Wall clock time and date at job start Tue Mar 31 2020 13:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.46883 * 2 1 4 4 C 1.32998 * 119.99677 * 122.32980 * 3 2 1 5 5 C 1.50689 * 119.99842 * 185.69837 * 4 3 2 6 6 C 1.47098 * 119.99593 * 5.70104 * 4 3 2 7 7 O 1.21613 * 120.00159 * 259.48183 * 6 4 3 8 8 N 1.34775 * 120.00482 * 79.49342 * 6 4 3 9 9 C 1.47487 * 127.02901 * 5.02960 * 8 6 4 10 10 C 1.54007 * 107.08538 * 154.52155 * 9 8 6 11 11 H 1.08997 * 110.32722 * 120.19446 * 10 9 8 12 12 C 1.53004 * 110.32971 * 242.31385 * 10 9 8 13 13 C 1.54620 * 105.04091 * 1.30628 * 10 9 8 14 14 H 1.09001 * 110.74021 * 263.51131 * 13 10 9 15 15 N 1.46898 * 110.73970 * 140.37154 * 13 10 9 16 16 C 1.46899 * 111.00265 * 155.00155 * 15 13 10 17 17 C 1.50703 * 109.47284 * 179.97438 * 16 15 13 18 18 O 1.21293 * 119.99790 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99850 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99966 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99946 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99905 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99885 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47337 * 90.00020 * 24 22 20 26 26 H 1.48496 * 109.46905 * 209.99978 * 24 22 20 27 27 H 1.48502 * 109.47207 * 329.99841 * 24 22 20 28 28 C 1.48113 * 127.03992 * 184.72223 * 8 6 4 29 29 H 1.09001 * 109.47179 * 60.00200 * 1 2 3 30 30 H 1.08995 * 109.47513 * 299.99774 * 1 2 3 31 31 H 1.09002 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47295 * 120.00312 * 2 1 3 33 33 H 1.09004 * 109.47110 * 240.00628 * 2 1 3 34 34 H 1.07996 * 120.00338 * 302.33249 * 3 2 1 35 35 H 1.09001 * 109.47210 * 84.94925 * 5 4 3 36 36 H 1.08999 * 109.47491 * 204.95227 * 5 4 3 37 37 H 1.09004 * 109.47444 * 324.94839 * 5 4 3 38 38 H 1.08997 * 109.91347 * 273.87790 * 9 8 6 39 39 H 1.09005 * 109.91451 * 34.97109 * 9 8 6 40 40 H 1.09000 * 109.46734 * 58.54225 * 12 10 9 41 41 H 1.08994 * 109.46895 * 178.54583 * 12 10 9 42 42 H 1.08997 * 109.46495 * 298.54491 * 12 10 9 43 43 H 1.00905 * 111.00085 * 278.95361 * 15 13 10 44 44 H 1.09004 * 109.46818 * 299.99177 * 16 15 13 45 45 H 1.08995 * 109.47164 * 59.99552 * 16 15 13 46 46 H 0.96996 * 120.00354 * 0.02562 * 19 17 16 47 47 H 0.97000 * 120.00155 * 179.97438 * 23 22 20 48 48 H 1.09005 * 110.65943 * 337.75865 * 28 8 6 49 49 H 1.08987 * 110.66635 * 100.87993 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8347 1.8425 0.9733 5 6 3.2334 3.2939 1.0453 6 6 3.3328 0.8919 1.9793 7 8 2.8104 0.8381 3.0762 8 7 4.3682 0.0808 1.6856 9 6 5.1782 0.0852 0.4530 10 6 6.5546 -0.5040 0.8139 11 1 6.7523 -1.3960 0.2195 12 6 7.6535 0.5369 0.5905 13 6 6.4542 -0.8689 2.3131 14 1 6.8688 -0.0736 2.9326 15 7 7.1317 -2.1437 2.5846 16 6 7.5656 -2.2213 3.9859 17 6 8.2543 -3.5401 4.2263 18 8 8.3716 -4.3371 3.3196 19 7 8.7397 -3.8338 5.4488 20 6 9.3657 -5.0337 5.6676 21 1 9.4702 -5.7434 4.8602 22 6 9.8658 -5.3368 6.9281 23 7 9.7391 -4.4731 7.9103 24 14 10.7194 -6.9715 7.2260 25 1 12.1727 -6.8273 6.9570 26 1 10.5160 -7.3861 8.6373 27 1 10.1480 -8.0005 6.3205 28 6 4.9296 -0.9933 2.5370 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.7407 2.0968 -0.7902 35 1 2.4652 3.8559 1.5764 36 1 4.1816 3.3843 1.5754 37 1 3.3421 3.6914 0.0362 38 1 4.6990 -0.5303 -0.3083 39 1 5.2924 1.1058 0.0874 40 1 7.4492 1.4174 1.1997 41 1 8.6173 0.1143 0.8743 42 1 7.6767 0.8204 -0.4617 43 1 6.5405 -2.9256 2.3454 44 1 8.2574 -1.4060 4.1977 45 1 6.6975 -2.1406 4.6401 46 1 8.6456 -3.1966 6.1740 47 1 10.0879 -4.6848 8.7903 48 1 4.6805 -0.8234 3.5846 49 1 4.5733 -1.9697 2.2094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214261234.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:31 Heat of formation + Delta-G solvation = -62.581288 kcal Electronic energy + Delta-G solvation = -27502.556612 eV Core-core repulsion = 23657.448385 eV Total energy + Delta-G solvation = -3845.108227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54024 -38.65606 -37.89217 -36.04157 -34.69108 -33.78127 -32.62436 -32.46118 -31.22397 -29.10095 -27.38373 -26.61857 -26.28897 -24.37089 -23.27096 -22.48635 -21.47356 -20.46439 -19.24512 -18.54954 -17.88679 -16.87384 -16.39640 -16.07757 -15.86762 -15.32793 -15.24769 -14.51969 -14.36963 -14.18150 -13.91186 -13.79877 -13.59367 -13.56965 -13.38210 -13.31729 -13.09078 -12.98916 -12.59920 -12.39466 -12.33331 -12.15288 -12.08431 -11.66162 -11.52948 -11.43010 -11.33523 -11.17806 -11.09933 -11.01405 -10.81707 -10.39569 -10.22119 -10.07205 -9.51422 -9.27283 -8.96680 -8.47446 -8.09605 -7.96645 -6.41872 -3.82835 1.40755 2.40196 2.79182 3.17915 3.26653 3.32356 3.89597 4.00391 4.16244 4.27285 4.38205 4.46818 4.62771 4.72365 4.76664 4.95582 5.01758 5.04256 5.08361 5.09274 5.16333 5.25213 5.26349 5.31235 5.33168 5.40722 5.47637 5.59420 5.59930 5.62131 5.70012 5.72562 5.73206 5.80617 5.84424 5.92088 5.97264 6.05159 6.10114 6.18794 6.23983 6.29382 7.14752 7.31030 7.54975 7.56191 7.92827 8.05588 8.60415 9.17337 9.53688 10.04689 10.75797 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.002251 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.782335 B =12435.102320 C =12737.139704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.112 4.112 4 C -0.161 4.161 5 C -0.103 4.103 6 C 0.577 3.423 7 O -0.539 6.539 8 N -0.613 5.613 9 C 0.106 3.894 10 C -0.096 4.096 11 H 0.096 0.904 12 C -0.139 4.139 13 C 0.081 3.919 14 H 0.091 0.909 15 N -0.651 5.651 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.072 3.928 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.352 0.648 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.085 0.915 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 15.620 -16.709 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.131 4.131 4 C -0.164 4.164 5 C -0.160 4.160 6 C 0.366 3.634 7 O -0.416 6.416 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.115 4.115 11 H 0.115 0.885 12 C -0.196 4.196 13 C -0.031 4.031 14 H 0.109 0.891 15 N -0.283 5.283 16 C -0.084 4.084 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.052 4.052 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.051 15.291 -16.714 26.144 hybrid contribution -0.446 -0.517 1.165 1.351 sum -13.497 14.774 -15.549 25.341 Atomic orbital electron populations 1.21666 0.94359 1.02084 1.02093 1.20754 0.96806 0.93891 1.02797 1.23341 0.95873 0.97616 0.96297 1.21463 1.02019 0.96435 0.96468 1.20659 1.02086 0.90574 1.02712 1.18104 0.78544 0.79605 0.87178 1.90837 1.57828 1.69552 1.23345 1.48684 1.31583 1.34496 1.19916 1.22279 0.90931 1.01704 0.86799 1.22093 0.93158 0.99690 0.96597 0.88533 1.21784 0.98862 0.97824 1.01127 1.22736 0.90257 0.93813 0.96324 0.89105 1.60181 1.44276 1.02792 1.21035 1.21753 0.99260 0.98575 0.88855 1.19763 0.85133 0.88580 0.83918 1.90523 1.62326 1.50800 1.43181 1.41864 1.50614 1.18115 1.09335 1.19699 1.32227 0.94451 0.96534 0.87902 1.25274 0.98027 0.99480 0.95190 1.69611 1.46543 1.35754 1.02321 0.85852 0.79408 0.81511 0.77483 1.20379 1.20939 1.19418 1.23317 0.94637 0.90495 0.96782 0.92449 0.92418 0.92238 0.91485 0.90526 0.85658 0.90663 0.91714 0.90926 0.91483 0.90559 0.92973 0.91383 0.92632 0.82764 0.89453 0.93642 0.77433 0.91844 0.89684 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.11 -0.86 6.20 -27.88 -0.17 -1.03 16 3 C -0.11 -0.86 9.22 -36.12 -0.33 -1.20 16 4 C -0.16 -1.51 4.80 -102.85 -0.49 -2.01 16 5 C -0.10 -0.75 10.02 36.00 0.36 -0.39 16 6 C 0.58 7.34 5.28 -12.67 -0.07 7.27 16 7 O -0.54 -9.15 17.30 5.27 0.09 -9.06 16 8 N -0.61 -6.83 3.29 -171.37 -0.56 -7.39 16 9 C 0.11 0.91 6.37 -2.98 -0.02 0.89 16 10 C -0.10 -0.92 3.33 -89.24 -0.30 -1.22 16 11 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 12 C -0.14 -1.22 8.90 37.16 0.33 -0.89 16 13 C 0.08 0.96 2.92 -66.02 -0.19 0.76 16 14 H 0.09 1.11 7.55 -51.93 -0.39 0.71 16 15 N -0.65 -9.84 5.95 -106.21 -0.63 -10.47 16 16 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 17 C 0.44 10.26 7.82 -10.98 -0.09 10.18 16 18 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.07 0.87 6.68 -2.32 -0.02 0.85 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.71 6.32 -51.93 -0.33 0.39 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.56 7.34 -51.93 -0.38 0.18 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.35 5.48 7.92 -39.29 -0.31 5.17 16 44 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.08 1.16 7.82 -51.93 -0.41 0.76 16 49 H 0.08 0.88 7.78 -51.94 -0.40 0.47 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -33.17 404.04 -8.56 -41.73 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.38 Total: 11.41 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.89 Total: 5.34 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.53 Total: -56.06 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.18 Total: -24.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.17 -8.56 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214261234.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.852 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds