Wall clock time and date at job start Tue Mar 31 2020 14:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47002 * 2 1 4 4 C 1.50702 * 109.47394 * 119.99791 * 2 1 3 5 5 O 1.21281 * 120.00200 * 252.26424 * 4 2 1 6 6 N 1.34776 * 119.99708 * 72.26458 * 4 2 1 7 7 C 1.44315 * 116.32540 * 5.23690 * 6 4 2 8 8 C 1.51618 * 113.16339 * 173.31825 * 7 6 4 9 9 C 1.53082 * 111.46121 * 38.71351 * 8 7 6 10 10 H 1.09004 * 113.26367 * 64.99626 * 9 8 7 11 11 C 1.55589 * 106.64712 * 189.65189 * 9 8 7 12 12 C 1.54331 * 104.73348 * 89.04408 * 11 9 8 13 13 N 1.48409 * 106.87186 * 0.51635 * 12 11 9 14 14 C 1.46896 * 111.00382 * 145.68946 * 13 12 11 15 15 C 1.50704 * 109.47444 * 66.15302 * 14 13 12 16 16 O 1.21297 * 119.99575 * 7.33671 * 15 14 13 17 17 N 1.34774 * 120.00139 * 187.34201 * 15 14 13 18 18 C 1.37098 * 119.99908 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99984 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00125 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99983 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00157 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47155 * 89.99678 * 22 20 18 24 24 H 1.48507 * 109.47050 * 209.99727 * 22 20 18 25 25 H 1.48498 * 109.47138 * 329.99784 * 22 20 18 26 26 C 1.47867 * 104.68311 * 25.85352 * 13 12 11 27 27 H 1.09009 * 109.01313 * 72.55264 * 26 13 12 28 28 C 1.44009 * 116.32091 * 185.26203 * 6 4 2 29 29 H 1.08999 * 109.47426 * 69.39656 * 1 2 3 30 30 H 1.09002 * 109.47108 * 189.39513 * 1 2 3 31 31 H 1.08998 * 109.47279 * 309.39485 * 1 2 3 32 32 H 1.09002 * 109.47222 * 240.00515 * 2 1 3 33 33 H 1.08998 * 109.46895 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46865 * 299.99875 * 3 2 1 35 35 H 1.08999 * 109.46732 * 59.99429 * 3 2 1 36 36 H 1.09000 * 108.74349 * 294.26989 * 7 6 4 37 37 H 1.09002 * 108.74022 * 52.48351 * 7 6 4 38 38 H 1.09003 * 109.08352 * 159.11424 * 8 7 6 39 39 H 1.09005 * 109.08038 * 278.15985 * 8 7 6 40 40 H 1.09004 * 110.40047 * 330.20226 * 11 9 8 41 41 H 1.08993 * 110.40834 * 207.89342 * 11 9 8 42 42 H 1.09003 * 109.97866 * 119.86675 * 12 11 9 43 43 H 1.09000 * 109.98045 * 241.15562 * 12 11 9 44 44 H 1.09003 * 109.47180 * 186.15498 * 14 13 12 45 45 H 1.09004 * 109.46748 * 306.15312 * 14 13 12 46 46 H 0.96995 * 119.99823 * 359.97438 * 17 15 14 47 47 H 0.96994 * 119.99825 * 179.97438 * 21 20 18 48 48 H 1.09000 * 108.18885 * 55.94668 * 28 6 4 49 49 H 1.08998 * 108.18468 * 299.31646 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5362 -0.0765 2.1334 6 7 1.9218 -2.0501 1.3275 7 6 1.4184 -2.7367 0.1622 8 6 1.4740 -4.2465 0.2893 9 6 1.1158 -4.7030 1.7059 10 1 0.0852 -4.4803 1.9823 11 6 1.4454 -6.2217 1.7815 12 6 2.9206 -6.2813 2.2311 13 7 3.3745 -4.8792 2.4061 14 6 4.3359 -4.7711 3.5115 15 6 5.5984 -5.5122 3.1535 16 8 5.7419 -5.9610 2.0358 17 7 6.5679 -5.6763 4.0753 18 6 7.7166 -6.3500 3.7494 19 1 7.8444 -6.7495 2.7542 20 6 8.7163 -6.5187 4.6995 21 7 8.5610 -6.0321 5.9103 22 14 10.2812 -7.4372 4.2557 23 1 11.2860 -6.4782 3.7305 24 1 10.8217 -8.1076 5.4656 25 1 9.9798 -8.4561 3.2183 26 6 2.1405 -4.1198 2.7009 27 1 1.8086 -4.3596 3.7112 28 6 2.3187 -2.6344 2.5824 29 1 -0.3634 0.3616 -0.9619 30 1 -0.3633 -1.0139 0.1678 31 1 -0.3634 0.6522 0.7941 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 0.3833 -2.4368 -0.0012 37 1 2.0098 -2.4376 -0.7032 38 1 0.7698 -4.6896 -0.4149 39 1 2.4809 -4.5876 0.0482 40 1 1.3276 -6.6853 0.8021 41 1 0.8049 -6.7136 2.5135 42 1 3.0006 -6.8193 3.1757 43 1 3.5227 -6.7753 1.4685 44 1 4.5688 -3.7212 3.6892 45 1 3.9032 -5.2049 4.4131 46 1 6.4532 -5.3171 4.9689 47 1 9.2587 -6.1502 6.5736 48 1 1.7435 -2.1583 3.3765 49 1 3.3712 -2.4038 2.7472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222271990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:55 Heat of formation + Delta-G solvation = -61.220082 kcal Electronic energy + Delta-G solvation = -28758.910484 eV Core-core repulsion = 24913.861283 eV Total energy + Delta-G solvation = -3845.049201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03409 -39.44941 -37.87060 -35.88286 -34.74745 -33.93313 -33.16319 -31.21351 -30.59804 -29.94136 -27.40419 -26.63553 -25.22544 -24.30770 -23.16868 -22.82703 -20.96018 -19.62621 -19.12690 -18.32908 -17.79580 -17.45660 -16.34307 -16.16789 -15.82020 -15.55488 -15.06751 -14.72532 -14.61387 -14.30971 -13.92517 -13.81659 -13.67968 -13.61959 -13.16715 -12.83140 -12.65545 -12.52684 -12.41536 -12.23219 -12.13154 -11.88617 -11.71787 -11.57068 -11.42421 -11.26226 -11.17530 -11.11270 -10.85485 -10.70850 -10.53130 -10.45145 -10.38353 -10.20118 -9.68656 -9.47442 -8.59718 -8.43314 -8.01227 -7.92597 -6.39671 -3.80491 2.58405 2.97260 3.19014 3.27351 3.32855 3.92800 3.94686 4.21039 4.27971 4.43772 4.51217 4.61845 4.67487 4.79017 4.89880 4.98563 5.08157 5.14254 5.22912 5.25351 5.29494 5.30896 5.35641 5.43432 5.45178 5.56712 5.60452 5.65039 5.70421 5.72880 5.77816 5.84698 5.86540 5.92413 5.94422 6.04786 6.07513 6.12086 6.30721 6.33723 6.45870 6.68414 7.12310 7.21693 7.28946 7.56829 8.07992 8.16068 8.63886 9.20080 9.56643 10.08488 10.78214 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.003009 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.666174 B = 9302.251456 C =10283.799898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.505 3.495 5 O -0.538 6.538 6 N -0.589 5.589 7 C 0.113 3.887 8 C -0.119 4.119 9 C -0.082 4.082 10 H 0.088 0.912 11 C -0.129 4.129 12 C 0.042 3.958 13 N -0.479 5.479 14 C 0.033 3.967 15 C 0.446 3.554 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.057 3.943 27 H 0.056 0.944 28 C 0.138 3.862 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.064 0.936 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.357 7.648 -9.580 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.191 4.191 4 C 0.293 3.707 5 O -0.415 6.415 6 N -0.322 5.322 7 C -0.009 4.009 8 C -0.157 4.157 9 C -0.101 4.101 10 H 0.106 0.894 11 C -0.167 4.167 12 C -0.085 4.085 13 N -0.204 5.204 14 C -0.098 4.098 15 C 0.231 3.769 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.052 4.052 27 H 0.074 0.926 28 C 0.015 3.985 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.560 7.780 -10.134 23.362 hybrid contribution 0.522 -0.650 1.291 1.537 sum -19.038 7.130 -8.842 22.169 Atomic orbital electron populations 1.21870 0.92908 1.02781 1.02813 1.21340 0.97597 0.97992 0.96757 1.21627 1.01710 0.93675 1.02059 1.20797 0.78814 0.82079 0.89049 1.90692 1.43539 1.65994 1.41284 1.46554 1.64720 1.06765 1.14117 1.20946 0.98614 0.94064 0.87321 1.21506 1.04272 0.93529 0.96403 1.22026 0.97696 0.95253 0.95151 0.89372 1.22814 0.96489 0.95454 1.01916 1.22971 0.94151 0.89915 1.01496 1.64644 1.08286 1.08137 1.39293 1.22135 0.93857 1.01667 0.92172 1.19648 0.85280 0.85642 0.86341 1.90508 1.80552 1.53574 1.21459 1.41865 1.15728 1.49868 1.12749 1.19680 0.93105 1.30706 0.99240 0.87968 1.25257 0.99680 0.98061 0.94980 1.69615 1.35210 1.45976 1.03550 0.85866 0.81170 0.79445 0.77848 1.20397 1.20950 1.19455 1.22038 0.91584 0.93088 0.98458 0.92648 1.19960 1.01613 0.92294 0.84626 0.91438 0.91611 0.92030 0.88702 0.92132 0.92157 0.91758 0.91832 0.91516 0.90803 0.89243 0.90770 0.91760 0.93967 0.88836 0.89196 0.93348 0.77524 0.91891 0.91812 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.02 37.15 0.34 -0.67 16 2 C -0.12 -1.05 2.49 -91.77 -0.23 -1.28 16 3 C -0.13 -1.23 8.55 37.16 0.32 -0.91 16 4 C 0.50 6.59 6.76 -10.98 -0.07 6.52 16 5 O -0.54 -9.15 15.64 5.56 0.09 -9.06 16 6 N -0.59 -7.15 3.20 -179.95 -0.58 -7.73 16 7 C 0.11 1.04 5.09 -5.91 -0.03 1.01 16 8 C -0.12 -1.16 4.85 -27.39 -0.13 -1.30 16 9 C -0.08 -0.84 3.66 -88.53 -0.32 -1.16 16 10 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.13 -1.40 6.32 -24.66 -0.16 -1.56 16 12 C 0.04 0.65 5.48 -2.29 -0.01 0.64 16 13 N -0.48 -7.81 4.18 -226.08 -0.95 -8.76 16 14 C 0.03 0.61 5.10 -4.98 -0.03 0.59 16 15 C 0.45 10.66 7.45 -10.98 -0.08 10.57 16 16 O -0.58 -15.61 14.72 5.54 0.08 -15.53 16 17 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 18 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 22 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.06 0.74 2.09 -67.97 -0.14 0.59 16 27 H 0.06 0.68 8.03 -51.92 -0.42 0.26 16 28 C 0.14 1.88 5.16 -6.82 -0.04 1.84 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 5.42 -51.93 -0.28 0.14 16 31 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.09 0.73 6.72 -51.93 -0.35 0.38 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.66 7.97 -51.93 -0.41 0.24 16 36 H 0.06 0.44 5.38 -51.93 -0.28 0.16 16 37 H 0.07 0.58 6.90 -51.93 -0.36 0.22 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.14 7.37 -51.93 -0.38 0.76 16 40 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 43 H 0.09 1.68 7.40 -51.93 -0.38 1.30 16 44 H 0.09 1.59 6.90 -51.93 -0.36 1.23 16 45 H 0.05 0.81 7.93 -51.93 -0.41 0.40 16 46 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 49 H 0.07 1.19 6.61 -51.93 -0.34 0.85 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -33.31 374.62 -8.88 -42.19 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.99 Total: 8.96 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.83 Total: 6.82 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.85 Total: -55.34 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.17 Total: -24.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.31 -8.88 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222271990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.028 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds