Wall clock time and date at job start Tue Mar 31 2020 14:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 C 1.53002 * 109.47322 * 185.01895 * 3 2 1 5 5 H 1.09001 * 109.46907 * 55.26145 * 4 3 2 6 6 C 1.52998 * 109.47269 * 175.26434 * 4 3 2 7 7 C 1.52993 * 109.46978 * 185.00252 * 6 4 3 8 8 C 1.50708 * 109.46921 * 179.97438 * 7 6 4 9 9 C 1.38232 * 119.99603 * 269.72330 * 8 7 6 10 10 C 1.38243 * 119.99597 * 179.76696 * 9 8 7 11 11 C 1.38234 * 119.99820 * 0.50695 * 10 9 8 12 12 C 1.38238 * 120.00106 * 359.75182 * 11 10 9 13 13 C 1.38229 * 119.99935 * 359.97438 * 12 11 10 14 14 N 1.46503 * 109.46874 * 295.26555 * 4 3 2 15 15 C 1.39689 * 119.99909 * 131.13880 * 14 4 3 16 16 C 1.39336 * 119.94959 * 16.15166 * 15 14 4 17 17 C 1.38482 * 120.42170 * 180.02562 * 16 15 14 18 18 C 1.37691 * 120.32371 * 359.97438 * 17 16 15 19 19 C 1.40744 * 119.89275 * 359.97438 * 18 17 16 20 20 C 1.41406 * 120.20243 * 179.72391 * 19 18 17 21 21 H 1.08001 * 120.00376 * 333.81029 * 20 19 18 22 22 C 1.39935 * 119.99803 * 153.81237 * 20 19 18 23 23 N 1.30829 * 120.00147 * 348.04751 * 22 20 19 24 24 Si 1.86799 * 120.00142 * 168.04553 * 22 20 19 25 25 H 1.48496 * 109.47142 * 59.99803 * 24 22 20 26 26 H 1.48501 * 109.47180 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46941 * 300.00208 * 24 22 20 28 28 C 1.38274 * 119.95157 * 196.13870 * 15 14 4 29 29 H 1.09004 * 109.46669 * 299.99423 * 1 2 3 30 30 H 1.08997 * 109.47606 * 59.99366 * 1 2 3 31 31 H 1.08999 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46669 * 240.00577 * 2 1 3 33 33 H 1.08995 * 109.47087 * 120.00581 * 2 1 3 34 34 H 1.09004 * 109.46819 * 65.01927 * 3 2 1 35 35 H 1.09002 * 109.47560 * 305.02462 * 3 2 1 36 36 H 1.09003 * 109.47123 * 304.99930 * 6 4 3 37 37 H 1.09002 * 109.47300 * 64.99902 * 6 4 3 38 38 H 1.08998 * 109.47553 * 299.99474 * 7 6 4 39 39 H 1.09001 * 109.47383 * 60.00259 * 7 6 4 40 40 H 1.07996 * 120.00748 * 0.02562 * 9 8 7 41 41 H 1.07997 * 120.00143 * 180.23575 * 10 9 8 42 42 H 1.08003 * 119.99859 * 179.72265 * 11 10 9 43 43 H 1.07999 * 119.99883 * 179.97438 * 12 11 10 44 44 H 1.08006 * 120.00018 * 179.97438 * 13 12 11 45 45 H 0.96998 * 120.00216 * 311.13328 * 14 4 3 46 46 H 1.07998 * 119.79015 * 0.02562 * 16 15 14 47 47 H 1.07997 * 119.83569 * 179.97438 * 17 16 15 48 48 H 1.08002 * 120.05023 * 180.02562 * 18 17 16 49 49 H 0.96997 * 120.00268 * 180.02562 * 23 22 20 50 50 H 1.08003 * 120.16180 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 -0.1262 5 1 3.8565 0.8840 -1.0145 6 6 4.0650 2.8853 -0.2450 7 6 5.5742 2.8822 -0.4960 8 6 6.0668 4.3017 -0.6136 9 6 6.1016 4.9210 -1.8490 10 6 6.5489 6.2246 -1.9562 11 6 6.9712 6.9053 -0.8296 12 6 6.9414 6.2841 0.4050 13 6 6.4888 4.9825 0.5130 14 7 4.1538 0.8192 1.0607 15 6 5.1297 -0.1700 0.9175 16 6 5.7845 -0.3298 -0.3019 17 6 6.7531 -1.3076 -0.4548 18 6 7.0802 -2.1328 0.5978 19 6 6.4279 -1.9824 1.8359 20 6 6.7545 -2.8301 2.9196 21 1 7.1512 -3.8171 2.7327 22 6 6.5638 -2.3900 4.2342 23 7 6.3097 -1.1288 4.4715 24 14 6.6720 -3.6035 5.6503 25 1 8.0223 -4.2209 5.6710 26 1 6.4328 -2.8916 6.9314 27 1 5.6461 -4.6626 5.4740 28 6 5.4446 -0.9889 1.9863 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.7519 1.9297 0.9316 35 1 1.6051 1.9817 -0.8415 36 1 3.5596 3.3781 -1.0756 37 1 3.8516 3.4215 0.6798 38 1 6.0797 2.3896 0.3345 39 1 5.7877 2.3462 -1.4208 40 1 5.7755 4.3879 -2.7298 41 1 6.5726 6.7098 -2.9207 42 1 7.3249 7.9223 -0.9140 43 1 7.2717 6.8158 1.2851 44 1 6.4659 4.4970 1.4775 45 1 3.8662 1.0922 1.9459 46 1 5.5350 0.3129 -1.1332 47 1 7.2544 -1.4235 -1.4044 48 1 7.8366 -2.8937 0.4738 49 1 6.1778 -0.8237 5.3827 50 1 4.9375 -0.8660 2.9319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659809360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:08 Heat of formation + Delta-G solvation = 15.039206 kcal Electronic energy + Delta-G solvation = -26771.626250 eV Core-core repulsion = 23340.733163 eV Total energy + Delta-G solvation = -3430.893087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.33698 -38.27834 -36.52971 -33.98537 -33.61386 -32.65238 -30.83654 -30.45196 -29.38451 -27.97882 -26.62806 -25.17266 -24.19703 -22.50937 -21.62849 -21.40476 -20.47901 -20.36790 -19.48643 -17.27560 -16.70744 -15.86424 -15.48291 -15.19377 -15.02699 -14.76931 -14.57129 -14.14504 -13.91496 -13.72743 -13.37902 -13.06692 -12.93926 -12.74512 -12.65041 -12.55096 -12.21106 -11.94438 -11.73871 -11.56692 -11.41925 -11.13920 -11.11062 -11.01220 -10.97879 -10.71716 -10.62670 -10.56674 -10.42634 -10.32184 -10.13815 -9.56187 -9.40853 -9.16796 -8.88150 -8.74470 -8.50793 -7.22914 -6.65635 -6.10493 -4.28833 1.42220 1.44217 2.91569 3.10796 3.14464 3.26890 3.36456 3.83729 4.00974 4.38441 4.75164 4.78170 4.91411 4.98156 5.08349 5.17676 5.23051 5.24721 5.36915 5.52538 5.55454 5.59717 5.66453 5.71084 5.85285 5.88138 5.93965 5.95942 6.01183 6.08545 6.13610 6.16053 6.28215 6.30793 6.36149 6.46394 6.51237 6.53759 6.56090 6.59444 6.68372 6.82487 6.93801 7.07808 7.17273 7.19978 7.46351 7.50990 7.88250 8.00516 8.16505 8.23931 8.55121 8.78573 8.90712 9.06293 9.17261 10.32330 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.003536 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.840052 B = 7916.441383 C = 9419.001386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.157 3.843 5 H 0.084 0.916 6 C -0.122 4.122 7 C -0.079 4.079 8 C -0.069 4.069 9 C -0.122 4.122 10 C -0.122 4.122 11 C -0.134 4.134 12 C -0.120 4.120 13 C -0.116 4.116 14 N -0.752 5.752 15 C 0.216 3.784 16 C -0.293 4.293 17 C -0.071 4.071 18 C -0.255 4.255 19 C 0.136 3.864 20 C -0.464 4.464 21 H 0.073 0.927 22 C 0.076 3.924 23 N -0.800 5.800 24 Si 0.906 3.094 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.266 1.266 28 C -0.223 4.223 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.388 0.612 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.276 0.724 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 11.902 -7.747 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.165 4.165 4 C 0.049 3.951 5 H 0.102 0.898 6 C -0.161 4.161 7 C -0.117 4.117 8 C -0.069 4.069 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.152 4.152 12 C -0.138 4.138 13 C -0.134 4.134 14 N -0.385 5.385 15 C 0.117 3.883 16 C -0.315 4.315 17 C -0.090 4.090 18 C -0.276 4.276 19 C 0.133 3.867 20 C -0.495 4.495 21 H 0.091 0.909 22 C -0.140 4.140 23 N -0.426 5.426 24 Si 0.731 3.269 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.191 1.191 28 C -0.247 4.247 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.221 0.779 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.087 0.913 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.066 12.086 -7.734 15.579 hybrid contribution 0.097 -0.262 1.048 1.085 sum -5.968 11.824 -6.686 14.837 Atomic orbital electron populations 1.21781 0.96660 1.01224 1.01094 1.21446 0.94637 0.96779 1.02935 1.21958 0.95856 0.97108 1.01550 1.20800 0.91124 0.92258 0.90868 0.89800 1.22029 0.94952 0.97778 1.01330 1.20676 0.96014 0.91292 1.03676 1.20136 0.97099 0.96676 0.92979 1.21075 1.00621 0.95039 0.97256 1.21098 0.99647 0.94934 0.98323 1.21072 1.01344 0.99804 0.92987 1.21143 0.99891 0.95246 0.97498 1.21160 0.98967 0.94611 0.98676 1.44412 1.44891 1.43273 1.05929 1.17615 0.88170 0.88200 0.94269 1.20011 1.07391 1.07247 0.96863 1.20291 0.96575 0.95586 0.96521 1.20878 1.05903 1.05224 0.95565 1.17332 0.87800 0.90440 0.91133 1.19524 1.38269 1.01500 0.90177 0.90877 1.25836 0.92686 0.95224 1.00276 1.69821 1.36022 1.14683 1.22093 0.86418 0.79730 0.81155 0.79621 1.19178 1.20514 1.19052 1.20902 1.04170 1.01470 0.98169 0.93142 0.93293 0.93063 0.92259 0.91159 0.92259 0.91945 0.92213 0.92163 0.89452 0.91226 0.86316 0.86495 0.86579 0.86378 0.85975 0.77878 0.89410 0.89890 0.89620 0.91327 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.60 5.76 -26.73 -0.15 -1.75 16 3 C -0.13 -1.55 4.89 -26.73 -0.13 -1.68 16 4 C 0.16 2.22 2.08 -67.93 -0.14 2.08 16 5 H 0.08 1.30 5.98 -51.93 -0.31 0.98 16 6 C -0.12 -1.58 4.87 -26.74 -0.13 -1.71 16 7 C -0.08 -1.14 4.20 -27.88 -0.12 -1.26 16 8 C -0.07 -0.94 5.13 -104.62 -0.54 -1.47 16 9 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 10 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 12 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 13 C -0.12 -1.56 9.70 -39.59 -0.38 -1.95 16 14 N -0.75 -13.08 4.10 -52.21 -0.21 -13.29 16 15 C 0.22 4.69 6.18 -83.86 -0.52 4.17 16 16 C -0.29 -6.25 8.31 -39.08 -0.32 -6.58 16 17 C -0.07 -1.60 10.02 -39.69 -0.40 -2.00 16 18 C -0.26 -6.38 9.79 -38.84 -0.38 -6.76 16 19 C 0.14 3.64 5.57 -106.86 -0.60 3.05 16 20 C -0.46 -12.50 9.07 -37.74 -0.34 -12.85 16 21 H 0.07 1.91 7.87 -52.49 -0.41 1.49 16 22 C 0.08 1.93 5.25 -17.34 -0.09 1.84 16 23 N -0.80 -20.69 10.75 55.55 0.60 -20.09 16 24 Si 0.91 19.04 29.58 -169.99 -5.03 14.01 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 C -0.22 -5.65 8.54 -38.68 -0.33 -5.98 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.52 7.06 -51.93 -0.37 1.15 16 39 H 0.07 1.01 7.11 -51.93 -0.37 0.64 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.39 6.70 8.87 -40.82 -0.36 6.34 16 46 H 0.09 1.68 4.81 -52.49 -0.25 1.43 16 47 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 48 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 49 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 50 H 0.12 3.18 6.07 -52.48 -0.32 2.86 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -27.19 400.35 -12.67 -39.87 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -8.28 Total: 14.92 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: -5.78 Total: -41.45 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.38 Total: -33.38 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -27.19 -12.67 -39.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659809360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.905 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds