 1.44900 1.46393 1.56678 1.60966 1.64118 2.05423 2.17575 2.48802 3.24521 3.32303 3.36166 3.39297 3.73535 3.77372 3.84182 3.95348 4.04861 4.12711 4.30048 4.32914 4.43503 4.46069 4.51881 4.58025 4.63864 4.69860 4.73539 4.74263 4.79120 4.87487 4.88420 4.91049 4.95145 5.00795 5.04428 5.18436 5.21971 5.23805 5.27344 5.34059 5.46640 5.47916 5.70788 5.73883 5.88978 6.23107 6.62755 6.87679 7.22504 7.31868 7.56611 8.49477 9.23199 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.002335 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.055265 B =11989.341470 C =12023.516331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.153 3.847 5 H 0.106 0.894 6 C -0.164 4.164 7 N -0.607 5.607 8 C 0.113 3.887 9 C -0.111 4.111 10 H 0.171 0.829 11 C 0.513 3.487 12 O -0.581 6.581 13 N -0.701 5.701 14 C 0.122 3.878 15 C 0.155 3.845 16 N -0.641 5.641 17 C -0.234 4.234 18 H 0.088 0.912 19 C -0.070 4.070 20 N -0.954 5.954 21 Si 0.982 3.018 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.294 1.294 25 C 0.120 3.880 26 C -0.139 4.139 27 C 0.505 3.495 28 O -0.574 6.574 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.417 0.583 42 H 0.085 0.915 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.249 0.751 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.238 -4.725 -6.572 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.166 4.166 4 C 0.051 3.949 5 H 0.124 0.876 6 C -0.222 4.222 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.132 4.132 10 H 0.188 0.812 11 C 0.300 3.700 12 O -0.460 6.460 13 N -0.353 5.353 14 C 0.015 3.985 15 C 0.029 3.971 16 N -0.368 5.368 17 C -0.362 4.362 18 H 0.106 0.894 19 C -0.263 4.263 20 N -0.603 5.603 21 Si 0.810 3.190 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.221 1.221 25 C -0.005 4.005 26 C -0.179 4.179 27 C 0.293 3.707 28 O -0.455 6.455 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.099 0.901 41 H 0.255 0.745 42 H 0.103 0.897 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.123 0.877 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.921 -3.939 -7.232 26.246 hybrid contribution 1.373 0.253 0.592 1.517 sum -23.547 -3.686 -6.640 24.741 Atomic orbital electron populations 1.21747 0.95593 1.01968 1.01470 1.21458 0.96037 0.95564 1.02296 1.21958 0.93596 0.98410 1.02658 1.21112 0.94354 0.93976 0.85491 0.87570 1.22115 1.00436 0.97010 1.02604 1.48460 1.50565 1.28912 1.06044 1.22267 0.94171 0.88135 0.96382 1.22421 0.89569 1.03167 0.98082 0.81189 1.21078 0.87320 0.78425 0.83187 1.90705 1.68995 1.53187 1.33156 1.45840 1.20231 1.59514 1.09676 1.23079 0.81946 0.94987 0.98493 1.22586 0.90428 0.91088 0.93032 1.46073 1.01431 1.31163 1.58157 1.19447 0.82791 1.09166 1.24804 0.89393 1.25703 1.01799 0.97869 1.00888 1.70031 1.29388 1.20159 1.40694 0.84961 0.79160 0.77651 0.77244 1.18688 1.21712 1.22085 1.23016 0.84580 0.98182 0.94732 1.22455 0.98771 0.99654 0.97041 1.21349 0.79821 0.84001 0.85480 1.90671 1.41849 1.28392 1.84553 0.92409 0.91890 0.93904 0.90824 0.92375 0.92970 0.89971 0.89673 0.93775 0.94036 0.86348 0.90124 0.74541 0.89697 0.95077 0.94980 0.94218 0.92406 0.91290 0.87716 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.45 5.82 30.60 0.18 -1.28 16 3 C -0.13 -2.10 4.64 30.60 0.14 -1.95 16 4 C 0.15 2.79 2.86 44.99 0.13 2.92 16 5 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 6 C -0.16 -3.65 9.20 71.98 0.66 -2.98 16 7 N -0.61 -11.66 2.28 -793.69 -1.81 -13.48 16 8 C 0.11 1.66 6.69 86.90 0.58 2.24 16 9 C -0.11 -1.59 3.54 -10.42 -0.04 -1.62 16 10 H 0.17 1.03 8.14 -2.39 -0.02 1.01 16 11 C 0.51 13.44 7.16 87.66 0.63 14.07 16 12 O -0.58 -21.13 15.16 -3.04 -0.05 -21.17 16 13 N -0.70 -18.47 5.10 -447.37 -2.28 -20.75 16 14 C 0.12 4.56 4.40 46.75 0.21 4.76 16 15 C 0.16 7.38 7.33 86.44 0.63 8.02 16 16 N -0.64 -32.70 3.70 -716.66 -2.65 -35.35 16 17 C -0.23 -13.13 10.70 84.03 0.90 -12.23 16 18 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 20 N -0.95 -58.32 11.39 21.65 0.25 -58.07 16 21 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 C 0.12 4.55 8.69 86.48 0.75 5.30 16 26 C -0.14 -1.96 6.38 30.59 0.20 -1.76 16 27 C 0.50 11.51 7.39 87.90 0.65 12.16 16 28 O -0.57 -17.80 15.07 -3.05 -0.05 -17.84 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.76 7.75 -2.39 -0.02 0.74 16 34 H 0.05 1.18 6.63 -2.39 -0.02 1.16 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.21 6.80 -2.39 -0.02 1.19 16 38 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.56 6.97 -2.39 -0.02 1.54 16 41 H 0.42 7.77 8.53 -92.71 -0.79 6.98 16 42 H 0.08 3.66 7.51 -2.39 -0.02 3.64 16 43 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.03 1.79 7.16 -2.39 -0.02 1.78 16 45 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 48 H 0.10 1.58 7.51 -2.39 -0.02 1.56 16 49 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -81.21 392.67 2.38 -78.83 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.14 Total: 16.84 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.80 Total: 23.04 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -6.50 Total: -127.65 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.09 Total: -39.02 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -81.21 2.38 -78.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031435167.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.412 kcal (2) G-P(sol) polarization free energy of solvation -81.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds