Wall clock time and date at job start Tue Mar 31 2020 13:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52997 * 109.47108 * 120.00120 * 2 1 3 5 5 C 1.52999 * 109.47134 * 175.00220 * 4 2 1 6 6 C 1.50709 * 109.47121 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99583 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99853 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99764 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47062 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99770 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99859 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99673 * 179.97438 * 12 10 9 14 14 H 1.09000 * 115.52041 * 350.41250 * 13 12 10 15 15 C 1.53005 * 117.44036 * 204.99420 * 13 12 10 16 16 H 1.09005 * 119.53947 * 5.76631 * 15 13 12 17 17 C 1.54388 * 118.11905 * 160.85471 * 15 13 12 18 18 N 1.48138 * 104.61913 * 87.19617 * 17 15 13 19 19 C 1.36938 * 127.84360 * 140.39168 * 18 17 15 20 20 H 1.07994 * 120.00356 * 195.58312 * 19 18 17 21 21 C 1.38815 * 119.99754 * 15.57716 * 19 18 17 22 22 N 1.31629 * 119.99956 * 9.10649 * 21 19 18 23 23 Si 1.86796 * 120.00059 * 189.10312 * 21 19 18 24 24 H 1.48493 * 109.47318 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46964 * 120.00093 * 23 21 19 26 26 H 1.48499 * 109.46952 * 239.99950 * 23 21 19 27 27 C 1.48153 * 104.32398 * 320.41174 * 18 17 15 28 28 C 1.53006 * 117.40259 * 135.77273 * 13 12 10 29 29 H 1.09000 * 119.54442 * 355.89368 * 28 13 12 30 30 H 1.08991 * 109.47154 * 300.00117 * 1 2 3 31 31 H 1.08997 * 109.46745 * 60.00488 * 1 2 3 32 32 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47193 * 239.99555 * 2 1 3 34 34 H 1.08991 * 109.47199 * 59.99911 * 3 2 1 35 35 H 1.08999 * 109.46729 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46875 * 299.99937 * 3 2 1 37 37 H 1.09000 * 109.47543 * 54.99761 * 4 2 1 38 38 H 1.09004 * 109.46757 * 294.99943 * 4 2 1 39 39 H 1.08994 * 109.47356 * 59.99824 * 5 4 2 40 40 H 1.09004 * 109.47072 * 299.99530 * 5 4 2 41 41 H 0.96996 * 119.99980 * 359.97438 * 8 6 5 42 42 H 1.08994 * 109.47151 * 59.99630 * 9 8 6 43 43 H 1.09004 * 109.46850 * 299.99597 * 9 8 6 44 44 H 0.96998 * 120.00306 * 359.97438 * 12 10 9 45 45 H 1.09008 * 110.40239 * 205.97954 * 17 15 13 46 46 H 1.08997 * 110.40686 * 328.40666 * 17 15 13 47 47 H 0.97001 * 119.99692 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.40795 * 280.80296 * 27 18 17 49 49 H 1.09001 * 110.40913 * 158.36901 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0672 -1.5409 2.4188 7 8 3.2829 -1.9211 3.2621 8 7 5.3882 -1.7523 2.5828 9 6 5.8766 -2.4419 3.7795 10 6 7.3785 -2.5501 3.7192 11 8 7.9815 -2.0963 2.7697 12 7 8.0515 -3.1521 4.7197 13 6 9.5115 -3.2577 4.6607 14 1 9.9647 -2.9756 3.7104 15 6 10.1683 -4.3955 5.4449 16 1 9.5426 -5.1395 5.9381 17 6 11.6047 -4.8102 5.0598 18 7 12.4779 -3.9136 5.8524 19 6 13.6513 -4.2274 6.4849 20 1 14.0588 -3.5596 7.2294 21 6 14.3168 -5.4039 6.1691 22 7 13.9227 -6.1280 5.1430 23 14 15.7718 -5.9596 7.2004 24 1 16.0115 -4.9775 8.2881 25 1 15.4802 -7.2905 7.7913 26 1 16.9800 -6.0531 6.3421 27 6 11.7935 -2.6005 5.8061 28 6 10.2927 -2.9386 5.9369 29 1 9.7598 -2.5822 6.8184 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6054 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.9994 0.1675 1.1421 40 1 3.8532 -1.3940 0.3002 41 1 6.0154 -1.4478 1.9085 42 1 5.4423 -3.4405 3.8261 43 1 5.5879 -1.8784 4.6668 44 1 7.5692 -3.5153 5.4789 45 1 11.7847 -5.8512 5.3286 46 1 11.7713 -4.6579 3.9935 47 1 14.3876 -6.9503 4.9226 48 1 11.9896 -2.1030 4.8562 49 1 12.1160 -1.9742 6.6379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114982846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:26 Heat of formation + Delta-G solvation = -34.329124 kcal Electronic energy + Delta-G solvation = -26217.567078 eV Core-core repulsion = 22373.683957 eV Total energy + Delta-G solvation = -3843.883122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.46127 -39.63003 -38.42311 -36.96344 -34.80745 -34.49942 -32.78447 -31.54249 -30.41478 -28.18923 -27.56788 -27.20836 -25.65202 -24.46392 -22.02899 -20.76200 -20.72497 -20.34361 -20.18285 -19.36369 -17.91091 -17.01381 -16.74668 -16.42808 -16.25023 -15.81224 -15.62353 -14.93711 -14.75002 -14.58725 -14.08949 -13.86279 -13.67119 -13.45878 -13.30996 -13.08149 -12.80973 -12.68146 -12.60057 -12.29251 -12.15894 -11.71402 -11.61570 -11.57292 -11.20649 -11.04501 -11.03507 -10.94014 -10.88239 -10.46209 -10.29020 -10.20598 -10.17652 -10.05809 -9.78417 -9.45831 -9.26985 -8.79414 -8.45577 -6.91527 -5.84011 -3.18444 2.31818 2.40533 2.55226 3.21266 3.35609 3.41643 3.44069 4.21361 4.30050 4.39212 4.41980 4.46225 4.49344 4.71049 4.84662 5.00853 5.03370 5.06735 5.08772 5.18352 5.25525 5.29107 5.32293 5.32660 5.43356 5.50345 5.51172 5.63381 5.68053 5.76650 5.81070 5.83732 5.93190 5.96914 6.02690 6.07430 6.14763 6.46062 6.63656 6.67085 6.83649 7.19541 7.28522 7.36616 7.48318 7.67383 7.91776 8.01666 8.15826 9.06669 9.69359 10.45706 11.30446 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.048919 B = 0.001594 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.241908 B =17559.305114 C =17619.262178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.515 3.485 7 O -0.544 6.544 8 N -0.720 5.720 9 C 0.100 3.900 10 C 0.511 3.489 11 O -0.537 6.537 12 N -0.691 5.691 13 C 0.093 3.907 14 H 0.133 0.867 15 C -0.178 4.178 16 H 0.104 0.896 17 C 0.185 3.815 18 N -0.593 5.593 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.155 3.845 28 C -0.181 4.181 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.413 0.587 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.402 0.598 45 H 0.092 0.908 46 H 0.026 0.974 47 H 0.254 0.746 48 H 0.028 0.972 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.277 10.831 -7.867 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.302 3.698 7 O -0.421 6.421 8 N -0.375 5.375 9 C -0.028 4.028 10 C 0.296 3.704 11 O -0.414 6.414 12 N -0.339 5.339 13 C -0.012 4.012 14 H 0.150 0.850 15 C -0.199 4.199 16 H 0.122 0.878 17 C 0.058 3.942 18 N -0.316 5.316 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.029 3.971 28 C -0.203 4.203 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.251 0.749 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.237 0.763 45 H 0.110 0.890 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.046 0.954 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.162 10.705 -7.920 27.588 hybrid contribution 0.813 -0.468 0.717 1.181 sum -23.348 10.237 -7.203 26.492 Atomic orbital electron populations 1.21825 0.95056 1.01843 1.01756 1.21154 0.95966 0.96392 0.98219 1.21925 1.01165 0.95971 1.01839 1.21414 0.92594 1.01619 0.98076 1.21752 0.98288 1.01893 0.96189 1.20803 0.81454 0.79169 0.88423 1.90709 1.55338 1.51374 1.44665 1.45785 1.08183 1.60008 1.23558 1.21048 0.91165 1.00114 0.90435 1.20433 0.89360 0.77878 0.82699 1.90707 1.69769 1.47799 1.33137 1.45280 1.07222 1.58361 1.23045 1.21900 0.77800 1.03826 0.97723 0.84979 1.24673 1.00693 0.91176 1.03405 0.87771 1.21073 0.81854 0.97462 0.93763 1.45185 1.22930 1.03264 1.60240 1.19045 0.96726 1.05147 1.14664 0.90427 1.24909 0.98809 0.98958 0.97559 1.69907 1.42597 1.16296 1.27307 0.86032 0.81862 0.78390 0.79379 1.20332 1.21607 1.21638 1.21124 0.87531 0.89837 0.98652 1.24384 0.98196 1.00485 0.97207 0.87837 0.92611 0.92731 0.92621 0.91112 0.92591 0.92421 0.92750 0.91130 0.91114 0.88493 0.88659 0.74901 0.88290 0.88330 0.76340 0.88988 0.95598 0.93542 0.95441 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.10 -0.54 2.92 -90.62 -0.26 -0.81 16 3 C -0.15 -0.77 8.95 37.16 0.33 -0.44 16 4 C -0.10 -0.69 3.97 -26.73 -0.11 -0.80 16 5 C -0.14 -0.93 5.46 -27.88 -0.15 -1.08 16 6 C 0.51 5.05 7.83 -10.98 -0.09 4.96 16 7 O -0.54 -7.15 15.98 5.56 0.09 -7.06 16 8 N -0.72 -6.80 5.53 -61.47 -0.34 -7.14 16 9 C 0.10 0.94 6.15 -5.19 -0.03 0.91 16 10 C 0.51 6.23 7.90 -10.99 -0.09 6.15 16 11 O -0.54 -8.39 15.23 5.55 0.08 -8.31 16 12 N -0.69 -8.30 5.56 -53.80 -0.30 -8.60 16 13 C 0.09 1.48 5.98 -67.93 -0.41 1.07 16 14 H 0.13 2.39 7.40 -51.93 -0.38 2.01 16 15 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 16 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 17 C 0.18 4.33 5.70 -2.41 -0.01 4.32 16 18 N -0.59 -14.94 3.38 -168.86 -0.57 -15.51 16 19 C -0.23 -6.26 10.35 -15.06 -0.16 -6.41 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 21 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 22 N -0.91 -26.46 10.87 55.49 0.60 -25.86 16 23 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.16 3.21 7.04 -2.40 -0.02 3.19 16 28 C -0.18 -3.09 7.06 -89.22 -0.63 -3.72 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.10 0.51 6.57 -51.93 -0.34 0.17 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.41 3.73 7.44 -40.82 -0.30 3.43 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.40 3.67 8.83 -40.82 -0.36 3.31 16 45 H 0.09 2.41 6.51 -51.92 -0.34 2.07 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -32.99 398.03 -9.83 -42.83 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.37 Total: 4.22 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.00 Total: 2.81 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.61 Total: -57.11 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.17 Total: -15.37 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.99 -9.83 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114982846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.499 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds