Wall clock time and date at job start Tue Mar 31 2020 13:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 C 1.52997 * 109.47108 * 120.00120 * 2 1 3 5 5 C 1.52999 * 109.47134 * 175.00220 * 4 2 1 6 6 C 1.50709 * 109.47121 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99583 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99853 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99764 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47062 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99770 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99859 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99673 * 179.97438 * 12 10 9 14 14 H 1.09000 * 115.52041 * 350.41250 * 13 12 10 15 15 C 1.53005 * 117.44036 * 204.99420 * 13 12 10 16 16 H 1.09005 * 119.53947 * 5.76631 * 15 13 12 17 17 C 1.54388 * 118.11905 * 160.85471 * 15 13 12 18 18 N 1.48138 * 104.61913 * 87.19617 * 17 15 13 19 19 C 1.36938 * 127.84360 * 140.39168 * 18 17 15 20 20 H 1.07994 * 120.00356 * 195.58312 * 19 18 17 21 21 C 1.38815 * 119.99754 * 15.57716 * 19 18 17 22 22 N 1.31629 * 119.99956 * 9.10649 * 21 19 18 23 23 Si 1.86796 * 120.00059 * 189.10312 * 21 19 18 24 24 H 1.48493 * 109.47318 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46964 * 120.00093 * 23 21 19 26 26 H 1.48499 * 109.46952 * 239.99950 * 23 21 19 27 27 C 1.48153 * 104.32398 * 320.41174 * 18 17 15 28 28 C 1.53006 * 117.40259 * 135.77273 * 13 12 10 29 29 H 1.09000 * 119.54442 * 355.89368 * 28 13 12 30 30 H 1.08991 * 109.47154 * 300.00117 * 1 2 3 31 31 H 1.08997 * 109.46745 * 60.00488 * 1 2 3 32 32 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47193 * 239.99555 * 2 1 3 34 34 H 1.08991 * 109.47199 * 59.99911 * 3 2 1 35 35 H 1.08999 * 109.46729 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46875 * 299.99937 * 3 2 1 37 37 H 1.09000 * 109.47543 * 54.99761 * 4 2 1 38 38 H 1.09004 * 109.46757 * 294.99943 * 4 2 1 39 39 H 1.08994 * 109.47356 * 59.99824 * 5 4 2 40 40 H 1.09004 * 109.47072 * 299.99530 * 5 4 2 41 41 H 0.96996 * 119.99980 * 359.97438 * 8 6 5 42 42 H 1.08994 * 109.47151 * 59.99630 * 9 8 6 43 43 H 1.09004 * 109.46850 * 299.99597 * 9 8 6 44 44 H 0.96998 * 120.00306 * 359.97438 * 12 10 9 45 45 H 1.09008 * 110.40239 * 205.97954 * 17 15 13 46 46 H 1.08997 * 110.40686 * 328.40666 * 17 15 13 47 47 H 0.97001 * 119.99692 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.40795 * 280.80296 * 27 18 17 49 49 H 1.09001 * 110.40913 * 158.36901 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0672 -1.5409 2.4188 7 8 3.2829 -1.9211 3.2621 8 7 5.3882 -1.7523 2.5828 9 6 5.8766 -2.4419 3.7795 10 6 7.3785 -2.5501 3.7192 11 8 7.9815 -2.0963 2.7697 12 7 8.0515 -3.1521 4.7197 13 6 9.5115 -3.2577 4.6607 14 1 9.9647 -2.9756 3.7104 15 6 10.1683 -4.3955 5.4449 16 1 9.5426 -5.1395 5.9381 17 6 11.6047 -4.8102 5.0598 18 7 12.4779 -3.9136 5.8524 19 6 13.6513 -4.2274 6.4849 20 1 14.0588 -3.5596 7.2294 21 6 14.3168 -5.4039 6.1691 22 7 13.9227 -6.1280 5.1430 23 14 15.7718 -5.9596 7.2004 24 1 16.0115 -4.9775 8.2881 25 1 15.4802 -7.2905 7.7913 26 1 16.9800 -6.0531 6.3421 27 6 11.7935 -2.6005 5.8061 28 6 10.2927 -2.9386 5.9369 29 1 9.7598 -2.5822 6.8184 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6054 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.9994 0.1675 1.1421 40 1 3.8532 -1.3940 0.3002 41 1 6.0154 -1.4478 1.9085 42 1 5.4423 -3.4405 3.8261 43 1 5.5879 -1.8784 4.6668 44 1 7.5692 -3.5153 5.4789 45 1 11.7847 -5.8512 5.3286 46 1 11.7713 -4.6579 3.9935 47 1 14.3876 -6.9503 4.9226 48 1 11.9896 -2.1030 4.8562 49 1 12.1160 -1.9742 6.6379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114982846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:25 Heat of formation + Delta-G solvation = -56.715764 kcal Electronic energy + Delta-G solvation = -26218.537836 eV Core-core repulsion = 22373.683957 eV Total energy + Delta-G solvation = -3844.853879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44309 -40.67657 -39.75974 -37.47318 -36.18071 -35.47171 -34.41076 -32.35026 -31.95081 -29.13252 -28.91211 -27.96591 -27.44893 -25.15040 -23.56892 -21.98686 -21.67779 -21.46979 -20.90491 -20.73967 -18.92362 -18.71563 -17.92697 -17.23305 -17.10700 -16.92076 -16.60792 -16.36693 -15.64322 -15.55468 -15.30131 -15.00336 -14.65565 -14.61242 -14.46580 -14.20991 -13.81662 -13.74044 -13.41370 -13.35487 -13.17900 -13.03269 -12.89948 -12.75601 -12.60915 -12.19785 -12.12610 -12.01653 -11.89285 -11.68587 -11.66975 -11.48709 -11.41530 -11.20531 -10.97586 -10.85602 -10.70100 -10.24019 -9.76757 -8.93279 -7.93059 -5.29748 1.35750 1.46943 1.47479 1.58772 1.61949 1.62930 2.35762 2.48311 2.82175 3.27017 3.45060 3.62329 3.76915 3.80706 3.90955 3.91201 4.01574 4.13130 4.21145 4.29590 4.35549 4.37694 4.41747 4.51202 4.58384 4.70809 4.77478 4.84143 4.88223 4.89011 4.98662 4.98899 5.09473 5.17717 5.20633 5.26303 5.26963 5.37063 5.38785 5.43755 5.51270 5.52116 5.57116 5.63906 6.15880 6.38074 6.46550 6.99594 7.05280 7.17811 7.66343 8.44271 9.21040 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.048919 B = 0.001594 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.241908 B =17559.305114 C =17619.262178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.095 4.095 5 C -0.137 4.137 6 C 0.514 3.486 7 O -0.580 6.580 8 N -0.719 5.719 9 C 0.107 3.893 10 C 0.515 3.485 11 O -0.572 6.572 12 N -0.677 5.677 13 C 0.119 3.881 14 H 0.109 0.891 15 C -0.179 4.179 16 H 0.128 0.872 17 C 0.188 3.812 18 N -0.618 5.618 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.290 1.290 26 H -0.293 1.293 27 C 0.148 3.852 28 C -0.165 4.165 29 H 0.137 0.863 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.416 0.584 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.421 0.579 45 H 0.058 0.942 46 H -0.004 1.004 47 H 0.250 0.750 48 H 0.020 0.980 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.716 11.913 -7.246 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.209 4.209 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.302 3.698 7 O -0.460 6.460 8 N -0.374 5.374 9 C -0.020 4.020 10 C 0.303 3.697 11 O -0.451 6.451 12 N -0.328 5.328 13 C 0.011 3.989 14 H 0.127 0.873 15 C -0.200 4.200 16 H 0.146 0.854 17 C 0.062 3.938 18 N -0.342 5.342 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.809 3.191 24 H -0.188 1.188 25 H -0.217 1.217 26 H -0.220 1.220 27 C 0.022 3.978 28 C -0.186 4.186 29 H 0.154 0.846 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.259 0.741 45 H 0.077 0.923 46 H 0.014 0.986 47 H 0.059 0.941 48 H 0.038 0.962 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.636 11.816 -7.282 29.152 hybrid contribution 1.251 -0.746 0.457 1.527 sum -24.385 11.069 -6.825 27.636 Atomic orbital electron populations 1.21841 0.95108 1.01761 1.01921 1.21131 0.95948 0.96614 0.97664 1.21930 1.01564 0.95530 1.01885 1.21358 0.92961 1.00786 0.98245 1.21803 0.97825 1.02689 0.95279 1.21317 0.81060 0.78585 0.88804 1.90696 1.56118 1.53048 1.46132 1.45843 1.08251 1.59717 1.23589 1.21062 0.88603 1.01226 0.91151 1.20876 0.90367 0.76717 0.81761 1.90707 1.70714 1.49180 1.34491 1.45056 1.05357 1.58397 1.23940 1.21392 0.79921 1.01368 0.96183 0.87328 1.24343 0.98303 0.92361 1.05014 0.85395 1.20803 0.85312 0.95717 0.91988 1.45493 1.23078 1.05437 1.60165 1.19438 0.97616 1.05235 1.14644 0.89926 1.25750 1.01726 0.99253 0.98822 1.70103 1.43919 1.16542 1.29026 0.84984 0.78284 0.77879 0.77989 1.18772 1.21668 1.21997 1.21263 0.89698 0.88194 0.98630 1.24285 0.96305 0.99061 0.98955 0.84572 0.93047 0.91974 0.92857 0.90314 0.93069 0.91793 0.92213 0.92480 0.92546 0.86752 0.86795 0.74544 0.86967 0.86729 0.74094 0.92315 0.98571 0.94086 0.96243 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 71.98 0.66 -0.79 16 2 C -0.10 -0.91 2.92 -10.79 -0.03 -0.94 16 3 C -0.15 -1.28 8.95 71.98 0.64 -0.64 16 4 C -0.10 -1.23 3.97 30.59 0.12 -1.11 16 5 C -0.14 -1.54 5.46 29.85 0.16 -1.37 16 6 C 0.51 9.23 7.83 87.66 0.69 9.92 16 7 O -0.58 -14.59 15.98 -3.03 -0.05 -14.64 16 8 N -0.72 -12.12 5.53 -466.77 -2.58 -14.70 16 9 C 0.11 1.74 6.15 85.63 0.53 2.27 16 10 C 0.52 11.40 7.90 87.66 0.69 12.10 16 11 O -0.57 -17.10 15.23 -3.05 -0.05 -17.15 16 12 N -0.68 -14.37 5.56 -442.52 -2.46 -16.83 16 13 C 0.12 3.57 5.98 44.99 0.27 3.84 16 14 H 0.11 3.92 7.40 -2.39 -0.02 3.90 16 15 C -0.18 -6.26 7.06 -9.89 -0.07 -6.33 16 16 H 0.13 3.88 8.14 -2.38 -0.02 3.86 16 17 C 0.19 9.10 5.70 86.54 0.49 9.59 16 18 N -0.62 -31.59 3.38 -688.14 -2.33 -33.91 16 19 C -0.24 -13.37 10.35 84.03 0.87 -12.50 16 20 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 21 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 22 N -0.95 -56.71 10.87 21.65 0.24 -56.47 16 23 Si 0.98 45.02 29.56 68.60 2.03 47.05 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 C 0.15 6.02 7.04 86.53 0.61 6.63 16 28 C -0.17 -5.27 7.06 -9.88 -0.07 -5.34 16 29 H 0.14 3.54 8.14 -2.39 -0.02 3.53 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 0.46 6.57 -2.39 -0.02 0.44 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 39 H 0.11 0.92 6.57 -2.39 -0.02 0.90 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.42 6.73 7.44 -92.71 -0.69 6.04 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.42 6.05 8.83 -92.71 -0.82 5.23 16 45 H 0.06 3.21 6.51 -2.38 -0.02 3.20 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -73.63 398.03 0.27 -73.36 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.56 Total: 20.99 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.02 Total: 12.30 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -7.13 Total: -121.92 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.09 Total: -31.78 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.63 0.27 -73.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114982846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.648 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds